Click here to switch to the map view.

The map label for this gene is ppsR [H]

Identifier: 110677556

GI number: 110677556

Start: 142968

End: 144395

Strand: Direct

Name: ppsR [H]

Synonym: RD1_0143

Alternate gene names: 110677556

Gene position: 142968-144395 (Clockwise)

Preceding gene: 110677555

Following gene: 110677557

Centisome position: 3.46

GC content: 58.33

Gene sequence:

>1428_bases
ATGACAACCGGCGGAAATACCTTCTGGTCCAGTGGGGCAGTACCGCTGATCGAACCCGAGTTTCTGAGCAGTATTATCGC
CGCTGCGTCGGACATTGCGCTGGTGGTATCTGCTGAAGGCATAATTCTTTCTGTTGTCGTGAATTCTCACAGCGAGTCTT
TTGGCAACCTCAAGCATTGGGAAGATCGCCCCGTTTCGGAGTTCCTGACGCGGGAATCCATCCCGAAGTTTGAAAAGGCC
CATGCGGCCTATCTCTTGGGCGAGGTTCCCAAAAAGCAGCTTGAGCTCAATCATAGTGACAACGCGGTGTGGCAATACCC
CGTGCGCTATACGTTTCATCGGTTCGGGCATGAAAACGCGGCACTGCTGTTGGGGCGCGACTTGCGGCCCATTGCCGAAA
CACAACAACAGTTGGTCCAGGCGCAGATCGCGCTGGAACAGGGCTATGAAGCACGGCGTGAATTTGACGCGCGCTACCGT
GTTTTGCTGGCCAACACCAAACAGGCCGTGGTTTTTGTCTCGGTCCAGAGCGGGCGCGTTGAGGATGCAAACGAAGCCGC
TGCGGCCCTCTTGGGCCTGAATGCGGATGCGCTGCGCTCCAGCAGCTTTGCGCAGCATTTCATGGATCGCTCGAATGTCG
AACTGACCGAAAGCCTGATGAATGCAACGCTGGCCGAAGAAGAAGGCCAGGTGACATTGACCGCCACGCGTACGCAAGCC
ACCGTGATCGCGCATCCGGTTGTGTTCCGCGCCGGTGGGCAGCGCGTATTGATGTGCCGCCTGGAAACAAAGGAAAGCAA
GGCCGCGACCCCGGATGCAGCGGCGGACCACGCGCTGGCCATGTTCCGCGCTGGCAGTGACGCCATGCTGTTCATGGGAC
CCAATGGTGTGATCATCTCGGTAAACGAAAGTTTTCTGGATCTCGTCGGCGCGGCGCATCTGTCTGATGTGGTTGGGCGT
AGTTTCGGGGATTTCCTCGGGCGCGGGCAGATTGATCTGGCAGTTCTGACAGAGCAGCCGCAGCGGTCGGGTCATATGCG
CATCTATGCCACCAAACTGGTGAATGATCTGGGCACGCGTCTGGCGGTCGAAATCTCCGCCACGCATCTGGCGGATGCGG
ATGTTGCAGCCATTGGCTGCATGATCCGCGATGTCAGCCGGACGGAAACCGCACGCGGGGGCAGTGGCGGGACGATATCA
AACGCCGCTCCGGCGGAGCCTGCGCGCAATGTCATGGATCTTGTCGGCTCGGCTGCCCTCAAGGATATCGTGGCGGAAAC
AACGGATGTTGTCGAAAAGATGTGCATCGAAACGGCGGTCGAGTTGACCAACAACAACCGCGTTGCCGCCGCCGAAATGC
TGGGCCTGTCGCGCCAGAGCCTCTATGTGAAATTGCGCAAGTACGGACTCCTCAACAAAAACGGTTAG

Upstream 100 bases:

>100_bases
AACAGCGCGTGATGGAAATAACAGGTGCTGATATCGTGACCAGTGTTGCAGAAGAAGCTGTGGCGCACTGCCTGAAATAC
GTCAATTCACCAAGCACTTC

Downstream 100 bases:

>100_bases
TGTGACGCAGTCCTGGCCCTTGCACCGACTCAAAGTGTAAGGCATAGTTTACACATGGCTGTAACTGATAGCATACATAC
CCGTCGATTCCCCGAGCCCG

Product: transcriptional regulator PpsR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 475; Mature: 474

Protein sequence:

>475_residues
MTTGGNTFWSSGAVPLIEPEFLSSIIAAASDIALVVSAEGIILSVVVNSHSESFGNLKHWEDRPVSEFLTRESIPKFEKA
HAAYLLGEVPKKQLELNHSDNAVWQYPVRYTFHRFGHENAALLLGRDLRPIAETQQQLVQAQIALEQGYEARREFDARYR
VLLANTKQAVVFVSVQSGRVEDANEAAAALLGLNADALRSSSFAQHFMDRSNVELTESLMNATLAEEEGQVTLTATRTQA
TVIAHPVVFRAGGQRVLMCRLETKESKAATPDAAADHALAMFRAGSDAMLFMGPNGVIISVNESFLDLVGAAHLSDVVGR
SFGDFLGRGQIDLAVLTEQPQRSGHMRIYATKLVNDLGTRLAVEISATHLADADVAAIGCMIRDVSRTETARGGSGGTIS
NAAPAEPARNVMDLVGSAALKDIVAETTDVVEKMCIETAVELTNNNRVAAAEMLGLSRQSLYVKLRKYGLLNKNG

Sequences:

