| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is crp [C]
Identifier: 110678172
GI number: 110678172
Start: 798543
End: 799160
Strand: Direct
Name: crp [C]
Synonym: RD1_0816
Alternate gene names: 110678172
Gene position: 798543-799160 (Clockwise)
Preceding gene: 110678171
Following gene: 110678176
Centisome position: 19.32
GC content: 57.28
Gene sequence:
>618_bases TTGCCGAAAACCGGATTTTTGGCCCATGCCTCGCAGAAACTGTCTGATCTGTTGAATTCCGTTTCGACTGAAGTCGACCT GAGCGAAGGTGAAGTGCTGTTCGAGCAGGGCGACACCGGTGACGCGCTTTACGCCATTGTGTCGGGAAGTCTGGAATTCA GCATAATATCACGGGAAGGGCGCAAGCTGTCCTTGGATGTGATGCGCCCCGGGGCGCTGTTTGGTGAGATTGCGCTGTTT GACCCCGGTACGCGTACAGCTACGGTCACCGCGCTTGAGCACAGCCGCGTGCGGGGAGTGAAAAACGCGGATGTTCTGGC TGCCATTCGCAAGTCGCCAGAGTTGGGGATAGATCTTATTCAACTGGCTGGGGTGCGGCTGCGTTGGATGAGCAGCCAGT TGAACGAGCAGGTATTCCTGCCCATGCCCGCCCGGCTCGCGCGTAAAATTCTCTACCTTACGATAGATGGATCAGATGAC CTTGGCCTTTTGAACCTGTCTCAGGCTGAACTGGCAGAATTCGTCGGCGCGACGCGGGAGGCGGTATCCAAAACACTGTC CCTTTGGAAACGTGCCGGTGTCATTGACGCGTCGCGGGGGGGGGCTGCGGGTTATTGA
Upstream 100 bases:
>100_bases GGTTTCATACGTTAAACAGGACGCCTGATCACACAGGTAAAAGATACGTCTATGTAAAGACGCAGCAATCAAGGATTGGA GTACGATGGACAGCCCGGAG
Downstream 100 bases:
>100_bases CCGCAATGCCCTGCAGGTCATGGCGGATCTGCATCATATTTGATGTGCCCATGTGATGAGGGTCACAGACGAACCGTTAC ATTTACGCAATATTGAACTG
Product: Crp/FNR family transcriptional regulator
Products: NA
Alternate protein names: Crp/FNR Family Transcriptional Regulator; Crp/Fnr Family Transcriptional Regulator; CRP/FNR Family Transcriptional Regulator; Transcriptional Regulator; Crp Family Transcriptional Regulator; CRP Family Transcriptional Regulator; CAMP-Dependent Transcriptional Regulator; Catabolite Gene Activator; Transcription Regulator; CRP Protein; Transcription Regulator Crp Family; Transcriptional Regulatory Protein; Regulatory Protein; Transcriptional Regulator Crp; Global Nitrogen Regulator NtcA; Anaerobic Regulatory Protein; Transcriptional Regulator Crp/Fnr Family Protein
Number of amino acids: Translated: 205; Mature: 204
Protein sequence:
>205_residues MPKTGFLAHASQKLSDLLNSVSTEVDLSEGEVLFEQGDTGDALYAIVSGSLEFSIISREGRKLSLDVMRPGALFGEIALF DPGTRTATVTALEHSRVRGVKNADVLAAIRKSPELGIDLIQLAGVRLRWMSSQLNEQVFLPMPARLARKILYLTIDGSDD LGLLNLSQAELAEFVGATREAVSKTLSLWKRAGVIDASRGGAAGY
Sequences:
>Translated_205_residues MPKTGFLAHASQKLSDLLNSVSTEVDLSEGEVLFEQGDTGDALYAIVSGSLEFSIISREGRKLSLDVMRPGALFGEIALF DPGTRTATVTALEHSRVRGVKNADVLAAIRKSPELGIDLIQLAGVRLRWMSSQLNEQVFLPMPARLARKILYLTIDGSDD LGLLNLSQAELAEFVGATREAVSKTLSLWKRAGVIDASRGGAAGY >Mature_204_residues PKTGFLAHASQKLSDLLNSVSTEVDLSEGEVLFEQGDTGDALYAIVSGSLEFSIISREGRKLSLDVMRPGALFGEIALFD PGTRTATVTALEHSRVRGVKNADVLAAIRKSPELGIDLIQLAGVRLRWMSSQLNEQVFLPMPARLARKILYLTIDGSDDL GLLNLSQAELAEFVGATREAVSKTLSLWKRAGVIDASRGGAAGY
Specific function: This Protein Complexes With Cyclic AMP And Binds To Specific DNA Sites Near The Promoter To Regulate The Transcription Of Several Catabolite-Sensitive Operons. The Protein Induces A Severe Bend In The DNA. Acts As A Negative Regulator Of Its Own Synthesi
COG id: COG0664
COG function: function code T; cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1789756, Length=170, Percent_Identity=27.0588235294118, Blast_Score=64, Evalue=8e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22017; Mature: 21885
Theoretical pI: Translated: 5.34; Mature: 5.34
Prosite motif: PS00889 CNMP_BINDING_2 ; PS50042 CNMP_BINDING_3 ; PS51063 HTH_CRP_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKTGFLAHASQKLSDLLNSVSTEVDLSEGEVLFEQGDTGDALYAIVSGSLEFSIISREG CCCCCCHHHHHHHHHHHHHHHCCCEECCCCEEEEECCCCCCEEEEEEECCEEEEEEECCC RKLSLDVMRPGALFGEIALFDPGTRTATVTALEHSRVRGVKNADVLAAIRKSPELGIDLI CEEEEEEECCCCCEEEEEEECCCCCEEEEEEEHHHHHCCCCCHHHHHHHHCCCCCCHHHH QLAGVRLRWMSSQLNEQVFLPMPARLARKILYLTIDGSDDLGLLNLSQAELAEFVGATRE HHCCHHHEEHHHHCCCEEECCCCHHHCCEEEEEEEECCCCCEEEECCHHHHHHHHHHHHH AVSKTLSLWKRAGVIDASRGGAAGY HHHHHHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure PKTGFLAHASQKLSDLLNSVSTEVDLSEGEVLFEQGDTGDALYAIVSGSLEFSIISREG CCCCCHHHHHHHHHHHHHHHCCCEECCCCEEEEECCCCCCEEEEEEECCEEEEEEECCC RKLSLDVMRPGALFGEIALFDPGTRTATVTALEHSRVRGVKNADVLAAIRKSPELGIDLI CEEEEEEECCCCCEEEEEEECCCCCEEEEEEEHHHHHCCCCCHHHHHHHHCCCCCCHHHH QLAGVRLRWMSSQLNEQVFLPMPARLARKILYLTIDGSDDLGLLNLSQAELAEFVGATRE HHCCHHHEEHHHHCCCEEECCCCHHHCCEEEEEEEECCCCCEEEECCHHHHHHHHHHHHH AVSKTLSLWKRAGVIDASRGGAAGY HHHHHHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA