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The map label for this gene is flgD

Identifier: 110677576

GI number: 110677576

Start: 163556

End: 164236

Strand: Direct

Name: flgD

Synonym: RD1_0164

Alternate gene names: NA

Gene position: 163556-164236 (Clockwise)

Preceding gene: 110677575

Following gene: 110677582

Centisome position: 3.96

GC content: 53.89

Gene sequence:

>681_bases
ATGGATATTTTGAACGCTCAGGCAACACAGCCGACAAGACAACTCGGGACGGCACAGGCATCAAACAGCGCTGCTTTGTC
TTCTGATTTTGAAACTTTTTTGAAAATGCTGACGGCACAGGCACGGTTTCAGGACCCTCTGGAGCCTATCGATTCCTCCG
AATATGCGGCCCAATTGGCGCAGTTCTCGATGGTGGAACAGCAAGTGTTGTCAAATGATCTGCTTACCGAATTGGGCGCT
CAACTCGGCTCAAACAGTATCGGCCAGATGGCTGCATGGATCGGCATGGAAGCGCGCACAACCGCGCCTGTGGCCTTTGA
CGGCTCGCCGATTACAGTGCTGCCAAAATCTGAAGCCGGTGCCGATGAAGCTTATCTGATTGCCTATGGACCGGACGGTT
CCGAAGTGCAAAGGCAACAGGTCACACCCGGTACCGATCCGATCGAATGGCTCGGTTTGGATGATAATGGCGCGGCCTTG
CCAATTGGAAACTACAGCTTTGTGGTCGAAAGTCGCGCAGTCGGTCAAACGATCGGGACGTCCCCTGCCGAGACATACAG
CCGAATTACCGAAGCGCGACGCGAAGGCTCTGATACCGTATTCATACTGAATGGCGGATCACCTGTTTCTGCTGCGGATG
TATCAGCGCTGCGCGAAGCGTCCTTGCAAAGCAGCACTTAA

Upstream 100 bases:

>100_bases
CACACAGCTAGAGTTGTTGCAAGCGGAGGAGACCGCCGAGTCCAACGACACAACCCTGAATGCGCAGACTGGCGTGGACA
TTCGACTTTAAGGATAAGAC

Downstream 100 bases:

>100_bases
AAGCGGTCCTGCAGCATCAGCTGGCCATAGACCGGGGGCAGTAGCATGCGACGAACACGCCCCAATGGGAATTTGGTCAG
CGGCTTGGTCATTACTTCGG

Product: flagellar basal body rod modification protein

Products: NA

Alternate protein names: Flagellar Basal Body Rod Protein; Basal-Body Rod Protein FlgD; FlgD Protein; Flagellar Basal-Body Rod Protein; Flagellar Hook Capping Protein FlgD; Flagellar Hook Assembly Protein; Flagellar Hook Initiation Protein FlgD

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MDILNAQATQPTRQLGTAQASNSAALSSDFETFLKMLTAQARFQDPLEPIDSSEYAAQLAQFSMVEQQVLSNDLLTELGA
QLGSNSIGQMAAWIGMEARTTAPVAFDGSPITVLPKSEAGADEAYLIAYGPDGSEVQRQQVTPGTDPIEWLGLDDNGAAL
PIGNYSFVVESRAVGQTIGTSPAETYSRITEARREGSDTVFILNGGSPVSAADVSALREASLQSST

Sequences:

>Translated_226_residues
MDILNAQATQPTRQLGTAQASNSAALSSDFETFLKMLTAQARFQDPLEPIDSSEYAAQLAQFSMVEQQVLSNDLLTELGA
QLGSNSIGQMAAWIGMEARTTAPVAFDGSPITVLPKSEAGADEAYLIAYGPDGSEVQRQQVTPGTDPIEWLGLDDNGAAL
PIGNYSFVVESRAVGQTIGTSPAETYSRITEARREGSDTVFILNGGSPVSAADVSALREASLQSST
>Mature_226_residues
MDILNAQATQPTRQLGTAQASNSAALSSDFETFLKMLTAQARFQDPLEPIDSSEYAAQLAQFSMVEQQVLSNDLLTELGA
QLGSNSIGQMAAWIGMEARTTAPVAFDGSPITVLPKSEAGADEAYLIAYGPDGSEVQRQQVTPGTDPIEWLGLDDNGAAL
PIGNYSFVVESRAVGQTIGTSPAETYSRITEARREGSDTVFILNGGSPVSAADVSALREASLQSST

Specific function: Unknown

COG id: COG1843

COG function: function code N; Flagellar hook capping protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23795; Mature: 23795

Theoretical pI: Translated: 3.84; Mature: 3.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDILNAQATQPTRQLGTAQASNSAALSSDFETFLKMLTAQARFQDPLEPIDSSEYAAQLA
CCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
QFSMVEQQVLSNDLLTELGAQLGSNSIGQMAAWIGMEARTTAPVAFDGSPITVLPKSEAG
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCEEECCCCEEEEECCCCC
ADEAYLIAYGPDGSEVQRQQVTPGTDPIEWLGLDDNGAALPIGNYSFVVESRAVGQTIGT
CCCEEEEEECCCCHHHHHHHCCCCCCCEEEEEECCCCCEEECCCEEEEEECHHHHHHCCC
SPAETYSRITEARREGSDTVFILNGGSPVSAADVSALREASLQSST
CHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDILNAQATQPTRQLGTAQASNSAALSSDFETFLKMLTAQARFQDPLEPIDSSEYAAQLA
CCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
QFSMVEQQVLSNDLLTELGAQLGSNSIGQMAAWIGMEARTTAPVAFDGSPITVLPKSEAG
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCEEECCCCEEEEECCCCC
ADEAYLIAYGPDGSEVQRQQVTPGTDPIEWLGLDDNGAALPIGNYSFVVESRAVGQTIGT
CCCEEEEEECCCCHHHHHHHCCCCCCCEEEEEECCCCCEEECCCEEEEEECHHHHHHCCC
SPAETYSRITEARREGSDTVFILNGGSPVSAADVSALREASLQSST
CHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA