| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
Click here to switch to the map view.
The map label for this gene is ilvE [H]
Identifier: 110677937
GI number: 110677937
Start: 536900
End: 537769
Strand: Direct
Name: ilvE [H]
Synonym: RD1_0553
Alternate gene names: 110677937
Gene position: 536900-537769 (Clockwise)
Preceding gene: 110677931
Following gene: 110677938
Centisome position: 12.99
GC content: 56.55
Gene sequence:
>870_bases ATGGCCGGTGCCTATAATGATCGTGATGGACATATCTGGATGGATGGCCAGATGGTAGATTGGCGCGATGCAAATGTGCA TATTCTGACCCATGCCATGCATTACGCGTCCTCCGTTTTCGAAGGGGAGCGGGCCTACAACGGCAAGATTTTCAAAAGCC GCGAACATTCGGAGCGTCTTAAACGGTCTGCTCAGATGATTGATTTTGAAATTCCTTATACCGTTGACGAGATCGAAGCC GCCAAGGTCGAGGTGCTGGAAAAATCCGGGTTGCAGGACGCCTATGTGCGCGCCATCGCATGGCGCGGCGCCGGCGAGGA CATGGGGGTCGCTTCGGCGCGTAACCCGGTCAGGCTCGCGATTGCGGCATGGGAATGGGGTGCCTATTACGGCGACGCCA AGATGAAGGGTGCAAAGCTGGACATCTCCAAATGGAAACGCCCCAGCCCTGAAACCATTCCAAGCCATGCCAAGGCGGCC GGTCTTTACATGATCTGCACCATGTCGAAACACGCGGCAGAGGCCAAGGGATGTTCGGACGCCATGATGTTTGACTATCG TGGCTATGTGGCCGAGGCGACGGGAGCCAACGTCTTTTTCGTGAAGGACGGCGAAGTACACACCCCTGACCCTGACTGTT TCCTGAACGGGATCACACGGCAGACAGTGATCGGGATGCTGCGCGAGAAGCAGATCAAGGTGCATGAACGCCACATCATG CCAGAGGAACTTGAAGGGTTTGAGCAATGCTGGCTGACGGGCACAGCCGCCGAAGTCACGCCCGTGGGTCAGATTGGCGA TTACAATTTCGAGGTCGGCAACCTGACCCGTGACATCGCGCAAAGCTACGAAACCCTCGTTCGGGCCTGA
Upstream 100 bases:
>100_bases AGGGATATCGAATCGCAGGTTTTGCGCAATTTTATGTCCGATGCGGACCAATCGGCGCAACTTATGAAAAATGCGATGGG GAATCAGGGAAGGAAAAACC
Downstream 100 bases:
>100_bases CCGAATGGACTACGCGGCCTTCGCTGTTGAATGGGAGGCCGCGTGGAATTCTCATGCCATCGACCGGATCATGGCGCATT ATGCGCTCGATGTTGTGTTT
Product: branched-chain amino acid aminotransferase
Products: NA
Alternate protein names: BCAT; Transaminase B [H]
Number of amino acids: Translated: 289; Mature: 288
Protein sequence:
>289_residues MAGAYNDRDGHIWMDGQMVDWRDANVHILTHAMHYASSVFEGERAYNGKIFKSREHSERLKRSAQMIDFEIPYTVDEIEA AKVEVLEKSGLQDAYVRAIAWRGAGEDMGVASARNPVRLAIAAWEWGAYYGDAKMKGAKLDISKWKRPSPETIPSHAKAA GLYMICTMSKHAAEAKGCSDAMMFDYRGYVAEATGANVFFVKDGEVHTPDPDCFLNGITRQTVIGMLREKQIKVHERHIM PEELEGFEQCWLTGTAAEVTPVGQIGDYNFEVGNLTRDIAQSYETLVRA
Sequences:
>Translated_289_residues MAGAYNDRDGHIWMDGQMVDWRDANVHILTHAMHYASSVFEGERAYNGKIFKSREHSERLKRSAQMIDFEIPYTVDEIEA AKVEVLEKSGLQDAYVRAIAWRGAGEDMGVASARNPVRLAIAAWEWGAYYGDAKMKGAKLDISKWKRPSPETIPSHAKAA GLYMICTMSKHAAEAKGCSDAMMFDYRGYVAEATGANVFFVKDGEVHTPDPDCFLNGITRQTVIGMLREKQIKVHERHIM PEELEGFEQCWLTGTAAEVTPVGQIGDYNFEVGNLTRDIAQSYETLVRA >Mature_288_residues AGAYNDRDGHIWMDGQMVDWRDANVHILTHAMHYASSVFEGERAYNGKIFKSREHSERLKRSAQMIDFEIPYTVDEIEAA KVEVLEKSGLQDAYVRAIAWRGAGEDMGVASARNPVRLAIAAWEWGAYYGDAKMKGAKLDISKWKRPSPETIPSHAKAAG LYMICTMSKHAAEAKGCSDAMMFDYRGYVAEATGANVFFVKDGEVHTPDPDCFLNGITRQTVIGMLREKQIKVHERHIMP EELEGFEQCWLTGTAAEVTPVGQIGDYNFEVGNLTRDIAQSYETLVRA
