| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is 110678156
Identifier: 110678156
GI number: 110678156
Start: 775648
End: 777111
Strand: Direct
Name: 110678156
Synonym: RD1_0799
Alternate gene names: NA
Gene position: 775648-777111 (Clockwise)
Preceding gene: 110678155
Following gene: 110678157
Centisome position: 18.77
GC content: 56.15
Gene sequence:
>1464_bases ATGACATCAAAGAATGAAACCGACCAAACAAAGCGGGCAGGGCTCGATCTTGTCGCTCTGCAGGAAAATATCCGCGCGGT TTACGCGGCAGACGACCGGCCATGGGTGATCGGGTATAGCGGCGGAAAGGATTCAACCTGTGCCTTGCAGCTAATCTGGA GTGCCATTCGTGCGCTTCCGGAAGACGCGAGACGCAAGCCAATCTTCGTCCTCAGTTCCGACACGCTTGTCGAAACGCCC GTGATCGTAAACTACATCGACGATACCTTGGCAGCCATCAACGCGGCAGCGGCAGACCAGAACATGCCCATCACCGCACA AAAGGTGGTTCCGGAGATTTCAGATAGCTTCTGGGTGAACCTGATTGGCCGCGGATATCCTGCACCGTCAAAGCGCTTTC GCTGGTGCACGGAGCGGCTGAAGATCGATCCGGCCAATGCCTTCATCAAGAACCGCGTTGCCGAATATGGCGAGGTGGTC ATGGTTCTGGGCGTACGGTCCTCGGAAAGCGCGACACGCGCGCAGGTGATGTCGCTGCACAAGATCGATGGTACGGCTTT GTCTCGCCATTCGACCTTACCCGGCGCTTTCGTCTTCACGCCGATCGAGACCTTCAGTGTGGATGATGTTTGGGCTTTCT TGCTGCAAAATCAGTCACCTTGGGGATCGGACAACCGCGATTTGCTTGCGATGTATCGAAACGCGCAAGCTGGCGAGTGC CCACTTGTAGTCGATAAGCAAACTGAAAGCTGCGGGAATTCCCGCTTTGGCTGCTGGGTGTGCACGGTTGTGACAAAGGA CAAGGCCATGGAAGCGCTTGTTGAGAATGGCGAGGAATGGCTTGAGCCTTTGCTTGATCTCCGTGACGAGCTGGCTGAAA CACAAAACCCCGAGCGGAAACGAGAGTTTCGAGATTTTCGCAGACGGGACGGCTCTGTGACCTTTGTGGGCGATGCAGAG ACATCCATTCCGGGGCCCTATCTTTTCGAATACCGCAAAGAGCTCTTGAGAAAACTTCTGGAGGCGCAAGAGCGGGTAAA TGCCAATGCGCCACCCGGCGAGAAGACCGACCTTATTCAGGTCGAAGAACTCCGGGAAATCCGTCGGATCTGGCGGAGCG AACAGGGTGACTGGGGCGACGCTGTTTCAGAGACCCTCAAAGCTGTGACGGGCAAGGAACTCCCAGCCGATGCGACCGAC GGATTTGAATTCCAAGCCGATGACGCCAAGGTCTTGGCGGATGTCTGCGCCGCGCATGACTTGCCGTCACGTCTCTTGGC CCAGCTCCTGGAAGCAGAGCGTTCTGTGCGGGGTCTGAAGCGGAGGACCCTTATTCACCGAAAGATCGCTTCGATCCTTG AGCAAGAGTGGCGAGACGAAGGAACAGTCCTGAACGAGCGCAAAGCGCGATTGAAAGAGCGCAAGGCATCTTCGTCTGAC CCTCTGTTTGAGACTGAGTCATGA
Upstream 100 bases:
>100_bases CCAACGTCCTAGTTGCGGCTGTAGGCTTGCCGCTCAATGAAAAAGAACAAGCGAATGAAGACGACTACCTGGCGTCATTG GCTGAGGAGAAAGTCGTCGC
Downstream 100 bases:
>100_bases TTTTACAGTCTCTTTGTCTCACTAATTTTGGTCTTTATGGCGGTGAACACCGCTTTGATCTTGCACCCGAGCCAGACGGG CAAAAACCTGTGGTTTTGGT
Product: hypothetical protein
Products: NA
Alternate protein names: Sulfurtransferase DndC; 3-Phosphoadenosine 5'-Phosphosulfate Sulfotransferase; Phosphoadenosine Phosphosulphate Reductase; Sulfurtransferase Dndc
Number of amino acids: Translated: 487; Mature: 486
Protein sequence:
>487_residues MTSKNETDQTKRAGLDLVALQENIRAVYAADDRPWVIGYSGGKDSTCALQLIWSAIRALPEDARRKPIFVLSSDTLVETP VIVNYIDDTLAAINAAAADQNMPITAQKVVPEISDSFWVNLIGRGYPAPSKRFRWCTERLKIDPANAFIKNRVAEYGEVV MVLGVRSSESATRAQVMSLHKIDGTALSRHSTLPGAFVFTPIETFSVDDVWAFLLQNQSPWGSDNRDLLAMYRNAQAGEC PLVVDKQTESCGNSRFGCWVCTVVTKDKAMEALVENGEEWLEPLLDLRDELAETQNPERKREFRDFRRRDGSVTFVGDAE TSIPGPYLFEYRKELLRKLLEAQERVNANAPPGEKTDLIQVEELREIRRIWRSEQGDWGDAVSETLKAVTGKELPADATD GFEFQADDAKVLADVCAAHDLPSRLLAQLLEAERSVRGLKRRTLIHRKIASILEQEWRDEGTVLNERKARLKERKASSSD PLFETES
Sequences:
>Translated_487_residues MTSKNETDQTKRAGLDLVALQENIRAVYAADDRPWVIGYSGGKDSTCALQLIWSAIRALPEDARRKPIFVLSSDTLVETP VIVNYIDDTLAAINAAAADQNMPITAQKVVPEISDSFWVNLIGRGYPAPSKRFRWCTERLKIDPANAFIKNRVAEYGEVV MVLGVRSSESATRAQVMSLHKIDGTALSRHSTLPGAFVFTPIETFSVDDVWAFLLQNQSPWGSDNRDLLAMYRNAQAGEC PLVVDKQTESCGNSRFGCWVCTVVTKDKAMEALVENGEEWLEPLLDLRDELAETQNPERKREFRDFRRRDGSVTFVGDAE TSIPGPYLFEYRKELLRKLLEAQERVNANAPPGEKTDLIQVEELREIRRIWRSEQGDWGDAVSETLKAVTGKELPADATD GFEFQADDAKVLADVCAAHDLPSRLLAQLLEAERSVRGLKRRTLIHRKIASILEQEWRDEGTVLNERKARLKERKASSSD PLFETES >Mature_486_residues TSKNETDQTKRAGLDLVALQENIRAVYAADDRPWVIGYSGGKDSTCALQLIWSAIRALPEDARRKPIFVLSSDTLVETPV IVNYIDDTLAAINAAAADQNMPITAQKVVPEISDSFWVNLIGRGYPAPSKRFRWCTERLKIDPANAFIKNRVAEYGEVVM VLGVRSSESATRAQVMSLHKIDGTALSRHSTLPGAFVFTPIETFSVDDVWAFLLQNQSPWGSDNRDLLAMYRNAQAGECP LVVDKQTESCGNSRFGCWVCTVVTKDKAMEALVENGEEWLEPLLDLRDELAETQNPERKREFRDFRRRDGSVTFVGDAET SIPGPYLFEYRKELLRKLLEAQERVNANAPPGEKTDLIQVEELREIRRIWRSEQGDWGDAVSETLKAVTGKELPADATDG FEFQADDAKVLADVCAAHDLPSRLLAQLLEAERSVRGLKRRTLIHRKIASILEQEWRDEGTVLNERKARLKERKASSSDP LFETES
Specific function: Unknown
COG id: COG0175
COG function: function code EH; 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54715; Mature: 54584
Theoretical pI: Translated: 4.90; Mature: 4.90
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSKNETDQTKRAGLDLVALQENIRAVYAADDRPWVIGYSGGKDSTCALQLIWSAIRALP CCCCCCCCHHHHHCCHHEEEHHCCEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHCC EDARRKPIFVLSSDTLVETPVIVNYIDDTLAAINAAAADQNMPITAQKVVPEISDSFWVN HHHCCCCEEEEECCCEECCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHH LIGRGYPAPSKRFRWCTERLKIDPANAFIKNRVAEYGEVVMVLGVRSSESATRAQVMSLH HHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHH KIDGTALSRHSTLPGAFVFTPIETFSVDDVWAFLLQNQSPWGSDNRDLLAMYRNAQAGEC HCCCCHHHCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCC PLVVDKQTESCGNSRFGCWVCTVVTKDKAMEALVENGEEWLEPLLDLRDELAETQNPERK CEEEECCHHHCCCCCCCEEEEEEECHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHH REFRDFRRRDGSVTFVGDAETSIPGPYLFEYRKELLRKLLEAQERVNANAPPGEKTDLIQ HHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEE VEELREIRRIWRSEQGDWGDAVSETLKAVTGKELPADATDGFEFQADDAKVLADVCAAHD HHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEECCCHHHHHHHHHHHCC LPSRLLAQLLEAERSVRGLKRRTLIHRKIASILEQEWRDEGTVLNERKARLKERKASSSD CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCC PLFETES CCCCCCC >Mature Secondary Structure TSKNETDQTKRAGLDLVALQENIRAVYAADDRPWVIGYSGGKDSTCALQLIWSAIRALP CCCCCCCHHHHHCCHHEEEHHCCEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHCC EDARRKPIFVLSSDTLVETPVIVNYIDDTLAAINAAAADQNMPITAQKVVPEISDSFWVN HHHCCCCEEEEECCCEECCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHH LIGRGYPAPSKRFRWCTERLKIDPANAFIKNRVAEYGEVVMVLGVRSSESATRAQVMSLH HHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHH KIDGTALSRHSTLPGAFVFTPIETFSVDDVWAFLLQNQSPWGSDNRDLLAMYRNAQAGEC HCCCCHHHCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCC PLVVDKQTESCGNSRFGCWVCTVVTKDKAMEALVENGEEWLEPLLDLRDELAETQNPERK CEEEECCHHHCCCCCCCEEEEEEECHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHH REFRDFRRRDGSVTFVGDAETSIPGPYLFEYRKELLRKLLEAQERVNANAPPGEKTDLIQ HHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEE VEELREIRRIWRSEQGDWGDAVSETLKAVTGKELPADATDGFEFQADDAKVLADVCAAHD HHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEECCCHHHHHHHHHHHCC LPSRLLAQLLEAERSVRGLKRRTLIHRKIASILEQEWRDEGTVLNERKARLKERKASSSD CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCC PLFETES CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA