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The map label for this gene is ymbA [H]

Identifier: 108812716

GI number: 108812716

Start: 2865531

End: 2866109

Strand: Reverse

Name: ymbA [H]

Synonym: YPN_2555

Alternate gene names: 108812716

Gene position: 2866109-2865531 (Counterclockwise)

Preceding gene: 108812717

Following gene: 108812715

Centisome position: 63.21

GC content: 49.57

Gene sequence:

>579_bases
ATGATGAAATGGATGGCAGTTATCGTCGCGCTGTTACTCAGTGCTTGCAGCAGCGAAACCAGCAAGACGTACTATCAGTT
ACCGGCACTTAATCAGTTACCGGCACTCAATGCGCCTGCTACAGTCAGTAGCAGCGTAGCATCACGGCAGTTGTGGGTGG
AACATGTCAGTGTGGCCGATTACCTTGCGGCGGTTGGTGTGGTGTATCAAACCAACGATGTGCAGTATGTTATTGCTAAC
AATAATCTCTGGGCTAGCCCACTAGACCAGCAGTTACAGCAAACGTTGGTGACCAACCTGAGTTATTCGCTACCGGGGTG
GCTCGTCTCTGCGCAGCCGTTGGATAGCGATCAGGATGTTCTCAATGTTACGGTAACCGGGTTCCATGGACGTTATGATG
GGCGTGCAGTAATACGGGGTGTCTGGATCCTAAAACATCAGGGGCAGTTGATTAAGCAGCCTTTCAATCTGGAGCTTAAA
CAGAGTGAAGATGGCTATGATGCACTGGTCCGTACATTGGCAGAAGGCTGGCAACAGGAAGCTAAAACTATCGCCGCTCA
ATTGCAAAAGATTAAGTAA

Upstream 100 bases:

>100_bases
GTGAATTACAACCGGTATTGCGAACACTGAATGAGAAGAGCAATGCGCTAGTATTTGAAGCAGCAGGAAGTCAGGATCCT
CAGCCTAAGAAGGCCAAAAA

Downstream 100 bases:

>100_bases
GATCTTTTTCTAAATCAGTCTAATCCTCTTTCTCTGGTAATAATCATCTTGTCAGGGGAAGGGGGTTTCTATTTAATATC
AATGCATTACCTTCATATGC

Product: lipoprotein protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MMKWMAVIVALLLSACSSETSKTYYQLPALNQLPALNAPATVSSSVASRQLWVEHVSVADYLAAVGVVYQTNDVQYVIAN
NNLWASPLDQQLQQTLVTNLSYSLPGWLVSAQPLDSDQDVLNVTVTGFHGRYDGRAVIRGVWILKHQGQLIKQPFNLELK
QSEDGYDALVRTLAEGWQQEAKTIAAQLQKIK

Sequences:

>Translated_192_residues
MMKWMAVIVALLLSACSSETSKTYYQLPALNQLPALNAPATVSSSVASRQLWVEHVSVADYLAAVGVVYQTNDVQYVIAN
NNLWASPLDQQLQQTLVTNLSYSLPGWLVSAQPLDSDQDVLNVTVTGFHGRYDGRAVIRGVWILKHQGQLIKQPFNLELK
QSEDGYDALVRTLAEGWQQEAKTIAAQLQKIK
>Mature_192_residues
MMKWMAVIVALLLSACSSETSKTYYQLPALNQLPALNAPATVSSSVASRQLWVEHVSVADYLAAVGVVYQTNDVQYVIAN
NNLWASPLDQQLQQTLVTNLSYSLPGWLVSAQPLDSDQDVLNVTVTGFHGRYDGRAVIRGVWILKHQGQLIKQPFNLELK
QSEDGYDALVRTLAEGWQQEAKTIAAQLQKIK

Specific function: Unknown

COG id: COG3009

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI145693109, Length=192, Percent_Identity=57.8125, Blast_Score=226, Evalue=1e-60,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005586 [H]

Pfam domain/function: PF03886 DUF330 [H]

EC number: NA

Molecular weight: Translated: 21257; Mature: 21257

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKWMAVIVALLLSACSSETSKTYYQLPALNQLPALNAPATVSSSVASRQLWVEHVSVAD
CHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
YLAAVGVVYQTNDVQYVIANNNLWASPLDQQLQQTLVTNLSYSLPGWLVSAQPLDSDQDV
HHHHHHHEEECCCEEEEEECCCEECCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCE
LNVTVTGFHGRYDGRAVIRGVWILKHQGQLIKQPFNLELKQSEDGYDALVRTLAEGWQQE
EEEEEEEECCCCCCCEEEHEEEEEECCCHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHH
AKTIAAQLQKIK
HHHHHHHHHHCC
>Mature Secondary Structure
MMKWMAVIVALLLSACSSETSKTYYQLPALNQLPALNAPATVSSSVASRQLWVEHVSVAD
CHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
YLAAVGVVYQTNDVQYVIANNNLWASPLDQQLQQTLVTNLSYSLPGWLVSAQPLDSDQDV
HHHHHHHEEECCCEEEEEECCCEECCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCE
LNVTVTGFHGRYDGRAVIRGVWILKHQGQLIKQPFNLELKQSEDGYDALVRTLAEGWQQE
EEEEEEEECCCCCCCEEEHEEEEEECCCHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHH
AKTIAAQLQKIK
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]