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The map label for this gene is qseD [H]

Identifier: 110678176

GI number: 110678176

Start: 802412

End: 803389

Strand: Direct

Name: qseD [H]

Synonym: RD1_0820

Alternate gene names: 110678176

Gene position: 802412-803389 (Clockwise)

Preceding gene: 110678172

Following gene: 110678187

Centisome position: 19.41

GC content: 59.41

Gene sequence:

>978_bases
ATGCGTCTGGAATGGATCGACGACATCCTCGCGGTGCTTGACACCGGGTCGTTGGCGCGCGCGGCTCAAAAGCGACTGGT
CACGCAATCCGCTTTCACAAGGCGTGTGCGATTGATTGAGGAGAGCATCGGCGCGGAATTGTTTGACCGGCGGCGCAGGC
CCGTCATGCTTTTGGCCGGTGTTGAAGCGCTTGCACCGGAACTGCGCGACCTGAGCACGCGGCTGCGTCAGGTCAGGCAG
AAACTTCATGCTGCAAACAGCCAGACGGGCAGCGCGCTGAGCTTTGCGTGTCAGCATGCGATCACAACGACCGTGTCGCC
CTACATCGTGCGCGCCCTTACCGCACGAGGCGATGCGCCGGTCAGAGTGCGGTCGTGCAATCAGGAAGAGTGCCTTGTCC
TTCTGCTTTCTGGTGAGGTTGATTTTGTTCTGACATATACGGTGCCTGAGACGCCAACCCCATTCTTGGAAGGTGCGTTT
GAATCGCTGAAACTCGGAGACGATGTTCTTATTCCTGTATGCGCCCCCGGGCTGCGTGACGATATCTCCTCAGACCGGCT
GCCGGTCATAAGCTATCCGTCGGATGTGTTTCTGGGGCAGGTTTTTGACCGACATATCGTGCCGCGTCTGGACAATGAGG
TACAAGTCGTAACCAAGACCGAAACAGCACTTACGCTTGCGGCCTATGAATTCGCCGTCGGCGGCATCGGCGTGGCGTGG
TTGCCGCAGTCAATGGTTGTTACGGCTCTGGCACAGGGATCGTTGATCTCGCTGGATCGGGACCTGCCGGTGCAACCGCT
CCATATCAAGGCGTTTCGACTGTGCGATGACGGTGGGTTGCAATCAGACTCGGCATGGCGGAACACCCTGTCCCAGATTG
CCTTGCCCGACCATCTGCAGTCGCACGCCCCGCGGGGCGCGGACGGATACCCGTTCGCCGGGGGCTCTTATCCGTCTTGT
CCTTCCGCTCAATCCTGA

Upstream 100 bases:

>100_bases
TTTGCTTTTTCCGAGGTTTATACTTTGATTGGCGGAATTGATAATGCAAATTACCCCCTGTAACTTGCGAAATTCGCAAG
TTTGGGGCGGGAGGCAGAAG

Downstream 100 bases:

>100_bases
GGCTTTCTGACTGAAGCGTCATGCGAAAAACCTGCATCACGTCGCGCTGCCTGAAATCAAGGGTTTCAATGCGTTACGTG
ATACTTGGTGTTTCAGGTGT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Quorum-sensing regulator protein D [H]

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MRLEWIDDILAVLDTGSLARAAQKRLVTQSAFTRRVRLIEESIGAELFDRRRRPVMLLAGVEALAPELRDLSTRLRQVRQ
KLHAANSQTGSALSFACQHAITTTVSPYIVRALTARGDAPVRVRSCNQEECLVLLLSGEVDFVLTYTVPETPTPFLEGAF
ESLKLGDDVLIPVCAPGLRDDISSDRLPVISYPSDVFLGQVFDRHIVPRLDNEVQVVTKTETALTLAAYEFAVGGIGVAW
LPQSMVVTALAQGSLISLDRDLPVQPLHIKAFRLCDDGGLQSDSAWRNTLSQIALPDHLQSHAPRGADGYPFAGGSYPSC
PSAQS

Sequences:

>Translated_325_residues
MRLEWIDDILAVLDTGSLARAAQKRLVTQSAFTRRVRLIEESIGAELFDRRRRPVMLLAGVEALAPELRDLSTRLRQVRQ
KLHAANSQTGSALSFACQHAITTTVSPYIVRALTARGDAPVRVRSCNQEECLVLLLSGEVDFVLTYTVPETPTPFLEGAF
ESLKLGDDVLIPVCAPGLRDDISSDRLPVISYPSDVFLGQVFDRHIVPRLDNEVQVVTKTETALTLAAYEFAVGGIGVAW
LPQSMVVTALAQGSLISLDRDLPVQPLHIKAFRLCDDGGLQSDSAWRNTLSQIALPDHLQSHAPRGADGYPFAGGSYPSC
PSAQS
>Mature_325_residues
MRLEWIDDILAVLDTGSLARAAQKRLVTQSAFTRRVRLIEESIGAELFDRRRRPVMLLAGVEALAPELRDLSTRLRQVRQ
KLHAANSQTGSALSFACQHAITTTVSPYIVRALTARGDAPVRVRSCNQEECLVLLLSGEVDFVLTYTVPETPTPFLEGAF
ESLKLGDDVLIPVCAPGLRDDISSDRLPVISYPSDVFLGQVFDRHIVPRLDNEVQVVTKTETALTLAAYEFAVGGIGVAW
LPQSMVVTALAQGSLISLDRDLPVQPLHIKAFRLCDDGGLQSDSAWRNTLSQIALPDHLQSHAPRGADGYPFAGGSYPSC
PSAQS

Specific function: Down-regulates expression of the flagellar regulon, decreasing motility [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790783, Length=288, Percent_Identity=23.2638888888889, Blast_Score=104, Evalue=9e-24,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35414; Mature: 35414

Theoretical pI: Translated: 5.67; Mature: 5.67

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLEWIDDILAVLDTGSLARAAQKRLVTQSAFTRRVRLIEESIGAELFDRRRRPVMLLAG
CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCEEEEEC
VEALAPELRDLSTRLRQVRQKLHAANSQTGSALSFACQHAITTTVSPYIVRALTARGDAP
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCC
VRVRSCNQEECLVLLLSGEVDFVLTYTVPETPTPFLEGAFESLKLGDDVLIPVCAPGLRD
EEEECCCCCCEEEEEEECCEEEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHH
DISSDRLPVISYPSDVFLGQVFDRHIVPRLDNEVQVVTKTETALTLAAYEFAVGGIGVAW
CCCCCCCEEEECCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCHHH
LPQSMVVTALAQGSLISLDRDLPVQPLHIKAFRLCDDGGLQSDSAWRNTLSQIALPDHLQ
CCHHHHHHHHHCCCEEEECCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHCCCHHHH
SHAPRGADGYPFAGGSYPSCPSAQS
HCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRLEWIDDILAVLDTGSLARAAQKRLVTQSAFTRRVRLIEESIGAELFDRRRRPVMLLAG
CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCEEEEEC
VEALAPELRDLSTRLRQVRQKLHAANSQTGSALSFACQHAITTTVSPYIVRALTARGDAP
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCC
VRVRSCNQEECLVLLLSGEVDFVLTYTVPETPTPFLEGAFESLKLGDDVLIPVCAPGLRD
EEEECCCCCCEEEEEEECCEEEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEECCCCCHH
DISSDRLPVISYPSDVFLGQVFDRHIVPRLDNEVQVVTKTETALTLAAYEFAVGGIGVAW
CCCCCCCEEEECCCHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCHHH
LPQSMVVTALAQGSLISLDRDLPVQPLHIKAFRLCDDGGLQSDSAWRNTLSQIALPDHLQ
CCHHHHHHHHHCCCEEEECCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHCCCHHHH
SHAPRGADGYPFAGGSYPSCPSAQS
HCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 7876157 [H]