| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is 110678155
Identifier: 110678155
GI number: 110678155
Start: 774545
End: 775651
Strand: Direct
Name: 110678155
Synonym: RD1_0798
Alternate gene names: NA
Gene position: 774545-775651 (Clockwise)
Preceding gene: 110678151
Following gene: 110678156
Centisome position: 18.74
GC content: 53.66
Gene sequence:
>1107_bases ATGAGCGGTAACTTCTATAATTTTGCAGCCATACGCGGCGTCCAGGCTGGAACCGAGTATTATGTGATCATGGTCCCTCT TAAGATGGTTCCAAAGATTTTCGAATTCGACAGTCAGGAATTGCCAGCAGACCTGCGCGCTCAACGCGTATTGTCAAATG TCCGCGTTCCGCAAATCGCATCCTACCTCTCGGAAAACTTCGAAGAATATACGCTCTCATCTCTCTGCGCATCTGTGGAT GGTGATCTTGAGTTTTCCCCAGCCAGCGACGGTCTTCAGTTCCGTAATGTAGGCGAGCTACGGCTTTCGATGACAGCCCG CATCATCCTAAACGACGGTCAGCATCGTCGCGCCGCAATCGAAGAAGCCCTCAAGACGCGACCCAAGCTCGAAAACGAAA CCATCTCGGTTGTGCTTTTCCTCGATGAGGGGCTGGAGCGCTGCCAGCAAATGTTCGCAGACCTCAACAAGAATGCCGTA CGCCCATCCGGGTCGTTGAACGTCCTCTATGACCGCAGAAATCCTTTGGCACGTCTGAGCACGCGCGTGTTAGAGGACAT TCCGTTTTTCCAAGAATTCACCGAGCTCGAAAAAACATCTCTTTCGAACCGGGCCAAAAACCTCTTTACCTTGTCCAGCC TGAATCAAGCCAACAAGTGGCTCGCTGGGCAAGATGCGGATCGGTTCGGTGAAAACACTGAAAGCACCGTGATCGCATAT TGGCGTCAGGTTTCTGAGGTCATCCCAGACTGGCAGAAACTGATGCGTGGCGCGACGACAGCAGGCGACCTGCGAAAAGA AACGGTTCATGCGCATGGCGTGATGCTGCAGGCTTTTGGAGTCTTAGGGGCAAGACTGATTACAGCAAAGCCGGATGGAT GGGCCGAAACCCTGGCTCCGCTCGCGGAGATCAATTGGAGCAAGCGCAATGCCCAGCTCTGGCGTCCTCGCGTCATGGGC GCGCGCGGAATGGATGGCAGTGTGAAATCTGTACATCTGGCGGCCAACGTCCTAGTTGCGGCTGTAGGCTTGCCGCTCAA TGAAAAAGAACAAGCGAATGAAGACGACTACCTGGCGTCATTGGCTGAGGAGAAAGTCGTCGCATGA
Upstream 100 bases:
>100_bases GTGGAGAGCAATTCGACAGTACAAAGCCGCTCAAATCGCGCCGCAGGCGTTGACTTCCATCTAGACTTCCATAGACTTCC CGCTCAATGGCAGGGGTTTT
Downstream 100 bases:
>100_bases CATCAAAGAATGAAACCGACCAAACAAAGCGGGCAGGGCTCGATCTTGTCGCTCTGCAGGAAAATATCCGCGCGGTTTAC GCGGCAGACGACCGGCCATG
Product: hypothetical protein
Products: NA
Alternate protein names: DGQHR Domain Protein; Bacteriophage Protein; Thiol Protease Domain-Containing Protein; DNA Thiolation Protein; DGQHR Domain-Containing Protein
Number of amino acids: Translated: 368; Mature: 367
Protein sequence:
>368_residues MSGNFYNFAAIRGVQAGTEYYVIMVPLKMVPKIFEFDSQELPADLRAQRVLSNVRVPQIASYLSENFEEYTLSSLCASVD GDLEFSPASDGLQFRNVGELRLSMTARIILNDGQHRRAAIEEALKTRPKLENETISVVLFLDEGLERCQQMFADLNKNAV RPSGSLNVLYDRRNPLARLSTRVLEDIPFFQEFTELEKTSLSNRAKNLFTLSSLNQANKWLAGQDADRFGENTESTVIAY WRQVSEVIPDWQKLMRGATTAGDLRKETVHAHGVMLQAFGVLGARLITAKPDGWAETLAPLAEINWSKRNAQLWRPRVMG ARGMDGSVKSVHLAANVLVAAVGLPLNEKEQANEDDYLASLAEEKVVA
Sequences:
>Translated_368_residues MSGNFYNFAAIRGVQAGTEYYVIMVPLKMVPKIFEFDSQELPADLRAQRVLSNVRVPQIASYLSENFEEYTLSSLCASVD GDLEFSPASDGLQFRNVGELRLSMTARIILNDGQHRRAAIEEALKTRPKLENETISVVLFLDEGLERCQQMFADLNKNAV RPSGSLNVLYDRRNPLARLSTRVLEDIPFFQEFTELEKTSLSNRAKNLFTLSSLNQANKWLAGQDADRFGENTESTVIAY WRQVSEVIPDWQKLMRGATTAGDLRKETVHAHGVMLQAFGVLGARLITAKPDGWAETLAPLAEINWSKRNAQLWRPRVMG ARGMDGSVKSVHLAANVLVAAVGLPLNEKEQANEDDYLASLAEEKVVA >Mature_367_residues SGNFYNFAAIRGVQAGTEYYVIMVPLKMVPKIFEFDSQELPADLRAQRVLSNVRVPQIASYLSENFEEYTLSSLCASVDG DLEFSPASDGLQFRNVGELRLSMTARIILNDGQHRRAAIEEALKTRPKLENETISVVLFLDEGLERCQQMFADLNKNAVR PSGSLNVLYDRRNPLARLSTRVLEDIPFFQEFTELEKTSLSNRAKNLFTLSSLNQANKWLAGQDADRFGENTESTVIAYW RQVSEVIPDWQKLMRGATTAGDLRKETVHAHGVMLQAFGVLGARLITAKPDGWAETLAPLAEINWSKRNAQLWRPRVMGA RGMDGSVKSVHLAANVLVAAVGLPLNEKEQANEDDYLASLAEEKVVA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41067; Mature: 40936
Theoretical pI: Translated: 5.33; Mature: 5.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGNFYNFAAIRGVQAGTEYYVIMVPLKMVPKIFEFDSQELPADLRAQRVLSNVRVPQIA CCCCEEEHHHHHCCCCCCCEEEEEECHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHH SYLSENFEEYTLSSLCASVDGDLEFSPASDGLQFRNVGELRLSMTARIILNDGQHRRAAI HHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHEEEEEEEECCCCHHHHHH EEALKTRPKLENETISVVLFLDEGLERCQQMFADLNKNAVRPSGSLNVLYDRRNPLARLS HHHHHCCCCCCCCEEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCHHHHHH TRVLEDIPFFQEFTELEKTSLSNRAKNLFTLSSLNQANKWLAGQDADRFGENTESTVIAY HHHHHHCHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHCCCCCCHHHCCCCCCHHHHHH WRQVSEVIPDWQKLMRGATTAGDLRKETVHAHGVMLQAFGVLGARLITAKPDGWAETLAP HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHH LAEINWSKRNAQLWRPRVMGARGMDGSVKSVHLAANVLVAAVGLPLNEKEQANEDDYLAS HHHCCCCCCCCHHCCHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHCCCCHHHHHH LAEEKVVA HHHHHCCC >Mature Secondary Structure SGNFYNFAAIRGVQAGTEYYVIMVPLKMVPKIFEFDSQELPADLRAQRVLSNVRVPQIA CCCEEEHHHHHCCCCCCCEEEEEECHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHH SYLSENFEEYTLSSLCASVDGDLEFSPASDGLQFRNVGELRLSMTARIILNDGQHRRAAI HHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHEEEEEEEECCCCHHHHHH EEALKTRPKLENETISVVLFLDEGLERCQQMFADLNKNAVRPSGSLNVLYDRRNPLARLS HHHHHCCCCCCCCEEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCHHHHHH TRVLEDIPFFQEFTELEKTSLSNRAKNLFTLSSLNQANKWLAGQDADRFGENTESTVIAY HHHHHHCHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHCCCCCCHHHCCCCCCHHHHHH WRQVSEVIPDWQKLMRGATTAGDLRKETVHAHGVMLQAFGVLGARLITAKPDGWAETLAP HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHH LAEINWSKRNAQLWRPRVMGARGMDGSVKSVHLAANVLVAAVGLPLNEKEQANEDDYLAS HHHCCCCCCCCHHCCHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHCCCCHHHHHH LAEEKVVA HHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA