| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is 110677747
Identifier: 110677747
GI number: 110677747
Start: 336530
End: 337429
Strand: Direct
Name: 110677747
Synonym: RD1_0345
Alternate gene names: NA
Gene position: 336530-337429 (Clockwise)
Preceding gene: 110677746
Following gene: 110677748
Centisome position: 8.14
GC content: 61.89
Gene sequence:
>900_bases TTGCAGGCCGCACCACTGGCGGCGGAGGCACCGGAGTGGGTGCATCTGATGCCATCGGGTGCCATATCCGGGCGCGATGG GCGCAGCTACACCGTGAGCAACCCGGACGCCTTGGTCGCGGCCTTTCACGCCCGTGGCGTCGATCTGCCCATCGACTACG AGCATCAATCCGAGACGCACAAGGAAACGCGCGTCGGGCCGGTGCCTGTGGCGGGCTGGATCAAGGACATGAAGGCCCGC GCGGATGGCATCTGGGGCCGTGTTGAATGGACCGCAGCCGCGCGCGACCTGATCAGCCAGAAAGCCTATCGCTATCTCAG CCCGGTGATGATGCACCGCAAGGATGACAAAGAAGTGCTGCGTCTGAAGGGCGCGGGCCTTGTGCATCACCCCAACCTTA CCCTTACCGCTCTTGCGTCTCAGGAGGACACCATGGACGATACACGCCCTTTCATGCACAAGATTGCAAAGCGTCTCGGC CTTGCGGATGGTGCCAGCGAAGACGAGATCATGCAGACGCTCGAAGACGCGCTTGGCAAGACGCCTGACCCGGAAAAATA TGTGCCCATCGCGGCGATGCAAAGCCTGATGGATGACCGTGCCCAGACGGCTACTGCCATGTCTGAAAGCCGTGCCCTGG CAAAGGTCGAGGACGCGCTTGAAAAGGGCCACATAACGCCGGGGATGAAAGACTGGGCCACGTCGCTTTGCCGCCAGAAC GAGGCCAGTTTTGACGCCTTCCTTGAGCGCTCAGGCAAGGTGTTTTCCAAGCTGCTGGAACCGACACACACCACGGCCCA CCCGCCCAGTGTTCAGACCAGCACCGCGCGCGCCGAAAGCGAGATGGCGGTGTCGATCTGCCGCCAACTGGGGCTGGAAG AAACGGCTCTGAATTCATGA
Upstream 100 bases:
>100_bases AATTCAGTACGGGCGGCGGCACCAACCCTTGGCGCGGCACCGCTGAATTGATCGTCACCCCATTTCTGGCGGGCTGATCG TGGCTGACCTGAGCACCAGC
Downstream 100 bases:
>100_bases CATTCGCCGGGGCTGCTGTTGGTGACGGCCCCGGCGATGTGTGCGGCGTGTTCACTCATGCCCCGCACCCCGGCCCTCTG GCGTTCGTTCATTCCGTCAG
Product: hypothetical protein
Products: NA
Alternate protein names: I Protein; Prophage MuSo2 Protein; Mu-Like Prophage I Protein-Like Protein; Mu-Like Prophage I Protein-Like; Mu-Like Prophage FluMu I Protein; Prophage MuSo2 ; Protease Proteins; Mu Bacteriophage Protein I; Mu-Like Prophage Flumu I Protein; Phage Protease
Number of amino acids: Translated: 299; Mature: 299
Protein sequence:
>299_residues MQAAPLAAEAPEWVHLMPSGAISGRDGRSYTVSNPDALVAAFHARGVDLPIDYEHQSETHKETRVGPVPVAGWIKDMKAR ADGIWGRVEWTAAARDLISQKAYRYLSPVMMHRKDDKEVLRLKGAGLVHHPNLTLTALASQEDTMDDTRPFMHKIAKRLG LADGASEDEIMQTLEDALGKTPDPEKYVPIAAMQSLMDDRAQTATAMSESRALAKVEDALEKGHITPGMKDWATSLCRQN EASFDAFLERSGKVFSKLLEPTHTTAHPPSVQTSTARAESEMAVSICRQLGLEETALNS
Sequences:
>Translated_299_residues MQAAPLAAEAPEWVHLMPSGAISGRDGRSYTVSNPDALVAAFHARGVDLPIDYEHQSETHKETRVGPVPVAGWIKDMKAR ADGIWGRVEWTAAARDLISQKAYRYLSPVMMHRKDDKEVLRLKGAGLVHHPNLTLTALASQEDTMDDTRPFMHKIAKRLG LADGASEDEIMQTLEDALGKTPDPEKYVPIAAMQSLMDDRAQTATAMSESRALAKVEDALEKGHITPGMKDWATSLCRQN EASFDAFLERSGKVFSKLLEPTHTTAHPPSVQTSTARAESEMAVSICRQLGLEETALNS >Mature_299_residues MQAAPLAAEAPEWVHLMPSGAISGRDGRSYTVSNPDALVAAFHARGVDLPIDYEHQSETHKETRVGPVPVAGWIKDMKAR ADGIWGRVEWTAAARDLISQKAYRYLSPVMMHRKDDKEVLRLKGAGLVHHPNLTLTALASQEDTMDDTRPFMHKIAKRLG LADGASEDEIMQTLEDALGKTPDPEKYVPIAAMQSLMDDRAQTATAMSESRALAKVEDALEKGHITPGMKDWATSLCRQN EASFDAFLERSGKVFSKLLEPTHTTAHPPSVQTSTARAESEMAVSICRQLGLEETALNS
Specific function: Unknown
COG id: COG4388
COG function: function code R; Mu-like prophage I protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32753; Mature: 32753
Theoretical pI: Translated: 5.96; Mature: 5.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQAAPLAAEAPEWVHLMPSGAISGRDGRSYTVSNPDALVAAFHARGVDLPIDYEHQSETH CCCCCCCCCCCCEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCCCCCCCCCCCHHH KETRVGPVPVAGWIKDMKARADGIWGRVEWTAAARDLISQKAYRYLSPVMMHRKDDKEVL HHHCCCCCCHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH RLKGAGLVHHPNLTLTALASQEDTMDDTRPFMHKIAKRLGLADGASEDEIMQTLEDALGK HHCCCCEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCC TPDPEKYVPIAAMQSLMDDRAQTATAMSESRALAKVEDALEKGHITPGMKDWATSLCRQN CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC EASFDAFLERSGKVFSKLLEPTHTTAHPPSVQTSTARAESEMAVSICRQLGLEETALNS CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHCCC >Mature Secondary Structure MQAAPLAAEAPEWVHLMPSGAISGRDGRSYTVSNPDALVAAFHARGVDLPIDYEHQSETH CCCCCCCCCCCCEEEECCCCCCCCCCCCEEEECCCHHHHHHHHHCCCCCCCCCCCCCHHH KETRVGPVPVAGWIKDMKARADGIWGRVEWTAAARDLISQKAYRYLSPVMMHRKDDKEVL HHHCCCCCCHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH RLKGAGLVHHPNLTLTALASQEDTMDDTRPFMHKIAKRLGLADGASEDEIMQTLEDALGK HHCCCCEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCC TPDPEKYVPIAAMQSLMDDRAQTATAMSESRALAKVEDALEKGHITPGMKDWATSLCRQN CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC EASFDAFLERSGKVFSKLLEPTHTTAHPPSVQTSTARAESEMAVSICRQLGLEETALNS CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA