Click here to switch to the map view.

The map label for this gene is 110678157

Identifier: 110678157

GI number: 110678157

Start: 777108

End: 779060

Strand: Direct

Name: 110678157

Synonym: RD1_0800

Alternate gene names: NA

Gene position: 777108-779060 (Clockwise)

Preceding gene: 110678156

Following gene: 110678158

Centisome position: 18.8

GC content: 55.3

Gene sequence:

>1953_bases
ATGATTTTACAGTCTCTTTGTCTCACTAATTTTGGTCTTTATGGCGGTGAACACCGCTTTGATCTTGCACCCGAGCCAGA
CGGGCAAAAACCTGTGGTTTTGGTTGTTGGCCATAATGGTGCCGGGAAGACAACGTTCCTGGAATCTGTACGTTTGGCGC
TCTACGGCAAACGCGCCCTCGGCGCGCGTGTTGGGCAGGCCGAGTATGAGCGGCATCTCCTTAAACGGATCAACAACTTC
GCCAAGGACCGCATCGCCTCTGTCGAACTGGCCTTCACGAGCCAACACCTTGGTAACGAGGACCTCTACACCGTGCGTCG
ATCTTGGGCGGCCCGCGGTGCCAGCGTCATTGAAAGCCTTGAGTTTGAACGCAATGGCGCTCCGGTGGAGGATATCCCAA
GCGAGGATTGGAACCACTATCTTGAAGACATCATTCCAGCTGGGGTGTCGCAGCTTTTCTTTTTCGATGGAGAGAAGATC
CAAGATATTGCTGACGATCAGGAAAGCACTGGGCTGACAGATGCAATCAAATCCTTGCTAGGAATCGATATTCTCGATCA
GCTTCGGGGCGATCTCGCCCTCTACAAATCACGCAGCATGGACCGGGATGGTGACACCGGCCTAGAAGGTCTCCGGCGCG
ACCTAGAGGTCGCAAAGTCTGATCTGGTCTTGGCTGAAGAGGAGATTGGATCGCTATCAGCAAAGCGCACCCAGCTTGCG
CGCCGAAGCGAGGTTTCACAAAAAGTCTTTGAACAAGAGGGGGGCAGCATCGCGCTCAGCCGTGACACCCTGTCAGAGGA
GCTAAAGCGGGTCGAAGCCGAACTGACCAAACAAACCAACGCGTTAAAGACGCGTGTAAACGGCGTCGCGCCATTTGCCC
TGGCTCCAAATCTTCTTGAACGATTTTCAGCAGACCTGGAGAAAGCGCGCGGACAGCAAAGCGCGACAGCAATCGAAGCC
TTTGTCTCGAGTTTTCAGGCGGCCGTAGGCAAAAGCGACGAGACCTGGACGAAGGCGCATTTTGCGCAGCTCAAAGACTT
CGCCCGGAACCGCCAAAGCACCGGGCCCAGAATGGCTCTGAGCACGGAACCAGACTGGGTTTTGGCGAAACTTTCTCAGA
TTGCGGACGAACGGGTAAAGGTCGCCACATTGGCTGCGCAACTGGCCGAGCTGCAAAAGCAACGTACGACCTTGAAGGAT
CAGTTGAAGAACTTCCGCCCCGGTGCTGCCTCCGGTGCATTTGAGGAGTTGAAGAAAGCAGAGTTCGAACTCGGCGCCAT
CGAAACTGAGCTTAATCGCAAGCAAGGTGAGGCGACACAGGCTCGTGCACTGATCGAACGCCTAGAGCGCGAGTTGCGCA
AGTCCCAGGACGCCGTCTTCGCGCTTGCAAAGGCCGAAGAGAAACGTGACCTGGCGACGCGAGCGCAGGCCGCGCTCAAT
GAGTATGAGGAGCGGATTGTTCAGCTGCGCCTCGCCTCGCTTTCCAAGCATTTCATTGAGGCTTTCAGCGGTCTCGTCAC
GCGGAAGTCGCTGGTGCATGACGTGATCGTCGACCCCAACAGTTTTCAGCTTAAACTTATGGGCAGAGATGGCAGAGAGA
TTACCCCATCCGAACTCTCCGCTGGCGAGCGGCAACTCTTTGCGATCTCAATGCTTTGGGCGCTCGGCCGAACAAGTGGG
CGCGAATTACCGATGATCATCGACACGCCGTTGTCGCGTTTGGACCGGAAACACCGGACAAACTTGATGGCAAATTACGT
ACCGCGCAGCTCGGCGCAGGTCGTCATGCTGTGCACCGATACCGAGTTGACCCCGGATTTGTCGAAAATCATCAAACCTT
ATGTGAGCCGACGTTTTGAGATTGGAACTGTGGGTGGTGGACAACGCACGAAGATCACGGTGTTGAGTACCGAAGCGGAA
GCACAGGTTCTGGAGACAACCGATGCACATTAA

Upstream 100 bases:

>100_bases
AGCAAGAGTGGCGAGACGAAGGAACAGTCCTGAACGAGCGCAAAGCGCGATTGAAAGAGCGCAAGGCATCTTCGTCTGAC
CCTCTGTTTGAGACTGAGTC

Downstream 100 bases:

>100_bases
TAAGTTTCGGATCTCATCGACGGCGACCGGCCAGGTGCGGATCATTTCACAAAGATCTGGGCTGACACCCAACCTCGTTT
GCCGCATGGCCATGTTGTCA

Product: hypothetical protein

Products: NA

Alternate protein names: SMC Domain-Containing Protein; ATPase Involved In DNA Repair; DNA Repair ATPase; SMC Protein-Like; SMC Protein-Like Protein; SMC Domain Protein; ATPase; Chromosome Segregation Protein; DNA Sulfur Protein Dndd; ATPase Involved In DNA Thiolation

Number of amino acids: Translated: 650; Mature: 650

Protein sequence:

>650_residues
MILQSLCLTNFGLYGGEHRFDLAPEPDGQKPVVLVVGHNGAGKTTFLESVRLALYGKRALGARVGQAEYERHLLKRINNF
AKDRIASVELAFTSQHLGNEDLYTVRRSWAARGASVIESLEFERNGAPVEDIPSEDWNHYLEDIIPAGVSQLFFFDGEKI
QDIADDQESTGLTDAIKSLLGIDILDQLRGDLALYKSRSMDRDGDTGLEGLRRDLEVAKSDLVLAEEEIGSLSAKRTQLA
RRSEVSQKVFEQEGGSIALSRDTLSEELKRVEAELTKQTNALKTRVNGVAPFALAPNLLERFSADLEKARGQQSATAIEA
FVSSFQAAVGKSDETWTKAHFAQLKDFARNRQSTGPRMALSTEPDWVLAKLSQIADERVKVATLAAQLAELQKQRTTLKD
QLKNFRPGAASGAFEELKKAEFELGAIETELNRKQGEATQARALIERLERELRKSQDAVFALAKAEEKRDLATRAQAALN
EYEERIVQLRLASLSKHFIEAFSGLVTRKSLVHDVIVDPNSFQLKLMGRDGREITPSELSAGERQLFAISMLWALGRTSG
RELPMIIDTPLSRLDRKHRTNLMANYVPRSSAQVVMLCTDTELTPDLSKIIKPYVSRRFEIGTVGGGQRTKITVLSTEAE
AQVLETTDAH

Sequences:

>Translated_650_residues
MILQSLCLTNFGLYGGEHRFDLAPEPDGQKPVVLVVGHNGAGKTTFLESVRLALYGKRALGARVGQAEYERHLLKRINNF
AKDRIASVELAFTSQHLGNEDLYTVRRSWAARGASVIESLEFERNGAPVEDIPSEDWNHYLEDIIPAGVSQLFFFDGEKI
QDIADDQESTGLTDAIKSLLGIDILDQLRGDLALYKSRSMDRDGDTGLEGLRRDLEVAKSDLVLAEEEIGSLSAKRTQLA
RRSEVSQKVFEQEGGSIALSRDTLSEELKRVEAELTKQTNALKTRVNGVAPFALAPNLLERFSADLEKARGQQSATAIEA
FVSSFQAAVGKSDETWTKAHFAQLKDFARNRQSTGPRMALSTEPDWVLAKLSQIADERVKVATLAAQLAELQKQRTTLKD
QLKNFRPGAASGAFEELKKAEFELGAIETELNRKQGEATQARALIERLERELRKSQDAVFALAKAEEKRDLATRAQAALN
EYEERIVQLRLASLSKHFIEAFSGLVTRKSLVHDVIVDPNSFQLKLMGRDGREITPSELSAGERQLFAISMLWALGRTSG
RELPMIIDTPLSRLDRKHRTNLMANYVPRSSAQVVMLCTDTELTPDLSKIIKPYVSRRFEIGTVGGGQRTKITVLSTEAE
AQVLETTDAH
>Mature_650_residues
MILQSLCLTNFGLYGGEHRFDLAPEPDGQKPVVLVVGHNGAGKTTFLESVRLALYGKRALGARVGQAEYERHLLKRINNF
AKDRIASVELAFTSQHLGNEDLYTVRRSWAARGASVIESLEFERNGAPVEDIPSEDWNHYLEDIIPAGVSQLFFFDGEKI
QDIADDQESTGLTDAIKSLLGIDILDQLRGDLALYKSRSMDRDGDTGLEGLRRDLEVAKSDLVLAEEEIGSLSAKRTQLA
RRSEVSQKVFEQEGGSIALSRDTLSEELKRVEAELTKQTNALKTRVNGVAPFALAPNLLERFSADLEKARGQQSATAIEA
FVSSFQAAVGKSDETWTKAHFAQLKDFARNRQSTGPRMALSTEPDWVLAKLSQIADERVKVATLAAQLAELQKQRTTLKD
QLKNFRPGAASGAFEELKKAEFELGAIETELNRKQGEATQARALIERLERELRKSQDAVFALAKAEEKRDLATRAQAALN
EYEERIVQLRLASLSKHFIEAFSGLVTRKSLVHDVIVDPNSFQLKLMGRDGREITPSELSAGERQLFAISMLWALGRTSG
RELPMIIDTPLSRLDRKHRTNLMANYVPRSSAQVVMLCTDTELTPDLSKIIKPYVSRRFEIGTVGGGQRTKITVLSTEAE
AQVLETTDAH