>Translated_475_residues
MTTGGNTFWSSGAVPLIEPEFLSSIIAAASDIALVVSAEGIILSVVVNSHSESFGNLKHWEDRPVSEFLTRESIPKFEKA
HAAYLLGEVPKKQLELNHSDNAVWQYPVRYTFHRFGHENAALLLGRDLRPIAETQQQLVQAQIALEQGYEARREFDARYR
VLLANTKQAVVFVSVQSGRVEDANEAAAALLGLNADALRSSSFAQHFMDRSNVELTESLMNATLAEEEGQVTLTATRTQA
TVIAHPVVFRAGGQRVLMCRLETKESKAATPDAAADHALAMFRAGSDAMLFMGPNGVIISVNESFLDLVGAAHLSDVVGR
SFGDFLGRGQIDLAVLTEQPQRSGHMRIYATKLVNDLGTRLAVEISATHLADADVAAIGCMIRDVSRTETARGGSGGTIS
NAAPAEPARNVMDLVGSAALKDIVAETTDVVEKMCIETAVELTNNNRVAAAEMLGLSRQSLYVKLRKYGLLNKNG
>Mature_474_residues
TTGGNTFWSSGAVPLIEPEFLSSIIAAASDIALVVSAEGIILSVVVNSHSESFGNLKHWEDRPVSEFLTRESIPKFEKAH
AAYLLGEVPKKQLELNHSDNAVWQYPVRYTFHRFGHENAALLLGRDLRPIAETQQQLVQAQIALEQGYEARREFDARYRV
LLANTKQAVVFVSVQSGRVEDANEAAAALLGLNADALRSSSFAQHFMDRSNVELTESLMNATLAEEEGQVTLTATRTQAT
VIAHPVVFRAGGQRVLMCRLETKESKAATPDAAADHALAMFRAGSDAMLFMGPNGVIISVNESFLDLVGAAHLSDVVGRS
FGDFLGRGQIDLAVLTEQPQRSGHMRIYATKLVNDLGTRLAVEISATHLADADVAAIGCMIRDVSRTETARGGSGGTISN
AAPAEPARNVMDLVGSAALKDIVAETTDVVEKMCIETAVELTNNNRVAAAEMLGLSRQSLYVKLRKYGLLNKNG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR000014
- InterPro:   IPR011785 [H]

Pfam domain/function: PF02954 HTH_8 [H]

EC number: NA

Molecular weight: Translated: 51276; Mature: 51145

Theoretical pI: Translated: 5.62; Mature: 5.62

Prosite motif: PS50112 PAS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTGGNTFWSSGAVPLIEPEFLSSIIAAASDIALVVSAEGIILSVVVNSHSESFGNLKHW
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCEEEEEEECCCCCCCCCCCCC
EDRPVSEFLTRESIPKFEKAHAAYLLGEVPKKQLELNHSDNAVWQYPVRYTFHRFGHENA
CCCCHHHHHHHHCCCCHHHHHHHHHHHHCCHHHEECCCCCCCEEEECHHHHHHHHCCCCC
ALLLGRDLRPIAETQQQLVQAQIALEQGYEARREFDARYRVLLANTKQAVVFVSVQSGRV
EEEECCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHCCEEEEEEECCCEEEEEEEECCCCC
EDANEAAAALLGLNADALRSSSFAQHFMDRSNVELTESLMNATLAEEEGQVTLTATRTQA
CCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEEEECCEE
TVIAHPVVFRAGGQRVLMCRLETKESKAATPDAAADHALAMFRAGSDAMLFMGPNGVIIS
EEEECCEEEECCCCEEEEEEEECCCCCCCCCCCHHHHHHHHEECCCCEEEEECCCCEEEE
VNESFLDLVGAAHLSDVVGRSFGDFLGRGQIDLAVLTEQPQRSGHMRIYATKLVNDLGTR
ECHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEEEHHHHHHHHCCE
LAVEISATHLADADVAAIGCMIRDVSRTETARGGSGGTISNAAPAEPARNVMDLVGSAAL
EEEEEEHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
KDIVAETTDVVEKMCIETAVELTNNNRVAAAEMLGLSRQSLYVKLRKYGLLNKNG
HHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHCCCHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TTGGNTFWSSGAVPLIEPEFLSSIIAAASDIALVVSAEGIILSVVVNSHSESFGNLKHW
CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCEEEEEEECCCCCCCCCCCCC
EDRPVSEFLTRESIPKFEKAHAAYLLGEVPKKQLELNHSDNAVWQYPVRYTFHRFGHENA
CCCCHHHHHHHHCCCCHHHHHHHHHHHHCCHHHEECCCCCCCEEEECHHHHHHHHCCCCC
ALLLGRDLRPIAETQQQLVQAQIALEQGYEARREFDARYRVLLANTKQAVVFVSVQSGRV
EEEECCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHCCEEEEEEECCCEEEEEEEECCCCC
EDANEAAAALLGLNADALRSSSFAQHFMDRSNVELTESLMNATLAEEEGQVTLTATRTQA
CCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEEEECCEE
TVIAHPVVFRAGGQRVLMCRLETKESKAATPDAAADHALAMFRAGSDAMLFMGPNGVIIS
EEEECCEEEECCCCEEEEEEEECCCCCCCCCCCHHHHHHHHEECCCCEEEEECCCCEEEE
VNESFLDLVGAAHLSDVVGRSFGDFLGRGQIDLAVLTEQPQRSGHMRIYATKLVNDLGTR
ECHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCEEEEHHHHHHHHCCE
LAVEISATHLADADVAAIGCMIRDVSRTETARGGSGGTISNAAPAEPARNVMDLVGSAAL
EEEEEEHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
KDIVAETTDVVEKMCIETAVELTNNNRVAAAEMLGLSRQSLYVKLRKYGLLNKNG
HHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHCCCHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA