Click here to switch to the map view.

The map label for this gene is osmF [H]

Identifier: 108812941

GI number: 108812941

Start: 3137753

End: 3138220

Strand: Reverse

Name: osmF [H]

Synonym: YPN_2781

Alternate gene names: 108812941

Gene position: 3138220-3137753 (Counterclockwise)

Preceding gene: 108812943

Following gene: 108812940

Centisome position: 69.21

GC content: 47.01

Gene sequence:

>468_bases
ATGGCACTGTTCCTAACTCGTAGCCGGATTTTTGCAGTGGCTGCTATCATGCTGTCTGCATCGAGTGGTATATCGCACGC
GGCAGATAACGTCCGTGTAGGCTCTAAAATTGATACCGAAGGCTCCTTGCTGGGCAATATTATTGTGCAGGTTTTGGAGG
CTAACGGGATTAAAACCACCAATAAATCCCAACTGGGAGCAACCAAAGTCGTACGTGGGGCGATTACTGCCGGTGAGATT
GATATTTATCCTGAATATACGGGGAATGGGGCTTTCTTCTTTTCTGATGAACAAGATCCTGCCTGGAAGAGCGCCAAAGC
GGGCTATGAGAAAGTAAAAGCACTGGATTACGAAAAAAATAAATTGGTATGGCTCTCTCCCGCGCCAGCGAACAATACCT
GGACCATTGCTGTACGAAAAGACTTAGCCACGGCCAATAATTTGCGAACGCTGGATGATTTAGGTTAG

Upstream 100 bases:

>100_bases
TGGTTTGAATCGCATTTATGCTAGCCCGTAGAACCACCAACGTTCAGGCAACATGAAGAAACTTGAAGTATAACGGGGAT
AAACTGATAAGAGGTGACGT

Downstream 100 bases:

>100_bases
TGGATCAATGGCGGAGGTCAGTTTAAATTAGCCGCCTCAGCCGAGTTTATCGAGCGGCCTGATGCGTTACCCGCTTTCCA
ACAGGCGTATGGTTTTACGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 154

Protein sequence:

>155_residues
MALFLTRSRIFAVAAIMLSASSGISHAADNVRVGSKIDTEGSLLGNIIVQVLEANGIKTTNKSQLGATKVVRGAITAGEI
DIYPEYTGNGAFFFSDEQDPAWKSAKAGYEKVKALDYEKNKLVWLSPAPANNTWTIAVRKDLATANNLRTLDDLG

Sequences:

>Translated_155_residues
MALFLTRSRIFAVAAIMLSASSGISHAADNVRVGSKIDTEGSLLGNIIVQVLEANGIKTTNKSQLGATKVVRGAITAGEI
DIYPEYTGNGAFFFSDEQDPAWKSAKAGYEKVKALDYEKNKLVWLSPAPANNTWTIAVRKDLATANNLRTLDDLG
>Mature_154_residues
ALFLTRSRIFAVAAIMLSASSGISHAADNVRVGSKIDTEGSLLGNIIVQVLEANGIKTTNKSQLGATKVVRGAITAGEID
IYPEYTGNGAFFFSDEQDPAWKSAKAGYEKVKALDYEKNKLVWLSPAPANNTWTIAVRKDLATANNLRTLDDLG

Specific function: May be part of an ABC transporter complex involved in uptake of osmoprotectant molecules [H]

COG id: COG1732

COG function: function code M; Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein)

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788452, Length=146, Percent_Identity=67.8082191780822, Blast_Score=208, Evalue=1e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007210 [H]

Pfam domain/function: PF04069 OpuAC [H]

EC number: NA

Molecular weight: Translated: 16633; Mature: 16502

Theoretical pI: Translated: 8.87; Mature: 8.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALFLTRSRIFAVAAIMLSASSGISHAADNVRVGSKIDTEGSLLGNIIVQVLEANGIKTT
CEEEEEHHHHHHHHHHHHHCCCCCCCCCCCEEECCEECCCHHHHHHHHHHHHHCCCCCCC
NKSQLGATKVVRGAITAGEIDIYPEYTGNGAFFFSDEQDPAWKSAKAGYEKVKALDYEKN
CCCCCCHHHHHHHCEEECEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCC
KLVWLSPAPANNTWTIAVRKDLATANNLRTLDDLG
EEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ALFLTRSRIFAVAAIMLSASSGISHAADNVRVGSKIDTEGSLLGNIIVQVLEANGIKTT
EEEEEHHHHHHHHHHHHHCCCCCCCCCCCEEECCEECCCHHHHHHHHHHHHHCCCCCCC
NKSQLGATKVVRGAITAGEIDIYPEYTGNGAFFFSDEQDPAWKSAKAGYEKVKALDYEKN
CCCCCCHHHHHHHCEEECEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCC
KLVWLSPAPANNTWTIAVRKDLATANNLRTLDDLG
EEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]