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The map label for this gene is osmF [H]

Identifier: 108812940

GI number: 108812940

Start: 3137288

End: 3137608

Strand: Reverse

Name: osmF [H]

Synonym: YPN_2780

Alternate gene names: 108812940

Gene position: 3137608-3137288 (Counterclockwise)

Preceding gene: 108812941

Following gene: 108812939

Centisome position: 69.19

GC content: 48.29

Gene sequence:

>321_bases
GTGACGATTAAAGCGGCAGCAGAACAGATCTCAGGAGTGAATGCCGCCATGGCTTATGGTACCGATGGTCCTGTAGCGGC
ACTGGGTTTACAGACTCTGGAAGATACTAAAGGCGTGCAGCCGATTTATGCGCCAGCTCCAATCATCCGTGAAGTTACTC
TGAAAGCTCACCCGAACATCCCGGCTTTGCTTAATCCGGTATTCGCCACACTGGATGGCCCAACGTTACAAAAGCTGAAT
GCACGTATTGCGGTGGAAGGGCAGGATGCAAAGAAAGTGGCTGCCAATTATCTAAAAGATAACGGATTTATTAAAAACTA
A

Upstream 100 bases:

>100_bases
GTTTATCGAGCGGCCTGATGCGTTACCCGCTTTCCAACAGGCGTATGGTTTTACGCTGAATCAAGATCAACTACTGTCCC
TGGCTGGGGGAGATACCGCT

Downstream 100 bases:

>100_bases
CCATTAGCTGGGGGAGCCAGCCGACCAGTGTGGCACTATAAGCTTATTCGTTTTATGGTGCTATTCGTTTCATGGCGCCA
TCCGTTTTATGGTGCCATCA

Product: ABC type periplasmic choline/glycine/betaine binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 106; Mature: 105

Protein sequence:

>106_residues
MTIKAAAEQISGVNAAMAYGTDGPVAALGLQTLEDTKGVQPIYAPAPIIREVTLKAHPNIPALLNPVFATLDGPTLQKLN
ARIAVEGQDAKKVAANYLKDNGFIKN

Sequences:

>Translated_106_residues
MTIKAAAEQISGVNAAMAYGTDGPVAALGLQTLEDTKGVQPIYAPAPIIREVTLKAHPNIPALLNPVFATLDGPTLQKLN
ARIAVEGQDAKKVAANYLKDNGFIKN
>Mature_105_residues
TIKAAAEQISGVNAAMAYGTDGPVAALGLQTLEDTKGVQPIYAPAPIIREVTLKAHPNIPALLNPVFATLDGPTLQKLNA
RIAVEGQDAKKVAANYLKDNGFIKN

Specific function: May be part of an ABC transporter complex involved in uptake of osmoprotectant molecules [H]

COG id: COG1732

COG function: function code M; Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein)

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788452, Length=105, Percent_Identity=71.4285714285714, Blast_Score=154, Evalue=1e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007210 [H]

Pfam domain/function: PF04069 OpuAC [H]

EC number: NA

Molecular weight: Translated: 11109; Mature: 10978

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIKAAAEQISGVNAAMAYGTDGPVAALGLQTLEDTKGVQPIYAPAPIIREVTLKAHPNI
CCCHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHEEECCCCCC
PALLNPVFATLDGPTLQKLNARIAVEGQDAKKVAANYLKDNGFIKN
CHHHHHHHHHCCCCCHHHCCCEEEECCCCHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TIKAAAEQISGVNAAMAYGTDGPVAALGLQTLEDTKGVQPIYAPAPIIREVTLKAHPNI
CCHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHEEECCCCCC
PALLNPVFATLDGPTLQKLNARIAVEGQDAKKVAANYLKDNGFIKN
CHHHHHHHHHCCCCCHHHCCCEEEECCCCHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]