Specific function: Unknown

COG id: COG0419

COG function: function code L; ATPase involved in DNA repair

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 72135; Mature: 72135

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: PS00211 ABC_TRANSPORTER_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILQSLCLTNFGLYGGEHRFDLAPEPDGQKPVVLVVGHNGAGKTTFLESVRLALYGKRAL
CCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCHHH
GARVGQAEYERHLLKRINNFAKDRIASVELAFTSQHLGNEDLYTVRRSWAARGASVIESL
HHHCCHHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHH
EFERNGAPVEDIPSEDWNHYLEDIIPAGVSQLFFFDGEKIQDIADDQESTGLTDAIKSLL
HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHH
GIDILDQLRGDLALYKSRSMDRDGDTGLEGLRRDLEVAKSDLVLAEEEIGSLSAKRTQLA
HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHH
RRSEVSQKVFEQEGGSIALSRDTLSEELKRVEAELTKQTNALKTRVNGVAPFALAPNLLE
HHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
RFSADLEKARGQQSATAIEAFVSSFQAAVGKSDETWTKAHFAQLKDFARNRQSTGPRMAL
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEE
STEPDWVLAKLSQIADERVKVATLAAQLAELQKQRTTLKDQLKNFRPGAASGAFEELKKA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
EFELGAIETELNRKQGEATQARALIERLERELRKSQDAVFALAKAEEKRDLATRAQAALN
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EYEERIVQLRLASLSKHFIEAFSGLVTRKSLVHDVIVDPNSFQLKLMGRDGREITPSELS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEEECCCCCCCCHHHHC
AGERQLFAISMLWALGRTSGRELPMIIDTPLSRLDRKHRTNLMANYVPRSSAQVVMLCTD
CCHHHHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEC
TELTPDLSKIIKPYVSRRFEIGTVGGGQRTKITVLSTEAEAQVLETTDAH
CCCCHHHHHHHHHHHHCCEEEEECCCCCCEEEEEEECCHHHHHHHCCCCC
>Mature Secondary Structure
MILQSLCLTNFGLYGGEHRFDLAPEPDGQKPVVLVVGHNGAGKTTFLESVRLALYGKRAL
CCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCHHH
GARVGQAEYERHLLKRINNFAKDRIASVELAFTSQHLGNEDLYTVRRSWAARGASVIESL
HHHCCHHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHH
EFERNGAPVEDIPSEDWNHYLEDIIPAGVSQLFFFDGEKIQDIADDQESTGLTDAIKSLL
HHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHH
GIDILDQLRGDLALYKSRSMDRDGDTGLEGLRRDLEVAKSDLVLAEEEIGSLSAKRTQLA
HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHH
RRSEVSQKVFEQEGGSIALSRDTLSEELKRVEAELTKQTNALKTRVNGVAPFALAPNLLE
HHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
RFSADLEKARGQQSATAIEAFVSSFQAAVGKSDETWTKAHFAQLKDFARNRQSTGPRMAL
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEE
STEPDWVLAKLSQIADERVKVATLAAQLAELQKQRTTLKDQLKNFRPGAASGAFEELKKA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
EFELGAIETELNRKQGEATQARALIERLERELRKSQDAVFALAKAEEKRDLATRAQAALN
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EYEERIVQLRLASLSKHFIEAFSGLVTRKSLVHDVIVDPNSFQLKLMGRDGREITPSELS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEEECCCCCCCCHHHHC
AGERQLFAISMLWALGRTSGRELPMIIDTPLSRLDRKHRTNLMANYVPRSSAQVVMLCTD
CCHHHHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEC
TELTPDLSKIIKPYVSRRFEIGTVGGGQRTKITVLSTEAEAQVLETTDAH
CCCCHHHHHHHHHHHHCCEEEEECCCCCCEEEEEEECCHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA