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The map label for this gene is 108813739

Identifier: 108813739

GI number: 108813739

Start: 4088408

End: 4089151

Strand: Reverse

Name: 108813739

Synonym: YPN_3579

Alternate gene names: NA

Gene position: 4089151-4088408 (Counterclockwise)

Preceding gene: 108813742

Following gene: 108813738

Centisome position: 90.18

GC content: 49.06

Gene sequence:

>744_bases
GTGCACCGGGGTCATGGCCGGGAGTACACCTCGTTTGAGAGCTTCCACCATCAGATCGAACACTCGCAAGAAAAGACCGC
ACTTTATTACCGCCTACGTGTGAAAAATTCATTATTCCGTAAGGGATTCGAACACTACATTTCCTTTGTTCGCAGTGATG
AATCGAAGCTGGTGCTTGCTGAAGAGAATGTCTCGGTCAGCCTGACGTGCACCAACCGTGAGTTGCCGCTGTCGTTGCGC
GTTGGTGATATCAATCAACTCAGCACAGACAGCCCTTCATTCGCGACGTTCCGCAATATTACCCGTCCTTCCGTGCCGTT
GTATCCGGTGCTGGATGGGGGCCTGCATTGGTCATTGCTCTCCAATATGTCGTTGAACTACATGTCCTTACTGGATAAGG
ACGCGTTGAAGCAAATTCTGCATACCTATGATTTCCCAAGCCTGCATAACCGGCAATCAGCCAGGGCATCGCAAAAGAAA
CTGGACGCTATCCAACGTATTGAAACACAACCGATTGACCGGTTGTTTCGTGGCTTACCTGTCAGAGGGCTACAAACCAC
GCTATGGCTGGAGCAAGGCGCTTTTAGCTCTGAAGGCGAGCTTTATCTCTTCAGCACGGTATTAGCTCGCTTCTTCTCAC
TGTATGCCAGCGTCAATGCGTTTCATCTTTTAAAAGTCATCAATCTTGATAATCAGGAATGTTACGAATGGCCGGTACAG
ACAGGTCAACATGCACTGATGTAA

Upstream 100 bases:

>100_bases
GAAAGGTAATGTTGAACCGCCGCTAGGCGGGTTGAAAAAGGGTGTTTCATTGAACCGAACCTCCAGATCATGGATAAAAA
GATCCAAGATCTGGGGTTCA

Downstream 100 bases:

>100_bases
GTGTGGTTGAGGATGTAAGTGGGGTTGAGAATGTAAATGGGGTTGAGGCAAGACCCGAAGGGCAGGCATTGGATGTTTCA
CGTTATAACTTTTTTCAATT

Product: hypothetical protein

Products: NA

Alternate protein names: Type VI Secretion Protein Family; Protein ImpG; LOW QUALITY PROTEIN Type VI Secretion Protein; Conserved Protein; Type VI Secretion System Protein; Type VI Secretion Protein VasA; Type VI Secretion System

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MHRGHGREYTSFESFHHQIEHSQEKTALYYRLRVKNSLFRKGFEHYISFVRSDESKLVLAEENVSVSLTCTNRELPLSLR
VGDINQLSTDSPSFATFRNITRPSVPLYPVLDGGLHWSLLSNMSLNYMSLLDKDALKQILHTYDFPSLHNRQSARASQKK
LDAIQRIETQPIDRLFRGLPVRGLQTTLWLEQGAFSSEGELYLFSTVLARFFSLYASVNAFHLLKVINLDNQECYEWPVQ
TGQHALM

Sequences:

>Translated_247_residues
MHRGHGREYTSFESFHHQIEHSQEKTALYYRLRVKNSLFRKGFEHYISFVRSDESKLVLAEENVSVSLTCTNRELPLSLR
VGDINQLSTDSPSFATFRNITRPSVPLYPVLDGGLHWSLLSNMSLNYMSLLDKDALKQILHTYDFPSLHNRQSARASQKK
LDAIQRIETQPIDRLFRGLPVRGLQTTLWLEQGAFSSEGELYLFSTVLARFFSLYASVNAFHLLKVINLDNQECYEWPVQ
TGQHALM
>Mature_247_residues
MHRGHGREYTSFESFHHQIEHSQEKTALYYRLRVKNSLFRKGFEHYISFVRSDESKLVLAEENVSVSLTCTNRELPLSLR
VGDINQLSTDSPSFATFRNITRPSVPLYPVLDGGLHWSLLSNMSLNYMSLLDKDALKQILHTYDFPSLHNRQSARASQKK
LDAIQRIETQPIDRLFRGLPVRGLQTTLWLEQGAFSSEGELYLFSTVLARFFSLYASVNAFHLLKVINLDNQECYEWPVQ
TGQHALM

Specific function: Unknown

COG id: COG3519

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28527; Mature: 28527

Theoretical pI: Translated: 8.25; Mature: 8.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHRGHGREYTSFESFHHQIEHSQEKTALYYRLRVKNSLFRKGFEHYISFVRSDESKLVLA
CCCCCCCCCHHHHHHHHHHHCCCHHHEEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
EENVSVSLTCTNRELPLSLRVGDINQLSTDSPSFATFRNITRPSVPLYPVLDGGLHWSLL
ECCCEEEEEECCCCCCEEEEECCCCCCCCCCCCHHHHHHCCCCCCCEEEEECCCCHHHHH
SNMSLNYMSLLDKDALKQILHTYDFPSLHNRQSARASQKKLDAIQRIETQPIDRLFRGLP
HCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHCCCC
VRGLQTTLWLEQGAFSSEGELYLFSTVLARFFSLYASVNAFHLLKVINLDNQECYEWPVQ
CCCCHHEEEEECCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCHH
TGQHALM
CCCCCCC
>Mature Secondary Structure
MHRGHGREYTSFESFHHQIEHSQEKTALYYRLRVKNSLFRKGFEHYISFVRSDESKLVLA
CCCCCCCCCHHHHHHHHHHHCCCHHHEEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
EENVSVSLTCTNRELPLSLRVGDINQLSTDSPSFATFRNITRPSVPLYPVLDGGLHWSLL
ECCCEEEEEECCCCCCEEEEECCCCCCCCCCCCHHHHHHCCCCCCCEEEEECCCCHHHHH
SNMSLNYMSLLDKDALKQILHTYDFPSLHNRQSARASQKKLDAIQRIETQPIDRLFRGLP
HCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHCCCC
VRGLQTTLWLEQGAFSSEGELYLFSTVLARFFSLYASVNAFHLLKVINLDNQECYEWPVQ
CCCCHHEEEEECCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCHH
TGQHALM
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA