Click here to switch to the map view.

The map label for this gene is csd [H]

Identifier: 108801952

GI number: 108801952

Start: 5275229

End: 5276425

Strand: Reverse

Name: csd [H]

Synonym: Mmcs_4989

Alternate gene names: 108801952

Gene position: 5276425-5275229 (Counterclockwise)

Preceding gene: 108801959

Following gene: 108801950

Centisome position: 92.48

GC content: 69.92

Gene sequence:

>1197_bases
ATGGCATACGACGTCGCCCGGGTGCGTGGATTGCACCCCTCATTGGGCGACGGTTGGGTGCACTTCGACGCCCAGCACGG
GATGCTGCTGCCCGACGCGGTGGCCACGACGGTCTCCACCGCGTTCCGGGGGTCGATGTCGACCACCGTGGGCCCGCATC
CGTCGGCGCGGCGCAGCGCCGCGGTGCTGCACGCGGCCCGCCAGGCGGTCGCCGACCTGGTGAACGGCGATCCCCGCGGT
GTGGTGCTCGGCGCCGACCGCGCGCTGCTGCTGGCCTCGCTGGCCGATGCCGCGTCGTCGCGGGTGGGTCTGGGCTACGA
GGTGGTCGTCACCCGACTGGACGACGAGGCGAACATCGCGCCGTGGCTGCGTGCGGCCAACCGGTACGGCGCCAAGATCA
AGTGGGCCGAGGTCGACATCGAAACCGGTGAACTGCCCGCCTGGCAGTGGGAGGGGTTGATCACCGGCCCGACCCGCCTG
GTGGCGATCACATCGGCGTCCTCGACCATCGGCACGGTCACCGATCTGCGGGCGGTGACCAAACTCGTACACGAGGTGGG
CGGTCTGGTCGTCGTCGACCACTCCGCGGCGGCCCCGTACCGGCTGATCGACCTCGAGGAGATCGACGCGGACGTCGTGG
CGCTCAACGCGGTGGCATGGGGCGGTCCGCCGATCGGCGCGCTGGTCTTCCGCGATCCGTCGACCATCGAACAGTTCGGT
TCGGTGTCGCTGGATCCGTATGCGACCGGGCCGGCCCGCCTGGAGGTCGGGGTGCACCAGTTCGGCATGCTCGCCGGGGT
GGTGGCCAGCATCGAGTATCTGGCGGGTCTCGACGAGAACGCCACCGGCACCCGGCGCGAGCGGCTGTCGCTGTCGATGC
AGTCCGCCACCTCGTACATGAGCAGGCTCTTCGACTACCTGTTGATGTCGCTGCGCTCGCTACCGCTGGTGATGGTGATC
GGTCAGCCCGAGGTTCGCATCCCGACGCTGAGTTTCGCGGTCCGCGACGTCCCGGCCGAGAAGGTGGTGCAGCGGCTCGC
CGACAACGGTGTGCTGGCCATCGCGAACGCGAACTCCCGGGTCCTCGACGTCATCGGCGTCGACGACATCGGCGGAGCCG
TGACGATCGGGCTTGCGCACTACACCACCACCGCCGAGGTCGACCAGCTGGTGCGCGCACTGGCGTCGCTGGGCTGA

Upstream 100 bases:

>100_bases
GGTGTCCCGATCCGGTGCGGCGACGGGCGCGCGCACGGTCGGACGCCGACGGAAAATCGTGTCGGTTTGTGGAATTCACG
AACGCTCTAAGGTGGCTGGA

Downstream 100 bases:

>100_bases
CTCAGTCGCGTACCCGCAGCAGCACCTTGCCCGACACCTCACCGGAGTCGAGCATCTCCTGCGCGGCCTGCGCCTCCTGT
ACCGGGAATTCCGCGCCGAT

Product: cysteine desulfurase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 398; Mature: 397

Protein sequence:

>398_residues
MAYDVARVRGLHPSLGDGWVHFDAQHGMLLPDAVATTVSTAFRGSMSTTVGPHPSARRSAAVLHAARQAVADLVNGDPRG
VVLGADRALLLASLADAASSRVGLGYEVVVTRLDDEANIAPWLRAANRYGAKIKWAEVDIETGELPAWQWEGLITGPTRL
VAITSASSTIGTVTDLRAVTKLVHEVGGLVVVDHSAAAPYRLIDLEEIDADVVALNAVAWGGPPIGALVFRDPSTIEQFG
SVSLDPYATGPARLEVGVHQFGMLAGVVASIEYLAGLDENATGTRRERLSLSMQSATSYMSRLFDYLLMSLRSLPLVMVI
GQPEVRIPTLSFAVRDVPAEKVVQRLADNGVLAIANANSRVLDVIGVDDIGGAVTIGLAHYTTTAEVDQLVRALASLG

Sequences:

>Translated_398_residues
MAYDVARVRGLHPSLGDGWVHFDAQHGMLLPDAVATTVSTAFRGSMSTTVGPHPSARRSAAVLHAARQAVADLVNGDPRG
VVLGADRALLLASLADAASSRVGLGYEVVVTRLDDEANIAPWLRAANRYGAKIKWAEVDIETGELPAWQWEGLITGPTRL
VAITSASSTIGTVTDLRAVTKLVHEVGGLVVVDHSAAAPYRLIDLEEIDADVVALNAVAWGGPPIGALVFRDPSTIEQFG
SVSLDPYATGPARLEVGVHQFGMLAGVVASIEYLAGLDENATGTRRERLSLSMQSATSYMSRLFDYLLMSLRSLPLVMVI
GQPEVRIPTLSFAVRDVPAEKVVQRLADNGVLAIANANSRVLDVIGVDDIGGAVTIGLAHYTTTAEVDQLVRALASLG
>Mature_397_residues
AYDVARVRGLHPSLGDGWVHFDAQHGMLLPDAVATTVSTAFRGSMSTTVGPHPSARRSAAVLHAARQAVADLVNGDPRGV
VLGADRALLLASLADAASSRVGLGYEVVVTRLDDEANIAPWLRAANRYGAKIKWAEVDIETGELPAWQWEGLITGPTRLV
AITSASSTIGTVTDLRAVTKLVHEVGGLVVVDHSAAAPYRLIDLEEIDADVVALNAVAWGGPPIGALVFRDPSTIEQFGS
VSLDPYATGPARLEVGVHQFGMLAGVVASIEYLAGLDENATGTRRERLSLSMQSATSYMSRLFDYLLMSLRSLPLVMVIG
QPEVRIPTLSFAVRDVPAEKVVQRLADNGVLAIANANSRVLDVIGVDDIGGAVTIGLAHYTTTAEVDQLVRALASLG

Specific function: Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine [H]

COG id: COG0520

COG function: function code E; Selenocysteine lyase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. Csd subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787970, Length=354, Percent_Identity=25.4237288135593, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1789175, Length=412, Percent_Identity=25.2427184466019, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI48994898, Length=345, Percent_Identity=24.3478260869565, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000192
- InterPro:   IPR010970
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00266 Aminotran_5 [H]

EC number: =2.8.1.7 [H]

Molecular weight: Translated: 42008; Mature: 41877

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYDVARVRGLHPSLGDGWVHFDAQHGMLLPDAVATTVSTAFRGSMSTTVGPHPSARRSA
CCCCCHHHCCCCCCCCCCEEEEECCCCEECCHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
AVLHAARQAVADLVNGDPRGVVLGADRALLLASLADAASSRVGLGYEVVVTRLDDEANIA
HHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCC
PWLRAANRYGAKIKWAEVDIETGELPAWQWEGLITGPTRLVAITSASSTIGTVTDLRAVT
HHHHHHHHCCCEEEEEEEEEECCCCCCEEECCEEECCEEEEEEEECCCCHHHHHHHHHHH
KLVHEVGGLVVVDHSAAAPYRLIDLEEIDADVVALNAVAWGGPPIGALVFRDPSTIEQFG
HHHHHHCCEEEEECCCCCCEEEEEHHHCCCCEEEEEEEEECCCCCCEEEECCCHHHHHHC
SVSLDPYATGPARLEVGVHQFGMLAGVVASIEYLAGLDENATGTRRERLSLSMQSATSYM
CCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
SRLFDYLLMSLRSLPLVMVIGQPEVRIPTLSFAVRDVPAEKVVQRLADNGVLAIANANSR
HHHHHHHHHHHCCCCEEEEECCCCEECCCHHHHHHCCCHHHHHHHHHCCCEEEEECCCCE
VLDVIGVDDIGGAVTIGLAHYTTTAEVDQLVRALASLG
EEEEEECCCCCCEEEEEEECCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AYDVARVRGLHPSLGDGWVHFDAQHGMLLPDAVATTVSTAFRGSMSTTVGPHPSARRSA
CCCCHHHCCCCCCCCCCEEEEECCCCEECCHHHHHHHHHHHCCCCCCCCCCCCCHHHHH
AVLHAARQAVADLVNGDPRGVVLGADRALLLASLADAASSRVGLGYEVVVTRLDDEANIA
HHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCC
PWLRAANRYGAKIKWAEVDIETGELPAWQWEGLITGPTRLVAITSASSTIGTVTDLRAVT
HHHHHHHHCCCEEEEEEEEEECCCCCCEEECCEEECCEEEEEEEECCCCHHHHHHHHHHH
KLVHEVGGLVVVDHSAAAPYRLIDLEEIDADVVALNAVAWGGPPIGALVFRDPSTIEQFG
HHHHHHCCEEEEECCCCCCEEEEEHHHCCCCEEEEEEEEECCCCCCEEEECCCHHHHHHC
SVSLDPYATGPARLEVGVHQFGMLAGVVASIEYLAGLDENATGTRRERLSLSMQSATSYM
CCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
SRLFDYLLMSLRSLPLVMVIGQPEVRIPTLSFAVRDVPAEKVVQRLADNGVLAIANANSR
HHHHHHHHHHHCCCCEEEEECCCCEECCCHHHHHHCCCHHHHHHHHHCCCEEEEECCCCE
VLDVIGVDDIGGAVTIGLAHYTTTAEVDQLVRALASLG
EEEEEECCCCCCEEEEEEECCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12000953 [H]