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The map label for this gene is yocS [H]

Identifier: 110677931

GI number: 110677931

Start: 531393

End: 532274

Strand: Direct

Name: yocS [H]

Synonym: RD1_0547

Alternate gene names: 110677931

Gene position: 531393-532274 (Clockwise)

Preceding gene: 110677930

Following gene: 110677937

Centisome position: 12.86

GC content: 57.03

Gene sequence:

>882_bases
ATGGTCGGAGCATTTGAACAGGCGATCCTCGCGTTGATGATTTTCGTGATCATGCTGGGGATGGGGGCCTCGCTGACGCC
GCGCGATTTTTATCTGGCCTTGCGGCGACCCTACGGCCTCGCCATCGGCGTGGTCGCGCAATATGGGTTCATGCCCCTGA
TCGGCTTTTTGCTGGCGACCCTGCTGAATGTCCCGCCCGCTATTGCGATTGGCATTCTGATCATGTCCTGCATGCCGGGG
GGGACGACCTCGAACATCTTTACCTATTTTTCCAAAGGCAATCTGGCGCTGTCCGTGTTGATGACGGTGACGTCGACCGT
GACAGGCGTGATCATGATCCCGATTGTTTTGCTGGTTTACGCAACCGCGCTTGAACTTGAGATACCGCGCGAAAACATCA
TCGCCACTTTGGTCCTGCTGCTCGTTCCCGTGGCGATCGGCATGGTGCTGCGCAAGATCAGCGCGAATGTCGGCGCTGTG
ACGGAGTTTTTCGGCTCTGCTCTGGCGCTGTTCTTTATTCTGTTCCTCATCGTCAGCTGGATACCGCGCAACTGGCAATT
CCTGCTGGAAACCAGCGCGGCGACCTATTTCGCATCCATCGCATTGGGCGTTTTCGGGATCACCATCGGGTACATCTTTG
CCCGCGCGCTGCGTCTGCACCCCAGAAATGCGCGCACGGTCGCCTTGGAAACGGGAATTCAGAACGGACCCTTGGCGATT
GCGATTATCGTTTTTACCTTTTCGGGGGCCGAACAACAGGCCGTCACTGCGGTGCCCGTGCTCTATTCGCTGTTTATCGT
GATTGTCGCCACATTGGTCACGCTGGTCTTCCGGCGCGCCAATACAGCCGCGGAGCAAAAGATGCCGGACAGTCTGATTT
AG

Upstream 100 bases:

>100_bases
TTGAGTTCCGCGATGAGCTGCCGAAATCCAACGTCGGGAAAATCCTCAGAAAAGACCTGCGCGCAAGCGAAATCGCGCAT
CAGGCGCAGGAGTAACAGAC

Downstream 100 bases:

>100_bases
AGCGTCTGGCGAAACACGTGAAACATCAAATATCGGGTAACGCCTTGAATCCTTTGATATAGGGCAGCGTTACGTGATCG
AGGTGTTCCGCATGACGCTT

Product: putative sodium/bile acid symporter family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MVGAFEQAILALMIFVIMLGMGASLTPRDFYLALRRPYGLAIGVVAQYGFMPLIGFLLATLLNVPPAIAIGILIMSCMPG
GTTSNIFTYFSKGNLALSVLMTVTSTVTGVIMIPIVLLVYATALELEIPRENIIATLVLLLVPVAIGMVLRKISANVGAV
TEFFGSALALFFILFLIVSWIPRNWQFLLETSAATYFASIALGVFGITIGYIFARALRLHPRNARTVALETGIQNGPLAI
AIIVFTFSGAEQQAVTAVPVLYSLFIVIVATLVTLVFRRANTAAEQKMPDSLI

Sequences:

>Translated_293_residues
MVGAFEQAILALMIFVIMLGMGASLTPRDFYLALRRPYGLAIGVVAQYGFMPLIGFLLATLLNVPPAIAIGILIMSCMPG
GTTSNIFTYFSKGNLALSVLMTVTSTVTGVIMIPIVLLVYATALELEIPRENIIATLVLLLVPVAIGMVLRKISANVGAV
TEFFGSALALFFILFLIVSWIPRNWQFLLETSAATYFASIALGVFGITIGYIFARALRLHPRNARTVALETGIQNGPLAI
AIIVFTFSGAEQQAVTAVPVLYSLFIVIVATLVTLVFRRANTAAEQKMPDSLI
>Mature_293_residues
MVGAFEQAILALMIFVIMLGMGASLTPRDFYLALRRPYGLAIGVVAQYGFMPLIGFLLATLLNVPPAIAIGILIMSCMPG
GTTSNIFTYFSKGNLALSVLMTVTSTVTGVIMIPIVLLVYATALELEIPRENIIATLVLLLVPVAIGMVLRKISANVGAV
TEFFGSALALFFILFLIVSWIPRNWQFLLETSAATYFASIALGVFGITIGYIFARALRLHPRNARTVALETGIQNGPLAI
AIIVFTFSGAEQQAVTAVPVLYSLFIVIVATLVTLVFRRANTAAEQKMPDSLI

Specific function: Unknown

COG id: COG0385

COG function: function code R; Predicted Na+-dependent transporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:bile acid symporter family [H]

Homologues:

Organism=Homo sapiens, GI4506973, Length=300, Percent_Identity=31.6666666666667, Blast_Score=147, Evalue=1e-35,
Organism=Homo sapiens, GI37537552, Length=293, Percent_Identity=31.740614334471, Blast_Score=127, Evalue=2e-29,
Organism=Homo sapiens, GI4506971, Length=263, Percent_Identity=31.9391634980989, Blast_Score=119, Evalue=3e-27,
Organism=Homo sapiens, GI58219066, Length=242, Percent_Identity=28.9256198347107, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI24308414, Length=281, Percent_Identity=28.8256227758007, Blast_Score=96, Evalue=4e-20,
Organism=Homo sapiens, GI215422368, Length=240, Percent_Identity=27.0833333333333, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI215422370, Length=240, Percent_Identity=27.0833333333333, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI9790143, Length=240, Percent_Identity=27.0833333333333, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI115533076, Length=97, Percent_Identity=37.1134020618557, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI18859699, Length=255, Percent_Identity=29.8039215686275, Blast_Score=74, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004710
- InterPro:   IPR002657 [H]

Pfam domain/function: PF01758 SBF [H]

EC number: NA

Molecular weight: Translated: 31494; Mature: 31494

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVGAFEQAILALMIFVIMLGMGASLTPRDFYLALRRPYGLAIGVVAQYGFMPLIGFLLAT
CCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
LLNVPPAIAIGILIMSCMPGGTTSNIFTYFSKGNLALSVLMTVTSTVTGVIMIPIVLLVY
HHCCCHHHHHHHHHHHCCCCCCCCHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ATALELEIPRENIIATLVLLLVPVAIGMVLRKISANVGAVTEFFGSALALFFILFLIVSW
HHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
IPRNWQFLLETSAATYFASIALGVFGITIGYIFARALRLHPRNARTVALETGIQNGPLAI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCEE
AIIVFTFSGAEQQAVTAVPVLYSLFIVIVATLVTLVFRRANTAAEQKMPDSLI
EEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCC
>Mature Secondary Structure
MVGAFEQAILALMIFVIMLGMGASLTPRDFYLALRRPYGLAIGVVAQYGFMPLIGFLLAT
CCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
LLNVPPAIAIGILIMSCMPGGTTSNIFTYFSKGNLALSVLMTVTSTVTGVIMIPIVLLVY
HHCCCHHHHHHHHHHHCCCCCCCCHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ATALELEIPRENIIATLVLLLVPVAIGMVLRKISANVGAVTEFFGSALALFFILFLIVSW
HHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
IPRNWQFLLETSAATYFASIALGVFGITIGYIFARALRLHPRNARTVALETGIQNGPLAI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCEE
AIIVFTFSGAEQQAVTAVPVLYSLFIVIVATLVTLVFRRANTAAEQKMPDSLI
EEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]