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The map label for this gene is ydgA [H]

Identifier: 108811896

GI number: 108811896

Start: 1952126

End: 1953631

Strand: Reverse

Name: ydgA [H]

Synonym: YPN_1734

Alternate gene names: 108811896

Gene position: 1953631-1952126 (Counterclockwise)

Preceding gene: 108811897

Following gene: 108811895

Centisome position: 43.08

GC content: 44.22

Gene sequence:

>1506_bases
ATGAAAAAATCGTTAGTGGCTGTCAGCGTCATTGTCGTACTCGGCGCAGCATGGACTGGAGCCTCTTGGTATACCGGTAA
ACTGATTGAACAACGCATGACCGAGCTGGTTGATAATGCCAACGGACAGATCAAGACAGCGTTTCCAAACGTGGGTGTCA
AATTTGCTTATAAAGATTACCAACGCGGTCTGTTCTCCAGTAAGGTCCGTTATATTTTACAATCAGATAATACTTTTACT
GGCGAAAAAGTATTGAGCGATGGTGATGAAATCGCCTTTATTGAAGTCATTGATCATGGCCCGTTCCCATTAGCTCAGTT
GAAGAAATTAAACCTAATTCCTAGCATGGCGTCAGTGCATACTGAGTTGGCTAACACGCCAGTGCTGAAGAAATTGTTTG
ATGTGACCAACGGCCAGTCGCCTTTTACTGCTGATTCGCGTATTTCTTACGGTGGCGATACCTCTTCTGCTATTACTTTC
ATTCCAATCAACTATAAGCAAAATAGCACTAACGTGAAGTTCTCCGGTGCCACTATCAATGCCGATGTCTCTCGTGATAT
GCACAATGTAAGTATGAGCGGCAGCAGCGATAGTTTTATTTATTCCAAAAAGAATTATTTGGATCAAACAGAACAAGTCA
GTGTGCAAGGGCTAACGCTGAAAAGTGACAGTAAAGCGGGTAAGTTCGATATCAGCATTGGCGACCAACAGATTGGTGTT
AAGCAAATAGATATCAGCCATGAAGGCAAGAACATGGCGACATTGCTTGGCTTTAATCTGAAGACCCAATTGAGCGAAAC
TGATAAAGATTTAAATGGCAAACTGAGCTATACCCTTGATGCTTTAAAAATTCAGGATAATAACTTTGGTTCAGCGCAAT
TGACTATTGCTTTTGACCGTTTCAACGGTGAGGGTCTGAAGCAGTTCATCAGTGCTTATAATAAGCGAGTACAGCTAGCT
GAAAGTGTTGATCAACTTGCCTCTCAGCAGCAAATGAGAGAAGTTGTCATGGCAAACCTTCCTGCGCTGCTGAAAGGTAA
CCCTGCAGTGAGCATTGCCCCACTGAGCTGGAAAAATACTAAAGGGGAAAGTACCTTTACCCTGAATATCGAACTGACCG
ATCCGACACAAGCTAAATCAACAGAAAAACCACTAATAGCACCCGCGGTGAAAAAATTGGACGCCAACCTGAGCATTCCA
ATGGCGATGGCTACAGAATTGGTCACTCAGGCCGCCCGCCTGCAAGGTTACAGCGAGGAAGAAGCGAAAAGTTCAGCACA
GCAACAAGTCCAGAGTCTCGCTGCAATGGGCCAGATGTTTAGGCTGACCACCACTAAAGATGATGTAATCAGCAGTAAAC
TCCAGTTTGCTGACAACCAAGTCGAATTGAATGGTCAGAAAATGTCACCAGAAGAATTTGCTGGCCTGTTTAATCTGCTT
GGTGCACAGGGAGAAGAGGAGGAAGATATTGATAGCGGCCCTGAGTCACAAGAAACGAGACTGTAA

Upstream 100 bases:

>100_bases
CTTTTTTGGGGATTTCCTTCTTTAGGTGGGGCTTCTTAAATCACTCATTACCGCGTTCAATATAGTGAATTTGGTACATT
GGAAAAGGATGAACAACACA

Downstream 100 bases:

>100_bases
ACAATATTGTGTAATTGCCTGTTTTTGATATCTTCACTCCAACAACGGAGACAGGCAAATTATGGACGAAAAGAAACTTA
AAGCACTTGCGGCTGAACTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 501; Mature: 501

Protein sequence:

>501_residues
MKKSLVAVSVIVVLGAAWTGASWYTGKLIEQRMTELVDNANGQIKTAFPNVGVKFAYKDYQRGLFSSKVRYILQSDNTFT
GEKVLSDGDEIAFIEVIDHGPFPLAQLKKLNLIPSMASVHTELANTPVLKKLFDVTNGQSPFTADSRISYGGDTSSAITF
IPINYKQNSTNVKFSGATINADVSRDMHNVSMSGSSDSFIYSKKNYLDQTEQVSVQGLTLKSDSKAGKFDISIGDQQIGV
KQIDISHEGKNMATLLGFNLKTQLSETDKDLNGKLSYTLDALKIQDNNFGSAQLTIAFDRFNGEGLKQFISAYNKRVQLA
ESVDQLASQQQMREVVMANLPALLKGNPAVSIAPLSWKNTKGESTFTLNIELTDPTQAKSTEKPLIAPAVKKLDANLSIP
MAMATELVTQAARLQGYSEEEAKSSAQQQVQSLAAMGQMFRLTTTKDDVISSKLQFADNQVELNGQKMSPEEFAGLFNLL
GAQGEEEEDIDSGPESQETRL

Sequences:

>Translated_501_residues
MKKSLVAVSVIVVLGAAWTGASWYTGKLIEQRMTELVDNANGQIKTAFPNVGVKFAYKDYQRGLFSSKVRYILQSDNTFT
GEKVLSDGDEIAFIEVIDHGPFPLAQLKKLNLIPSMASVHTELANTPVLKKLFDVTNGQSPFTADSRISYGGDTSSAITF
IPINYKQNSTNVKFSGATINADVSRDMHNVSMSGSSDSFIYSKKNYLDQTEQVSVQGLTLKSDSKAGKFDISIGDQQIGV
KQIDISHEGKNMATLLGFNLKTQLSETDKDLNGKLSYTLDALKIQDNNFGSAQLTIAFDRFNGEGLKQFISAYNKRVQLA
ESVDQLASQQQMREVVMANLPALLKGNPAVSIAPLSWKNTKGESTFTLNIELTDPTQAKSTEKPLIAPAVKKLDANLSIP
MAMATELVTQAARLQGYSEEEAKSSAQQQVQSLAAMGQMFRLTTTKDDVISSKLQFADNQVELNGQKMSPEEFAGLFNLL
GAQGEEEEDIDSGPESQETRL
>Mature_501_residues
MKKSLVAVSVIVVLGAAWTGASWYTGKLIEQRMTELVDNANGQIKTAFPNVGVKFAYKDYQRGLFSSKVRYILQSDNTFT
GEKVLSDGDEIAFIEVIDHGPFPLAQLKKLNLIPSMASVHTELANTPVLKKLFDVTNGQSPFTADSRISYGGDTSSAITF
IPINYKQNSTNVKFSGATINADVSRDMHNVSMSGSSDSFIYSKKNYLDQTEQVSVQGLTLKSDSKAGKFDISIGDQQIGV
KQIDISHEGKNMATLLGFNLKTQLSETDKDLNGKLSYTLDALKIQDNNFGSAQLTIAFDRFNGEGLKQFISAYNKRVQLA
ESVDQLASQQQMREVVMANLPALLKGNPAVSIAPLSWKNTKGESTFTLNIELTDPTQAKSTEKPLIAPAVKKLDANLSIP
MAMATELVTQAARLQGYSEEEAKSSAQQQVQSLAAMGQMFRLTTTKDDVISSKLQFADNQVELNGQKMSPEEFAGLFNLL
GAQGEEEEDIDSGPESQETRL

Specific function: Unknown

COG id: COG5339

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Periplasmic side. Note=Has been isolated in association with the inner membrane, suggesting it may be tethered to the membrane [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yihF and H.influenzae HI_1236 [H]

Homologues:

Organism=Escherichia coli, GI1787900, Length=491, Percent_Identity=42.5661914460285, Blast_Score=404, Evalue=1e-113,
Organism=Escherichia coli, GI87082339, Length=486, Percent_Identity=27.9835390946502, Blast_Score=192, Evalue=6e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010352 [H]

Pfam domain/function: PF06097 DUF945 [H]

EC number: NA

Molecular weight: Translated: 54712; Mature: 54712

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSLVAVSVIVVLGAAWTGASWYTGKLIEQRMTELVDNANGQIKTAFPNVGVKFAYKDY
CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEHHHH
QRGLFSSKVRYILQSDNTFTGEKVLSDGDEIAFIEVIDHGPFPLAQLKKLNLIPSMASVH
HCCHHHHHHHEEEECCCCCCCHHHHCCCCCEEEEEEECCCCCCHHHHHHHHCCCCHHHHH
TELANTPVLKKLFDVTNGQSPFTADSRISYGGDTSSAITFIPINYKQNSTNVKFSGATIN
HHHCCCHHHHHHHHHCCCCCCCCCCCEEECCCCCCCEEEEEEEEECCCCCEEEEECEEEE
ADVSRDMHNVSMSGSSDSFIYSKKNYLDQTEQVSVQGLTLKSDSKAGKFDISIGDQQIGV
CHHCCCHHHEEECCCCCCEEEECHHHCCCCHHEEEEEEEEECCCCCCEEEEEECCCCCCE
KQIDISHEGKNMATLLGFNLKTQLSETDKDLNGKLSYTLDALKIQDNNFGSAQLTIAFDR
EEEEECCCCCCEEEEEECCCCHHHHHCCCCCCCEEEEEEEEEEEECCCCCCEEEEEEEEC
FNGEGLKQFISAYNKRVQLAESVDQLASQQQMREVVMANLPALLKGNPAVSIAPLSWKNT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCEEEEECCCCCC
KGESTFTLNIELTDPTQAKSTEKPLIAPAVKKLDANLSIPMAMATELVTQAARLQGYSEE
CCCEEEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHH
EAKSSAQQQVQSLAAMGQMFRLTTTKDDVISSKLQFADNQVELNGQKMSPEEFAGLFNLL
HHHHHHHHHHHHHHHHHHHEEEECCHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHH
GAQGEEEEDIDSGPESQETRL
CCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKKSLVAVSVIVVLGAAWTGASWYTGKLIEQRMTELVDNANGQIKTAFPNVGVKFAYKDY
CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEHHHH
QRGLFSSKVRYILQSDNTFTGEKVLSDGDEIAFIEVIDHGPFPLAQLKKLNLIPSMASVH
HCCHHHHHHHEEEECCCCCCCHHHHCCCCCEEEEEEECCCCCCHHHHHHHHCCCCHHHHH
TELANTPVLKKLFDVTNGQSPFTADSRISYGGDTSSAITFIPINYKQNSTNVKFSGATIN
HHHCCCHHHHHHHHHCCCCCCCCCCCEEECCCCCCCEEEEEEEEECCCCCEEEEECEEEE
ADVSRDMHNVSMSGSSDSFIYSKKNYLDQTEQVSVQGLTLKSDSKAGKFDISIGDQQIGV
CHHCCCHHHEEECCCCCCEEEECHHHCCCCHHEEEEEEEEECCCCCCEEEEEECCCCCCE
KQIDISHEGKNMATLLGFNLKTQLSETDKDLNGKLSYTLDALKIQDNNFGSAQLTIAFDR
EEEEECCCCCCEEEEEECCCCHHHHHCCCCCCCEEEEEEEEEEEECCCCCCEEEEEEEEC
FNGEGLKQFISAYNKRVQLAESVDQLASQQQMREVVMANLPALLKGNPAVSIAPLSWKNT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCEEEEECCCCCC
KGESTFTLNIELTDPTQAKSTEKPLIAPAVKKLDANLSIPMAMATELVTQAARLQGYSEE
CCCEEEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHH
EAKSSAQQQVQSLAAMGQMFRLTTTKDDVISSKLQFADNQVELNGQKMSPEEFAGLFNLL
HHHHHHHHHHHHHHHHHHHEEEECCHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHH
GAQGEEEEDIDSGPESQETRL
CCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]