Specific function: Acts on leucine, isoleucine and valine [H]
COG id: COG0115
COG function: function code EH; Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family [H]
Homologues:
Organism=Escherichia coli, GI48994963, Length=290, Percent_Identity=36.551724137931, Blast_Score=183, Evalue=1e-47,
Paralogues:
None
Copy number: 2342 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 11,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001544 - InterPro: IPR018300 - InterPro: IPR005785 [H]
Pfam domain/function: PF01063 Aminotran_4 [H]
EC number: =2.6.1.42 [H]
Molecular weight: Translated: 32364; Mature: 32233
Theoretical pI: Translated: 5.80; Mature: 5.80
Prosite motif: PS00770 AA_TRANSFER_CLASS_4
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 5.9 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGAYNDRDGHIWMDGQMVDWRDANVHILTHAMHYASSVFEGERAYNGKIFKSREHSERL CCCCCCCCCCEEEECCEEECCCCCCEEEEHHHHHHHHHHHCCCHHCCCCEEECCHHHHHH KRSAQMIDFEIPYTVDEIEAAKVEVLEKSGLQDAYVRAIAWRGAGEDMGVASARNPVRLA HHHHHEEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHEECCCCCCCCCCCCCCCEEEE IAAWEWGAYYGDAKMKGAKLDISKWKRPSPETIPSHAKAAGLYMICTMSKHAAEAKGCSD EEEEECCCEECCCCCCCCEEEHHHCCCCCCCCCCCCHHHCCEEEEEECCHHHHHHCCCCC AMMFDYRGYVAEATGANVFFVKDGEVHTPDPDCFLNGITRQTVIGMLREKQIKVHERHIM CEEEECCCEEEECCCCEEEEEECCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC PEELEGFEQCWLTGTAAEVTPVGQIGDYNFEVGNLTRDIAQSYETLVRA HHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCC >Mature Secondary Structure AGAYNDRDGHIWMDGQMVDWRDANVHILTHAMHYASSVFEGERAYNGKIFKSREHSERL CCCCCCCCCEEEECCEEECCCCCCEEEEHHHHHHHHHHHCCCHHCCCCEEECCHHHHHH KRSAQMIDFEIPYTVDEIEAAKVEVLEKSGLQDAYVRAIAWRGAGEDMGVASARNPVRLA HHHHHEEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHEECCCCCCCCCCCCCCCEEEE IAAWEWGAYYGDAKMKGAKLDISKWKRPSPETIPSHAKAAGLYMICTMSKHAAEAKGCSD EEEEECCCEECCCCCCCCEEEHHHCCCCCCCCCCCCHHHCCEEEEEECCHHHHHHCCCCC AMMFDYRGYVAEATGANVFFVKDGEVHTPDPDCFLNGITRQTVIGMLREKQIKVHERHIM CEEEECCCEEEECCCCEEEEEECCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC PEELEGFEQCWLTGTAAEVTPVGQIGDYNFEVGNLTRDIAQSYETLVRA HHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9371463 [H]