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The map label for this gene is recF [H]

Identifier: 110677618

GI number: 110677618

Start: 207640

End: 208740

Strand: Direct

Name: recF [H]

Synonym: RD1_0210

Alternate gene names: 110677618

Gene position: 207640-208740 (Clockwise)

Preceding gene: 110677617

Following gene: 110677619

Centisome position: 5.02

GC content: 63.4

Gene sequence:

>1101_bases
ATGGCCCTGCATCTGACCGATCTCATGGTCTCGCACTTCAGGTCCCACCGCGTGGCACGTTTTGCGCTGGACCAGCGGCC
CGTTGCCCTGTTCGGGCCGAACGGTGCGGGCAAGACGAACATCCTCGAAGCGGTTTCTCTTCTGTCCCCCGGCAGAGGTC
TGCGTCGTGCCAGCGCGCAGGACATGACCCGGCGGCCAGAGGCTCTGGGCTGGAAGATCACGGCACAGGTAATGTCGCTG
GGCCAGCATCAGGAGGTTGAGACATGGTCGCAGGAAGGGGCCGCCCGTCAGGTCAGGATCAACGGCAAGACCGCTGCACA
GACCGCGCTGGGGCGCGTATCGCGGGTTCTGTGGCTGATCCCCTCCATGGACCGTTTGTGGATCGAAGGGGCGGAGGGGC
GCAGGCGCTTTCTGGACCGCATGACGCTGAGTTTCGAGCCGGGCCATGCAGATGCCACGCTGGCTTATGAAAAGGCAATG
CGCGAGCGCAACCGTTTGCTCAAGAATATGGTTCGGGAGCCGTCGTGGTACCAGGCGCTTGAGTTGCAAATGGCACAGGC
AGGCGTGGTGGTTGACCAGAACCGGCGGATGGCCCTGCGCCAACTGGCAGCAGCGCAATCAGATGCGACCACCGCCTTTC
CTGCGGCTGAACTTGAGTTGATCCACAATGATGCGCCCCTGCCCGATGGGGAAACCGCCCTGCGCGATGCTTTTGCAGAC
AGCCGCAGCCGGGACCTCGCGGCGGGTCGCACACTAGTCGGGCCCCATCGCGCGGATCTGATCGGCACCTATCGCGCCAA
GGGCGTTGCGGCCAGGGATTGCTCGACAGGCGAACAGAAAGCCTTGCTGGTCTCTCTGATCCTCGCCAATGCCCGCGCGC
TGGCACAGGACTCCGGTGCCGCACCACTGCTTTTGCTAGATGAGGTGGCGGCGCATCTGGATGCGGACAGGCGTGCCGCA
TTGTACGATGAAATCACGGCACTCGGCGCGCAGGCCTGGATGACGGGCACGGAAAAGAGCCTGTTTGATACGCTGGGCGA
CGGCGCGCAGTATTTCGAAATCACCGAAACGGACGGTGCATCAACGGTGCAGGACGGATGA

Upstream 100 bases:

>100_bases
TGACCTGTCTGCCGTGTATGTCGTCATGCCGATGCGCGTCTGATGCCTTGCTCTTGTTGCCCTTGGCCGGGATAGCCACG
AACGAGCTGGGGGGCATTTC

Downstream 100 bases:

>100_bases
CAATCTCCACCGCCGACCTGTTGCTTTACGCGGGTGCATTGATCATCTTGTTTCTGACACCGGGGCCGGTCTGGCTGGCA
CTGATGGCGCGTGCGCTGTC

Product: recombination protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 366; Mature: 365

Protein sequence:

>366_residues
MALHLTDLMVSHFRSHRVARFALDQRPVALFGPNGAGKTNILEAVSLLSPGRGLRRASAQDMTRRPEALGWKITAQVMSL
GQHQEVETWSQEGAARQVRINGKTAAQTALGRVSRVLWLIPSMDRLWIEGAEGRRRFLDRMTLSFEPGHADATLAYEKAM
RERNRLLKNMVREPSWYQALELQMAQAGVVVDQNRRMALRQLAAAQSDATTAFPAAELELIHNDAPLPDGETALRDAFAD
SRSRDLAAGRTLVGPHRADLIGTYRAKGVAARDCSTGEQKALLVSLILANARALAQDSGAAPLLLLDEVAAHLDADRRAA
LYDEITALGAQAWMTGTEKSLFDTLGDGAQYFEITETDGASTVQDG

Sequences:

>Translated_366_residues
MALHLTDLMVSHFRSHRVARFALDQRPVALFGPNGAGKTNILEAVSLLSPGRGLRRASAQDMTRRPEALGWKITAQVMSL
GQHQEVETWSQEGAARQVRINGKTAAQTALGRVSRVLWLIPSMDRLWIEGAEGRRRFLDRMTLSFEPGHADATLAYEKAM
RERNRLLKNMVREPSWYQALELQMAQAGVVVDQNRRMALRQLAAAQSDATTAFPAAELELIHNDAPLPDGETALRDAFAD
SRSRDLAAGRTLVGPHRADLIGTYRAKGVAARDCSTGEQKALLVSLILANARALAQDSGAAPLLLLDEVAAHLDADRRAA
LYDEITALGAQAWMTGTEKSLFDTLGDGAQYFEITETDGASTVQDG
>Mature_365_residues
ALHLTDLMVSHFRSHRVARFALDQRPVALFGPNGAGKTNILEAVSLLSPGRGLRRASAQDMTRRPEALGWKITAQVMSLG
QHQEVETWSQEGAARQVRINGKTAAQTALGRVSRVLWLIPSMDRLWIEGAEGRRRFLDRMTLSFEPGHADATLAYEKAMR
ERNRLLKNMVREPSWYQALELQMAQAGVVVDQNRRMALRQLAAAQSDATTAFPAAELELIHNDAPLPDGETALRDAFADS
RSRDLAAGRTLVGPHRADLIGTYRAKGVAARDCSTGEQKALLVSLILANARALAQDSGAAPLLLLDEVAAHLDADRRAAL
YDEITALGAQAWMTGTEKSLFDTLGDGAQYFEITETDGASTVQDG

Specific function: The recF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP [H]

COG id: COG1195

COG function: function code L; Recombinational DNA repair ATPase (RecF pathway)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recF family [H]

Homologues:

Organism=Escherichia coli, GI1790135, Length=358, Percent_Identity=25.9776536312849, Blast_Score=88, Evalue=8e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR001238
- InterPro:   IPR018078
- InterPro:   IPR003395
- InterPro:   IPR007406 [H]

Pfam domain/function: PF02463 SMC_N [H]

EC number: NA

Molecular weight: Translated: 39948; Mature: 39817

Theoretical pI: Translated: 6.98; Mature: 6.98

Prosite motif: PS00618 RECF_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALHLTDLMVSHFRSHRVARFALDQRPVALFGPNGAGKTNILEAVSLLSPGRGLRRASAQ
CEEEHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHH
DMTRRPEALGWKITAQVMSLGQHQEVETWSQEGAARQVRINGKTAAQTALGRVSRVLWLI
HHHCCCHHCCHHHHHHHHHCCCCHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHC
PSMDRLWIEGAEGRRRFLDRMTLSFEPGHADATLAYEKAMRERNRLLKNMVREPSWYQAL
CCCCHHEEECCCHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
ELQMAQAGVVVDQNRRMALRQLAAAQSDATTAFPAAELELIHNDAPLPDGETALRDAFAD
HHHHHHCCEEEECCHHHHHHHHHHHCCCCCCCCCHHHHHEEECCCCCCCCHHHHHHHHHC
SRSRDLAAGRTLVGPHRADLIGTYRAKGVAARDCSTGEQKALLVSLILANARALAQDSGA
CCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
APLLLLDEVAAHLDADRRAALYDEITALGAQAWMTGTEKSLFDTLGDGAQYFEITETDGA
CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEEECCCCC
STVQDG
CCCCCC
>Mature Secondary Structure 
ALHLTDLMVSHFRSHRVARFALDQRPVALFGPNGAGKTNILEAVSLLSPGRGLRRASAQ
EEEHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHH
DMTRRPEALGWKITAQVMSLGQHQEVETWSQEGAARQVRINGKTAAQTALGRVSRVLWLI
HHHCCCHHCCHHHHHHHHHCCCCHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHC
PSMDRLWIEGAEGRRRFLDRMTLSFEPGHADATLAYEKAMRERNRLLKNMVREPSWYQAL
CCCCHHEEECCCHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
ELQMAQAGVVVDQNRRMALRQLAAAQSDATTAFPAAELELIHNDAPLPDGETALRDAFAD
HHHHHHCCEEEECCHHHHHHHHHHHCCCCCCCCCHHHHHEEECCCCCCCCHHHHHHHHHC
SRSRDLAAGRTLVGPHRADLIGTYRAKGVAARDCSTGEQKALLVSLILANARALAQDSGA
CCCCHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
APLLLLDEVAAHLDADRRAALYDEITALGAQAWMTGTEKSLFDTLGDGAQYFEITETDGA
CCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEEECCCCC
STVQDG
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA