| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is 110677748
Identifier: 110677748
GI number: 110677748
Start: 337614
End: 337979
Strand: Direct
Name: 110677748
Synonym: RD1_0346
Alternate gene names: NA
Gene position: 337614-337979 (Clockwise)
Preceding gene: 110677747
Following gene: 110677749
Centisome position: 8.17
GC content: 57.92
Gene sequence:
>366_bases ATGTCGGAAATCCAGCCTCTCTGCCCACTGCCGCCAGCGCATGTCGCAACCTATGTAAATGCTATGGGTGTTGAGACGGC GATTGAATTCCTGCTGAACTTCGGCGGGGCAGAAATCCACCTCACGACGAAGCCGAGCCGCGGAGGGATGGTGGAACGTG TCATTGGCTACGAGAAAACCAAGCGCCTTGTAGAAGTGTCAATCAACAGCAAGCACCGTGTGCCGCTGGCGAACAAATGG CTGGCGCAATGCCTCTACTGCCAAGGCCTTTCAATCGCGGCCATCGCCCGCCGCGTGCGCCGTTCCGACACGACGGTGCG CAAGTATCTCAGGGGCACCAACACGCCAAGGTCAATGAAAAGGTAG
Upstream 100 bases:
>100_bases TCGTTCATTCCGTCAGAGGGCTGCATTTCAAACGCTGGCCATATACATTTCAAATAGAGGTATTATAATACCTCTATTGT GTTAGATTAAGGTTTGCCCA
Downstream 100 bases:
>100_bases CTGCCATGATTGAAATCCAAATTGACCAAGATGAAATTCGCGAGGCTCTATTGGATCTGGGTGAAAAACTCAATGATATG ACGCCTGTGTTTCAGAACAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 121; Mature: 120
Protein sequence:
>121_residues MSEIQPLCPLPPAHVATYVNAMGVETAIEFLLNFGGAEIHLTTKPSRGGMVERVIGYEKTKRLVEVSINSKHRVPLANKW LAQCLYCQGLSIAAIARRVRRSDTTVRKYLRGTNTPRSMKR
Sequences:
>Translated_121_residues MSEIQPLCPLPPAHVATYVNAMGVETAIEFLLNFGGAEIHLTTKPSRGGMVERVIGYEKTKRLVEVSINSKHRVPLANKW LAQCLYCQGLSIAAIARRVRRSDTTVRKYLRGTNTPRSMKR >Mature_120_residues SEIQPLCPLPPAHVATYVNAMGVETAIEFLLNFGGAEIHLTTKPSRGGMVERVIGYEKTKRLVEVSINSKHRVPLANKWL AQCLYCQGLSIAAIARRVRRSDTTVRKYLRGTNTPRSMKR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13537; Mature: 13406
Theoretical pI: Translated: 10.79; Mature: 10.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEIQPLCPLPPAHVATYVNAMGVETAIEFLLNFGGAEIHLTTKPSRGGMVERVIGYEKT CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHH KRLVEVSINSKHRVPLANKWLAQCLYCQGLSIAAIARRVRRSDTTVRKYLRGTNTPRSMK HHEEEEECCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHCCCCCCCCC R C >Mature Secondary Structure SEIQPLCPLPPAHVATYVNAMGVETAIEFLLNFGGAEIHLTTKPSRGGMVERVIGYEKT CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHH KRLVEVSINSKHRVPLANKWLAQCLYCQGLSIAAIARRVRRSDTTVRKYLRGTNTPRSMK HHEEEEECCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHCCCCCCCCC R C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA