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The map label for this gene is paiB [H]

Identifier: 110677945

GI number: 110677945

Start: 544574

End: 545200

Strand: Direct

Name: paiB [H]

Synonym: RD1_0561

Alternate gene names: 110677945

Gene position: 544574-545200 (Clockwise)

Preceding gene: 110677942

Following gene: 110677946

Centisome position: 13.18

GC content: 57.26

Gene sequence:

>627_bases
ATGCACCCCAACCCGGCTTTTCACACGCGACAAGAGATCGAAAACCTTGCCTTCGCGCGTGAACGCGGGTTCGGCGTGCT
TGCGGTGAATGGTGAAGATGGCCCGCTTTTGTCCCATATCCCGTTTCTGGTGGATGAGGACGGCAAAACGGTCTGGCTGC
ATCTTGTACGCTCCAACCCGATTGTGCGCGCGCTGAGTGAGAAACGCCCGGCGAAGATCGCCGTGTCGGGCCCCGACAGT
TACATTTCGCCCGACTGGTATGGTGTGATTGATCAGGTGCCCACATGGAATTACGTGGCTGTGCACCTCACCGGAGAGCT
TGAACTGCGCCCGCAAGAGGAATTGCACGGCATTCTGGATCGGCAATCTGCACATTTCGAGGATCGACTTGTTCCCAAAA
CACCATGGACGACAGATAAGATGTCGGATGGCGTGATGACCCGCATGATGCGCGCGATTGTGCCTTGCCGGATGGTTCTG
TCGGCGGTTGAGGGAACTTGGAAGCTCAATCAGAACAAAGCGCCCGAAGTGCGACAGAGCGCTGCCGATCATGTTGACGC
CTATGGTCAGGGCACCGAGTTGAAACTGTTGTCGGCACTGATGCGCGCGGTGGATGGACAGACCTAG

Upstream 100 bases:

>100_bases
CGCCGGTGGGGAATTTCACCCCGCCCTGAGAATACGCCAAGGTTGCCAATAGTTTCAAAAATCTGCAAGACCAAATGCGA
CACACTGCGAAGGCAAAACG

Downstream 100 bases:

>100_bases
CTGCTCTGATACCATCCATATATACATAGTGAGGGCCATCCGATGAGACTATACCATTCGCCAGCGTCACCGTTCGTGCG
CAAAGTCACCGTTTTGCTGC

Product: transcriptional regulator, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
MHPNPAFHTRQEIENLAFARERGFGVLAVNGEDGPLLSHIPFLVDEDGKTVWLHLVRSNPIVRALSEKRPAKIAVSGPDS
YISPDWYGVIDQVPTWNYVAVHLTGELELRPQEELHGILDRQSAHFEDRLVPKTPWTTDKMSDGVMTRMMRAIVPCRMVL
SAVEGTWKLNQNKAPEVRQSAADHVDAYGQGTELKLLSALMRAVDGQT

Sequences:

>Translated_208_residues
MHPNPAFHTRQEIENLAFARERGFGVLAVNGEDGPLLSHIPFLVDEDGKTVWLHLVRSNPIVRALSEKRPAKIAVSGPDS
YISPDWYGVIDQVPTWNYVAVHLTGELELRPQEELHGILDRQSAHFEDRLVPKTPWTTDKMSDGVMTRMMRAIVPCRMVL
SAVEGTWKLNQNKAPEVRQSAADHVDAYGQGTELKLLSALMRAVDGQT
>Mature_208_residues
MHPNPAFHTRQEIENLAFARERGFGVLAVNGEDGPLLSHIPFLVDEDGKTVWLHLVRSNPIVRALSEKRPAKIAVSGPDS
YISPDWYGVIDQVPTWNYVAVHLTGELELRPQEELHGILDRQSAHFEDRLVPKTPWTTDKMSDGVMTRMMRAIVPCRMVL
SAVEGTWKLNQNKAPEVRQSAADHVDAYGQGTELKLLSALMRAVDGQT

Specific function: Involved in the reduction of extracellular and cell- associated protease levels, as well as in the reduced levels of alpha-amylase, levansucrase, alkaline phosphatase and sporulation inhibition, when present in high copy number [H]

COG id: COG2808

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the paiB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007396
- InterPro:   IPR012349
- InterPro:   IPR009002 [H]

Pfam domain/function: PF04299 FMN_bind_2 [H]

EC number: NA

Molecular weight: Translated: 23285; Mature: 23285

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHPNPAFHTRQEIENLAFARERGFGVLAVNGEDGPLLSHIPFLVDEDGKTVWLHLVRSNP
CCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHCCEEEECCCCEEEEEEECCCC
IVRALSEKRPAKIAVSGPDSYISPDWYGVIDQVPTWNYVAVHLTGELELRPQEELHGILD
HHHHHHCCCCCEEEEECCCCCCCCCHHHHHHCCCCCCEEEEEEECCEECCCHHHHHHHHH
RQSAHFEDRLVPKTPWTTDKMSDGVMTRMMRAIVPCRMVLSAVEGTWKLNQNKAPEVRQS
CCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHH
AADHVDAYGQGTELKLLSALMRAVDGQT
HHHHHHHCCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MHPNPAFHTRQEIENLAFARERGFGVLAVNGEDGPLLSHIPFLVDEDGKTVWLHLVRSNP
CCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHCCEEEECCCCEEEEEEECCCC
IVRALSEKRPAKIAVSGPDSYISPDWYGVIDQVPTWNYVAVHLTGELELRPQEELHGILD
HHHHHHCCCCCEEEEECCCCCCCCCHHHHHHCCCCCCEEEEEEECCEECCCHHHHHHHHH
RQSAHFEDRLVPKTPWTTDKMSDGVMTRMMRAIVPCRMVLSAVEGTWKLNQNKAPEVRQS
CCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHH
AADHVDAYGQGTELKLLSALMRAVDGQT
HHHHHHHCCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2108124; 9384377 [H]