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The map label for this gene is yfgC [C]

Identifier: 108811478

GI number: 108811478

Start: 1498331

End: 1499815

Strand: Reverse

Name: yfgC [C]

Synonym: YPN_1315

Alternate gene names: 108811478

Gene position: 1499815-1498331 (Counterclockwise)

Preceding gene: 108811480

Following gene: 108811477

Centisome position: 33.07

GC content: 50.44

Gene sequence:

>1485_bases
ATGACAAGTCGGTTAAGTAAGACAGTGATCGCCACACTACTCAGTAGCTTGCTGCTCACCGGGCCAATATCTGCTGGAGC
GGAAACCCAAGGCCTATTACCCGCTCAAGACCTATTACCCGATATAGGTACCTCGGCAGGCGCCACGCTCAGTATTGATC
AGGAAATGGCGATGGGGGACTTTTATGTCCGCCAAATGCGCGCCAGCGCACCATTGATTTATGACCCCTTATTGACACAA
TACATCAATACATTGGGTAACCGGCTGGTTGCTAACGCTAACTCAGTACGCACCCCATTCCATTTCTATCTGGTGAATAA
CGATCAGATTAATGCTTTCGCCTTTTTTGGCGGTAACGTCGTGCTTCACTCAGCCCTATTCCGTTATACCGATAACGAAA
GCGAGTTGGCCTCCGTATTAGCTCATGAAATCTCTCACGTTACTCAGCGCCATTTAGCCAGGGCCATGGAAGAACAACAG
CGGCTCGCACCACTCACTTGGGTGGGGGTGTTAGGATCAATTCTGCTAACAATGGCCAGCCCACAAGCAGGCATGGCAGG
ATTAAGTGGGACATTGGCTGGCGCTCAGCAAGGTATTATCAGTTTTACTCAAGGCAATGAGCAAGAAGCTGACCGAATTG
GTATTCAGGTATTACAACGTTCCGGGTTTGATCCGCAAGCGATGCCTAATTTCCTGCAAAAACTGGCCGATCAGTCACGA
TATGTCTCTAAACCCCCCGAAATGTTATTGACTCACCCCTTACCAGACAGCCGTTTATCTGATGCCCGTAACCGCGCAAA
TCAGATGAAACCGCACCCTACTGCCTCATCGCAAGATTATCTCTTTGCCAAAATGCGTATTTTAGGTATGTATGGCGCGG
ATGAAAATAGCCTGACCCCTGAGCTGCTGGATAAGCTAAGTAAAGGCACAGTACGTGAGCAACTGGCGGCAAAATACGGT
CAGGCAGTCCAGCTTTATCAGGCCAAAAAATATGATGAAGCCCGTAACCTGCTACAACCCCTACTGGCGCAGCAACCCGG
CAATATTTGGTTCCTCGATCTCATGACGGATATCGATCTGGGGCAGAATAAATCAGCCGCTGCCATCGCACGTTTACAAA
ATGCGATGGTAAAACAGAATGATGAACCGGTACTGCAACTGAATCTGGCTAACGCCTATGTTCAGGGGAGGCAACCGGCA
GCAGCCATCAAACTGCTACATCGTTATACTTTTGCCTATCCGAATGATCCGAATGGCTGGGATCTATTGGCACAAGCGAC
TGCCACGCAGGGTTTACGCGATCAAGAACTGGCGGCGCGGGCAGAGAGTCTGGCGTTGAGCGGCAAGCTGACCCAGGCCA
TTGGCTTGCTCAGCGATGCCAGTGCGCGGGTGAAGTTGGGCAGCCTGGAACAAGCCCGTTATGATGCCCGAATTGACCAG
TTGCGGCGGTTAAACGAGCGTTTTCGTAAATATCAGAAGTCCTGA

Upstream 100 bases:

>100_bases
CGCTTTCGTGATGATTGTACTGGAGAGCAGTGCAAGGAAGAAGAACTCTTACACATTACGGAGTCTAATTGTCATTACAC
TAGCAGGGGCAGTCTCGTTT

Downstream 100 bases:

>100_bases
TTATTTGGGGCTATTTGCTGGCAAGCCGTTTGTTTATTGGCAGATAGCATCTGGCCTGTTGATAAACAGTAGGCTAGCTA
AGAGAAAAACAGCAAGGAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 494; Mature: 493

Protein sequence:

>494_residues
MTSRLSKTVIATLLSSLLLTGPISAGAETQGLLPAQDLLPDIGTSAGATLSIDQEMAMGDFYVRQMRASAPLIYDPLLTQ
YINTLGNRLVANANSVRTPFHFYLVNNDQINAFAFFGGNVVLHSALFRYTDNESELASVLAHEISHVTQRHLARAMEEQQ
RLAPLTWVGVLGSILLTMASPQAGMAGLSGTLAGAQQGIISFTQGNEQEADRIGIQVLQRSGFDPQAMPNFLQKLADQSR
YVSKPPEMLLTHPLPDSRLSDARNRANQMKPHPTASSQDYLFAKMRILGMYGADENSLTPELLDKLSKGTVREQLAAKYG
QAVQLYQAKKYDEARNLLQPLLAQQPGNIWFLDLMTDIDLGQNKSAAAIARLQNAMVKQNDEPVLQLNLANAYVQGRQPA
AAIKLLHRYTFAYPNDPNGWDLLAQATATQGLRDQELAARAESLALSGKLTQAIGLLSDASARVKLGSLEQARYDARIDQ
LRRLNERFRKYQKS

Sequences:

>Translated_494_residues
MTSRLSKTVIATLLSSLLLTGPISAGAETQGLLPAQDLLPDIGTSAGATLSIDQEMAMGDFYVRQMRASAPLIYDPLLTQ
YINTLGNRLVANANSVRTPFHFYLVNNDQINAFAFFGGNVVLHSALFRYTDNESELASVLAHEISHVTQRHLARAMEEQQ
RLAPLTWVGVLGSILLTMASPQAGMAGLSGTLAGAQQGIISFTQGNEQEADRIGIQVLQRSGFDPQAMPNFLQKLADQSR
YVSKPPEMLLTHPLPDSRLSDARNRANQMKPHPTASSQDYLFAKMRILGMYGADENSLTPELLDKLSKGTVREQLAAKYG
QAVQLYQAKKYDEARNLLQPLLAQQPGNIWFLDLMTDIDLGQNKSAAAIARLQNAMVKQNDEPVLQLNLANAYVQGRQPA
AAIKLLHRYTFAYPNDPNGWDLLAQATATQGLRDQELAARAESLALSGKLTQAIGLLSDASARVKLGSLEQARYDARIDQ
LRRLNERFRKYQKS
>Mature_493_residues
TSRLSKTVIATLLSSLLLTGPISAGAETQGLLPAQDLLPDIGTSAGATLSIDQEMAMGDFYVRQMRASAPLIYDPLLTQY
INTLGNRLVANANSVRTPFHFYLVNNDQINAFAFFGGNVVLHSALFRYTDNESELASVLAHEISHVTQRHLARAMEEQQR
LAPLTWVGVLGSILLTMASPQAGMAGLSGTLAGAQQGIISFTQGNEQEADRIGIQVLQRSGFDPQAMPNFLQKLADQSRY
VSKPPEMLLTHPLPDSRLSDARNRANQMKPHPTASSQDYLFAKMRILGMYGADENSLTPELLDKLSKGTVREQLAAKYGQ
AVQLYQAKKYDEARNLLQPLLAQQPGNIWFLDLMTDIDLGQNKSAAAIARLQNAMVKQNDEPVLQLNLANAYVQGRQPAA
AIKLLHRYTFAYPNDPNGWDLLAQATATQGLRDQELAARAESLALSGKLTQAIGLLSDASARVKLGSLEQARYDARIDQL
RRLNERFRKYQKS

Specific function: Unknown

COG id: COG4783

COG function: function code R; Putative Zn-dependent protease, contains TPR repeats

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 TPR repeat [H]

Homologues:

Organism=Escherichia coli, GI1788840, Length=493, Percent_Identity=69.5740365111562, Blast_Score=676, Evalue=0.0,
Organism=Escherichia coli, GI87082185, Length=228, Percent_Identity=27.1929824561404, Blast_Score=67, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001915
- InterPro:   IPR011716
- InterPro:   IPR011990 [H]

Pfam domain/function: PF01435 Peptidase_M48; PF07720 TPR_3 [H]

EC number: NA

Molecular weight: Translated: 54292; Mature: 54160

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSRLSKTVIATLLSSLLLTGPISAGAETQGLLPAQDLLPDIGTSAGATLSIDQEMAMGD
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCEEEECHHHHHHH
FYVRQMRASAPLIYDPLLTQYINTLGNRLVANANSVRTPFHFYLVNNDQINAFAFFGGNV
HHHHHHHHCCCCHHHHHHHHHHHHHHHHEECCCCCCCCCEEEEEEECCCEEEEEEECCHH
VLHSALFRYTDNESELASVLAHEISHVTQRHLARAMEEQQRLAPLTWVGVLGSILLTMAS
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
PQAGMAGLSGTLAGAQQGIISFTQGNEQEADRIGIQVLQRSGFDPQAMPNFLQKLADQSR
CCCCCCCCCHHHHHHHHCCEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
YVSKPPEMLLTHPLPDSRLSDARNRANQMKPHPTASSQDYLFAKMRILGMYGADENSLTP
HCCCCCHHEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHEECCCCCCCCH
ELLDKLSKGTVREQLAAKYGQAVQLYQAKKYDEARNLLQPLLAQQPGNIWFLDLMTDIDL
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCC
GQNKSAAAIARLQNAMVKQNDEPVLQLNLANAYVQGRQPAAAIKLLHRYTFAYPNDPNGW
CCCCHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCH
DLLAQATATQGLRDQELAARAESLALSGKLTQAIGLLSDASARVKLGSLEQARYDARIDQ
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHH
LRRLNERFRKYQKS
HHHHHHHHHHHCCC
>Mature Secondary Structure 
TSRLSKTVIATLLSSLLLTGPISAGAETQGLLPAQDLLPDIGTSAGATLSIDQEMAMGD
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCEEEECHHHHHHH
FYVRQMRASAPLIYDPLLTQYINTLGNRLVANANSVRTPFHFYLVNNDQINAFAFFGGNV
HHHHHHHHCCCCHHHHHHHHHHHHHHHHEECCCCCCCCCEEEEEEECCCEEEEEEECCHH
VLHSALFRYTDNESELASVLAHEISHVTQRHLARAMEEQQRLAPLTWVGVLGSILLTMAS
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
PQAGMAGLSGTLAGAQQGIISFTQGNEQEADRIGIQVLQRSGFDPQAMPNFLQKLADQSR
CCCCCCCCCHHHHHHHHCCEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
YVSKPPEMLLTHPLPDSRLSDARNRANQMKPHPTASSQDYLFAKMRILGMYGADENSLTP
HCCCCCHHEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHEECCCCCCCCH
ELLDKLSKGTVREQLAAKYGQAVQLYQAKKYDEARNLLQPLLAQQPGNIWFLDLMTDIDL
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCC
GQNKSAAAIARLQNAMVKQNDEPVLQLNLANAYVQGRQPAAAIKLLHRYTFAYPNDPNGW
CCCCHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCH
DLLAQATATQGLRDQELAARAESLALSGKLTQAIGLLSDASARVKLGSLEQARYDARIDQ
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHH
LRRLNERFRKYQKS
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]