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The map label for this gene is flhD [H]

Identifier: 108812130

GI number: 108812130

Start: 2226092

End: 2226349

Strand: Reverse

Name: flhD [H]

Synonym: YPN_1968

Alternate gene names: 108812130

Gene position: 2226349-2226092 (Counterclockwise)

Preceding gene: 108812131

Following gene: 108812129

Centisome position: 49.1

GC content: 37.21

Gene sequence:

>258_bases
ATGAGTACGTCTGAATTACTCAAACATATTTATGATATTAATTTGTCATATTTACTTTTAGCTCAACGGTTAATTAATGA
TGAAAAAGCGTCGGCGATGTTTCGCTTAGGTATTACGGATACCATGGCGGATGCATTATCACAGTTAACGTTACCGCAAA
TGGTTAAACTAGCTGAAACTAACCAATTAGTTTGTCACTTCCGTTTTAGTGACCACAACACGATCCATCATCTAACGAAT
AGAGTCTCGCGTGGATGA

Upstream 100 bases:

>100_bases
AGGTCTAATTAACAATATAACGGGAAGGATCCCTGGTTTTGAGTGATAAATTTTGTCATTCAATTTATGTTTTAAAACAT
AATCAGTTGGGATGTGTAAG

Downstream 100 bases:

>100_bases
CCTGCAACAAATCCATACCGGAATTCTCTTGTCGAGTCACTTACTCCACGAGCTATCGTTAAAAGACGATAGTACGCCTA
AAAAAAGAGCATGATTGATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 85; Mature: 84

Protein sequence:

>85_residues
MSTSELLKHIYDINLSYLLLAQRLINDEKASAMFRLGITDTMADALSQLTLPQMVKLAETNQLVCHFRFSDHNTIHHLTN
RVSRG

Sequences:

>Translated_85_residues
MSTSELLKHIYDINLSYLLLAQRLINDEKASAMFRLGITDTMADALSQLTLPQMVKLAETNQLVCHFRFSDHNTIHHLTN
RVSRG
>Mature_84_residues
STSELLKHIYDINLSYLLLAQRLINDEKASAMFRLGITDTMADALSQLTLPQMVKLAETNQLVCHFRFSDHNTIHHLTNR
VSRG

Specific function: Transcriptional activator. Involved in the regulation of a number of genetic systems. Together with FlhC it acts as an activator of class 2 flagellar genes. Also required for swimming motility, and swarming motility [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FlhD family [H]

Homologues:

Organism=Escherichia coli, GI145693151, Length=80, Percent_Identity=78.75, Blast_Score=126, Evalue=2e-31,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007911
- ProDom:   PD015582 [H]

Pfam domain/function: PF05247 FlhD [H]

EC number: NA

Molecular weight: Translated: 9713; Mature: 9582

Theoretical pI: Translated: 7.73; Mature: 7.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTSELLKHIYDINLSYLLLAQRLINDEKASAMFRLGITDTMADALSQLTLPQMVKLAET
CCHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHCC
NQLVCHFRFSDHNTIHHLTNRVSRG
CCEEEEEEECCCCHHHHHHHHHCCC
>Mature Secondary Structure 
STSELLKHIYDINLSYLLLAQRLINDEKASAMFRLGITDTMADALSQLTLPQMVKLAET
CHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHCC
NQLVCHFRFSDHNTIHHLTNRVSRG
CCEEEEEEECCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10217774 [H]