Click here to switch to the map view.

The map label for this gene is ydeB [H]

Identifier: 108801703

GI number: 108801703

Start: 5017807

End: 5018295

Strand: Reverse

Name: ydeB [H]

Synonym: Mmcs_4740

Alternate gene names: 108801703

Gene position: 5018295-5017807 (Counterclockwise)

Preceding gene: 108801707

Following gene: 108801702

Centisome position: 87.96

GC content: 62.78

Gene sequence:

>489_bases
ATGATTTTCAAGGTCGGAGACACCGTTGTATATCCACACCACGGTGCTGCGTTGATCGAAGCGATCGAAACCCGAACCAT
CAAGGGCGAGCAGAAGGAGTATCTCGTCCTCAAGGTCGCCCAGGGCGATCTCACTGTTCGAGTACCCGCTGACAACGCCG
AATATGTCGGGGTGCGCGACGTTGTCGGCCAGGAGGGTCTGGACAAGGTCTTCCAGGTGCTGCGCGCGCCGCACACCGAG
GAGCCGACGAACTGGTCACGCCGGTACAAGGCGAATCTGGAGAAGCTGGCATCGGGCGACGTGAACAAGGTCGCCGAGGT
GGTGCGCGACCTGTGGCGTCGCGATCAGGAGCGCGGCCTGTCCGCAGGCGAGAAGCGCATGCTGGCCAAGGCCCGTCAGA
TCCTGGTCGGTGAGCTGGCGCTCGCCGAGAACGTCGAAGACGAGAAGGCCACGATCATCCTCGACGAGGCGTTGGCTGCC
GCGTCCTGA

Upstream 100 bases:

>100_bases
AACCCCTGATCTTCATCCGTTGTGCCCCTGACCTGCACAGTTGTTCCGCACGTGTCGGCGGCCCGTGTTAACATGGACAC
GTGAAAGGGGCTCGAAACTG

Downstream 100 bases:

>100_bases
CGCACACATGACCACGGTGGCCGTTGTTCCGGCCGCGGGTTCCGGTCAACGGCTCGCGGCCGGCGCGCCCAAAGCGTTCG
TGAATCTCGCCGGGCGGCCG

Product: CarD family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 162

Protein sequence:

>162_residues
MIFKVGDTVVYPHHGAALIEAIETRTIKGEQKEYLVLKVAQGDLTVRVPADNAEYVGVRDVVGQEGLDKVFQVLRAPHTE
EPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGLSAGEKRMLAKARQILVGELALAENVEDEKATIILDEALAA
AS

Sequences:

>Translated_162_residues
MIFKVGDTVVYPHHGAALIEAIETRTIKGEQKEYLVLKVAQGDLTVRVPADNAEYVGVRDVVGQEGLDKVFQVLRAPHTE
EPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGLSAGEKRMLAKARQILVGELALAENVEDEKATIILDEALAA
AS
>Mature_162_residues
MIFKVGDTVVYPHHGAALIEAIETRTIKGEQKEYLVLKVAQGDLTVRVPADNAEYVGVRDVVGQEGLDKVFQVLRAPHTE
EPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGLSAGEKRMLAKARQILVGELALAENVEDEKATIILDEALAA
AS

Specific function: Unknown

COG id: COG1329

COG function: function code K; Transcriptional regulators, similar to M. xanthus CarD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003711 [H]

Pfam domain/function: PF02559 CarD_TRCF [H]

EC number: NA

Molecular weight: Translated: 17961; Mature: 17961

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIFKVGDTVVYPHHGAALIEAIETRTIKGEQKEYLVLKVAQGDLTVRVPADNAEYVGVRD
CEEECCCEEEECCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCEEEEECCCCCCCCCHHH
VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL
HHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
SAGEKRMLAKARQILVGELALAENVEDEKATIILDEALAAAS
CHHHHHHHHHHHHHHHHHHHHHCCCCCCHHEEEEHHHHHCCC
>Mature Secondary Structure
MIFKVGDTVVYPHHGAALIEAIETRTIKGEQKEYLVLKVAQGDLTVRVPADNAEYVGVRD
CEEECCCEEEECCCCHHHHHHHHHHCCCCCCCEEEEEEEECCCEEEEECCCCCCCCCHHH
VVGQEGLDKVFQVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDQERGL
HHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
SAGEKRMLAKARQILVGELALAENVEDEKATIILDEALAAAS
CHHHHHHHHHHHHHHHHHHHHHCCCCCCHHEEEEHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]