| Definition | Yersinia pestis Nepal516, complete genome. |
|---|---|
| Accession | NC_008149 |
| Length | 4,534,590 |
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The map label for this gene is 108812567
Identifier: 108812567
GI number: 108812567
Start: 2688336
End: 2689031
Strand: Reverse
Name: 108812567
Synonym: YPN_2406
Alternate gene names: NA
Gene position: 2689031-2688336 (Counterclockwise)
Preceding gene: 108812570
Following gene: 108812566
Centisome position: 59.3
GC content: 35.2
Gene sequence:
>696_bases ATGAAAAAGAAAACACGATCAAACATTTTTAAATTATCACTTCTTTCAATTCCTCCTTTGATTGTTTTATCTTTTATTTT GTATATTTTCATGCTGTTAGCTTTCCCCGATACGCTTAGAAAAATTGAAGGTTGGTATAAAGATACCTTCTTGACAAAAT ATATTACTCTGACACAAGATGAAGCTGCCAAGCAGTTAAATAATTATGCGATTGTTACTATTGATACCTCTTTATCAGAG AATATAAAAAAATCAAATAATATTAAATTCGTGGAACTATGGTATATGAATCATAAAGGTGGTGACTCGATAAATTCCTT TCGGTATATCGAAATGGTCATAAAGCCTATCAGTAATCCTAACGAGAATACTCAAGTTTACCTCCCTGACATGGGTGAAT ATAACCTTCATAGAGCCACCATTAAATTTGAGGGTAATTCCCCCGATGATTATGGTCACAGCGTGACGATCAATTTTGAT AGACATGAGGCCGGTCGTAGTTATAACCAATTTGTTGATAGGTACTTAAAGGAAGGGTCGCTCGTAAAAAGCGGTGAAAC TATCGTGGCATGTGAAAAAAATGACGTTGACTTGTGTGATGCGAATATCCGCTTAACAGTTACATTTGACGAAAAATACA GTGATAGTAACTTCTTTGGTAATCCAAGGCCGTTGTCGTCAAGTGGTAAGGCCTAA
Upstream 100 bases:
>100_bases TGCGCTGATAAATGACCTTTCTATCTGTGCTGGTAATATTTATGGCTTCAGCGTAAACTGGCTCGCTTACTCTTAGACTA GACGTTCAGAATTAAAATTT
Downstream 100 bases:
>100_bases ATTCAGAGGGAGACTACACGGTAACCTGATACAGCCTAAAAAATTACAGGTATAATCCCACCAATTATCCAACTGGTTTA GAAACGAAGATGACAAAACT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 231; Mature: 231
Protein sequence:
>231_residues MKKKTRSNIFKLSLLSIPPLIVLSFILYIFMLLAFPDTLRKIEGWYKDTFLTKYITLTQDEAAKQLNNYAIVTIDTSLSE NIKKSNNIKFVELWYMNHKGGDSINSFRYIEMVIKPISNPNENTQVYLPDMGEYNLHRATIKFEGNSPDDYGHSVTINFD RHEAGRSYNQFVDRYLKEGSLVKSGETIVACEKNDVDLCDANIRLTVTFDEKYSDSNFFGNPRPLSSSGKA
Sequences:
>Translated_231_residues MKKKTRSNIFKLSLLSIPPLIVLSFILYIFMLLAFPDTLRKIEGWYKDTFLTKYITLTQDEAAKQLNNYAIVTIDTSLSE NIKKSNNIKFVELWYMNHKGGDSINSFRYIEMVIKPISNPNENTQVYLPDMGEYNLHRATIKFEGNSPDDYGHSVTINFD RHEAGRSYNQFVDRYLKEGSLVKSGETIVACEKNDVDLCDANIRLTVTFDEKYSDSNFFGNPRPLSSSGKA >Mature_231_residues MKKKTRSNIFKLSLLSIPPLIVLSFILYIFMLLAFPDTLRKIEGWYKDTFLTKYITLTQDEAAKQLNNYAIVTIDTSLSE NIKKSNNIKFVELWYMNHKGGDSINSFRYIEMVIKPISNPNENTQVYLPDMGEYNLHRATIKFEGNSPDDYGHSVTINFD RHEAGRSYNQFVDRYLKEGSLVKSGETIVACEKNDVDLCDANIRLTVTFDEKYSDSNFFGNPRPLSSSGKA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26514; Mature: 26514
Theoretical pI: Translated: 7.56; Mature: 7.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKKTRSNIFKLSLLSIPPLIVLSFILYIFMLLAFPDTLRKIEGWYKDTFLTKYITLTQD CCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHEEEEEEEECCH EAAKQLNNYAIVTIDTSLSENIKKSNNIKFVELWYMNHKGGDSINSFRYIEMVIKPISNP HHHHHHCCEEEEEEECCHHHHHHHCCCEEEEEEEEEECCCCCCCHHHHHEEHHHHHCCCC NENTQVYLPDMGEYNLHRATIKFEGNSPDDYGHSVTINFDRHEAGRSYNQFVDRYLKEGS CCCCEEEECCCCCCCEEEEEEEECCCCCCCCCCEEEEEECCCHHCCCHHHHHHHHHHCCC LVKSGETIVACEKNDVDLCDANIRLTVTFDEKYSDSNFFGNPRPLSSSGKA EEECCCEEEEECCCCCEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MKKKTRSNIFKLSLLSIPPLIVLSFILYIFMLLAFPDTLRKIEGWYKDTFLTKYITLTQD CCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHEEEEEEEECCH EAAKQLNNYAIVTIDTSLSENIKKSNNIKFVELWYMNHKGGDSINSFRYIEMVIKPISNP HHHHHHCCEEEEEEECCHHHHHHHCCCEEEEEEEEEECCCCCCCHHHHHEEHHHHHCCCC NENTQVYLPDMGEYNLHRATIKFEGNSPDDYGHSVTINFDRHEAGRSYNQFVDRYLKEGS CCCCEEEECCCCCCCEEEEEEEECCCCCCCCCCEEEEEECCCHHCCCHHHHHHHHHHCCC LVKSGETIVACEKNDVDLCDANIRLTVTFDEKYSDSNFFGNPRPLSSSGKA EEECCCEEEEECCCCCEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA