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The map label for this gene is flhC [H]

Identifier: 108812129

GI number: 108812129

Start: 2225413

End: 2225994

Strand: Reverse

Name: flhC [H]

Synonym: YPN_1967

Alternate gene names: 108812129

Gene position: 2225994-2225413 (Counterclockwise)

Preceding gene: 108812130

Following gene: 108812128

Centisome position: 49.09

GC content: 48.11

Gene sequence:

>582_bases
ATGGTTGAGAAAAGTATTGTCCAGGAAGCTAAAGACATACATTTGGCAATGGAACTGATCACGTTGGGTGCTCGTCTACA
GATGCTTGAAAGTGAAACACAGCTTAGCCGAGGCCGTTTAATCAAGCTCTACAAAGAGCTTAGAGGCAGCCCTCCCCCTA
AAGGGATGTTGCCGTTTTCGACCGATTGGTTTATGACTTGGGAACAGAATATTCATTCGTCGATGTTTTATAACGCTTAC
AGTTTCTTGCTTAAAAGTGGCTATTGCACGGGTGTTGAAGCGGTGATTAGAGCGTATCGGCTTTACCTCGAACAGTGTCC
CGATCTGCCTGAAGTCCCGCCATTACTGGCGTTGACCCGAGCCTGGACGCTGGTCCGTTTCGTTGACAGTGGCATGTTGC
AGCTTTCCAGATGCAATTGCTGTGGGGGGACATTTATCACCCATGCCCATCAACCACTAAACAGTTTTGTCTGCAGTCTT
TGCCAGCCTCCTTCCCGCGCAGTAAAAAAACGTAAACTTTCTCCGCAGTCTGCCGATATAACTTCACAACTGCTGGATGA
GCAGGTTAGACGCGCAGTTTGA

Upstream 100 bases:

>100_bases
TGACCTGCAACAAATCCATACCGGAATTCTCTTGTCGAGTCACTTACTCCACGAGCTATCGTTAAAAGACGATAGTACGC
CTAAAAAAAGAGCATGATTG

Downstream 100 bases:

>100_bases
GTTTCATAAAATTGTCAGACATTCATGCCCAAAATTATTGGCGTTACAGATAGGTTGCTAACATCACTGTAACGTCAAGT
TAGCAGGGGGTAGGTTACAG

Product: transcriptional activator FlhC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MVEKSIVQEAKDIHLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFMTWEQNIHSSMFYNAY
SFLLKSGYCTGVEAVIRAYRLYLEQCPDLPEVPPLLALTRAWTLVRFVDSGMLQLSRCNCCGGTFITHAHQPLNSFVCSL
CQPPSRAVKKRKLSPQSADITSQLLDEQVRRAV

Sequences:

>Translated_193_residues
MVEKSIVQEAKDIHLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFMTWEQNIHSSMFYNAY
SFLLKSGYCTGVEAVIRAYRLYLEQCPDLPEVPPLLALTRAWTLVRFVDSGMLQLSRCNCCGGTFITHAHQPLNSFVCSL
CQPPSRAVKKRKLSPQSADITSQLLDEQVRRAV
>Mature_193_residues
MVEKSIVQEAKDIHLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFSTDWFMTWEQNIHSSMFYNAY
SFLLKSGYCTGVEAVIRAYRLYLEQCPDLPEVPPLLALTRAWTLVRFVDSGMLQLSRCNCCGGTFITHAHQPLNSFVCSL
CQPPSRAVKKRKLSPQSADITSQLLDEQVRRAV

Specific function: Transcriptional activator. Together with flhD it acts as a compound sigma factor that activates class 2 flagellar genes (Probable). Is required for flagellin production, swimming motility, and swarming motility [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flhC family [H]

Homologues:

Organism=Escherichia coli, GI1788201, Length=193, Percent_Identity=82.3834196891192, Blast_Score=328, Evalue=9e-92,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007944
- ProDom:   PD016592 [H]

Pfam domain/function: PF05280 FlhC [H]

EC number: NA

Molecular weight: Translated: 21897; Mature: 21897

Theoretical pI: Translated: 8.68; Mature: 8.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
7.3 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
7.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVEKSIVQEAKDIHLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
TDWFMTWEQNIHSSMFYNAYSFLLKSGYCTGVEAVIRAYRLYLEQCPDLPEVPPLLALTR
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
AWTLVRFVDSGMLQLSRCNCCGGTFITHAHQPLNSFVCSLCQPPSRAVKKRKLSPQSADI
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHCCCHHHHHHHHCCCCCHHHH
TSQLLDEQVRRAV
HHHHHHHHHHHCC
>Mature Secondary Structure
MVEKSIVQEAKDIHLAMELITLGARLQMLESETQLSRGRLIKLYKELRGSPPPKGMLPFS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
TDWFMTWEQNIHSSMFYNAYSFLLKSGYCTGVEAVIRAYRLYLEQCPDLPEVPPLLALTR
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
AWTLVRFVDSGMLQLSRCNCCGGTFITHAHQPLNSFVCSLCQPPSRAVKKRKLSPQSADI
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHHHCCCHHHHHHHHCCCCCHHHH
TSQLLDEQVRRAV
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10217774 [H]