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The map label for this gene is 110678199

Identifier: 110678199

GI number: 110678199

Start: 826145

End: 826726

Strand: Direct

Name: 110678199

Synonym: RD1_0847

Alternate gene names: NA

Gene position: 826145-826726 (Clockwise)

Preceding gene: 110678198

Following gene: 110678200

Centisome position: 19.99

GC content: 55.84

Gene sequence:

>582_bases
ATGTCCCTCGTGACACGATACCTTCGGGTTCAAGATGGCCTGTCCGAGTTTGTCGGGCAGGTCATCTGCTGGCTCACCCT
GGTGATGATCGGGGTGCTGATGTTCGAAATCGTGGCACGTTACTTTTTGAATGCGCCCACGCTCTGGGCGCATGAATCCA
GCACCATGCTTTATGGTGCGTTTTGCATGCTGGCCGGTGCCTACACTTTAAAGCATCGCGGTCACGTCCGCAGCGAGGTG
ATCTGGGGTGCTTTGCCCAAGCGAGGTCAGGCCTTTTGTGATGTGCTGATTTTTGGCGCCGGAGCCGTGGTTCTGGTCAT
CTTTCTGAAACTGGCGATTGATTTTGCGACGGCCAGTTGGGCCGTGCTGGAATACTCCAACAAAAGCATGTGGCAACCAC
CGCTTTATCCGATCAAGACGGTGATCCCCGTGGCGGTGGCGCTGATCCTGCTGCAGAACATGGCCGAACTGCTGCGCGCG
CTCCTGACCTTGTTCAACGTCGATTTTGAGGATCCCCGCGGCGAAGAAGTCGATACCAGTATCGCGCAAGAGCTACTTGG
GGCTGACAGCAATAAATCCTAG

Upstream 100 bases:

>100_bases
CCGCACAGCAGGTCTGGCAGGAAGAGGCCGCGCGCTCCGAGCGTAACGCAAAGCTGATCGAACTTCTGATCGAGAATGCC
AAGGCCCAAGGGCGTCTCTG

Downstream 100 bases:

>100_bases
GCGCGGCAGGCGCTGATCCAGCATTTTTCAAGCGCCACGTCCTTTCAAGGAACACCACTATGGAAAACCTAGACCCGCTT
GCGATTACCGGCATCATGTT

Product: TRAP dicarboxylate transporter, DctQ subunit, putative

Products: NA

Alternate protein names: TRAP Transporter DctQ-Like Membrane Protein; Mannitol Transporter; TRAP Dicarboxylate Transporter Subunit DctQ; TRAP Transporter Small Transmembrane Protein; Transporter DctQ Related Transmembrane Protein; Small Integral Membrane Tranport Protein; Trap Transporter Dctq Family; TRAP-Type Transporter Small Permease Component; Trap-T Family Transporter Dctq Subunit; Trap-Type Transport System Small Permease Component; Tripartite Transporter Small Subunit; Transporter DctQ-Related Transmembrane Protein; TRAP Transporter DctQ-Like Membrane Protein Family; TRAP Dicarboxylate Transporter DctM Subunit; TRAP Dicarboxylate Transporter DctQ Subunit; Tripartite ATP-Independent Periplasmic; TRAP-Type Mannitol/Chloroaromatic Compound Transport System; C4-Dicarboxylate Transporter Small Subunit

Number of amino acids: Translated: 193; Mature: 192

Protein sequence:

>193_residues
MSLVTRYLRVQDGLSEFVGQVICWLTLVMIGVLMFEIVARYFLNAPTLWAHESSTMLYGAFCMLAGAYTLKHRGHVRSEV
IWGALPKRGQAFCDVLIFGAGAVVLVIFLKLAIDFATASWAVLEYSNKSMWQPPLYPIKTVIPVAVALILLQNMAELLRA
LLTLFNVDFEDPRGEEVDTSIAQELLGADSNKS

Sequences:

>Translated_193_residues
MSLVTRYLRVQDGLSEFVGQVICWLTLVMIGVLMFEIVARYFLNAPTLWAHESSTMLYGAFCMLAGAYTLKHRGHVRSEV
IWGALPKRGQAFCDVLIFGAGAVVLVIFLKLAIDFATASWAVLEYSNKSMWQPPLYPIKTVIPVAVALILLQNMAELLRA
LLTLFNVDFEDPRGEEVDTSIAQELLGADSNKS
>Mature_192_residues
SLVTRYLRVQDGLSEFVGQVICWLTLVMIGVLMFEIVARYFLNAPTLWAHESSTMLYGAFCMLAGAYTLKHRGHVRSEVI
WGALPKRGQAFCDVLIFGAGAVVLVIFLKLAIDFATASWAVLEYSNKSMWQPPLYPIKTVIPVAVALILLQNMAELLRAL
LTLFNVDFEDPRGEEVDTSIAQELLGADSNKS

Specific function: Unknown

COG id: COG4665

COG function: function code Q; TRAP-type mannitol/chloroaromatic compound transport system, small permease component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21445; Mature: 21313

Theoretical pI: Translated: 5.67; Mature: 5.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLVTRYLRVQDGLSEFVGQVICWLTLVMIGVLMFEIVARYFLNAPTLWAHESSTMLYGA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHH
FCMLAGAYTLKHRGHVRSEVIWGALPKRGQAFCDVLIFGAGAVVLVIFLKLAIDFATASW
HHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVLEYSNKSMWQPPLYPIKTVIPVAVALILLQNMAELLRALLTLFNVDFEDPRGEEVDTS
HHEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
IAQELLGADSNKS
HHHHHHCCCCCCC
>Mature Secondary Structure 
SLVTRYLRVQDGLSEFVGQVICWLTLVMIGVLMFEIVARYFLNAPTLWAHESSTMLYGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHH
FCMLAGAYTLKHRGHVRSEVIWGALPKRGQAFCDVLIFGAGAVVLVIFLKLAIDFATASW
HHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVLEYSNKSMWQPPLYPIKTVIPVAVALILLQNMAELLRALLTLFNVDFEDPRGEEVDTS
HHEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
IAQELLGADSNKS
HHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA