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The map label for this gene is yjfH [C]

Identifier: 108801699

GI number: 108801699

Start: 5014239

End: 5015183

Strand: Reverse

Name: yjfH [C]

Synonym: Mmcs_4736

Alternate gene names: 108801699

Gene position: 5015183-5014239 (Counterclockwise)

Preceding gene: 108801700

Following gene: 108801697

Centisome position: 87.9

GC content: 71.64

Gene sequence:

>945_bases
ATGGCGGGTAACTCGAAACGCCGTGGCGCAGTGCGCAAAGCAGGCACCAAGAAGGGGCCGACCGTCGGTTCGGGCGGCGT
GCGCCGTCGCGGGCTCGAAGGTCGCGGCGCCACACCGCCGGCCCATCAGCGGCCCAACCATCCGGCGGCCAAACGCGCCG
CGAAGGCGGCCAAGCAACAGCAGCGGCGCCCGGCACGCAAGACCGACGAGACCGAACTGGTGCTCGGCCGCAACCCCGTC
GTCGAGTGTCTGCGCGCCGAGGTGCCGGCCACCGCGTTGTACGTCGCGATGGGCACCGAGGCCGACGAGCGGGTGACCGA
GGCCGTCCAGATCGCCGCCGACAACGGGATCTCGATCCTCGAGGTGCCGCGCTCGGATCTGGACCGGATGAGCAACAACG
CCCTGCATCAGGGGTTGGGTTTGCAGGTACCGCCCTACGACTACGCCCACCCCGACGATCTGCTCGCCACGGCGAAGGCC
GACGGCGCTCCCGCGCTACTGGTCGCACTGGACAACATCTCCGATCCGCGCAACCTCGGCGCGATCGTGCGCTCGGTGGC
GGCGTTCGGCGGCCACGGGGTGCTGATCCCGCAGCGCCGCTCGGCGTCGGTGACCGCGGTCGCCTGGCGCACGAGTGCCG
GTGCGGCGGCACGACTTCCGGTCGCCCGGGCCACCAACCTCAACCGCACGCTCAAGAGTTGGGCCGACGGGGGCCTGCAG
GTGGTCGGCCTGGACGCCGACGGGGACACCACGCTCGACGAACTCGACGGCACCGGCCCGGTCGTGGTGGTGGTCGGTTC
GGAGGGCAAGGGGTTGTCGCGGCTGGTCCGCGAAAACTGCGATGCGGTGGTGTCGATCCCGATGGCCGGTCCGACCGAAT
CGCTGAACGCCTCGGTGGCCGCCGGGGTGGTGCTCGCCGAGATCGCCCGCCAGCGCCGCAGCTGA

Upstream 100 bases:

>100_bases
AGATCCGTGACCGGCTCAAAGAAGCCGGCATCGAGGTGACCGACACCGCCGACGGTCCGCAGTGGTCGCTGCTCGACGGC
GACAGCAAGGATGTCTGACG

Downstream 100 bases:

>100_bases
TCGACCCGCGTCAGATCACTCTCGTCAGCCCGCTGCGCCACAGTGTTCGATTGTCCGCAGGATCGCCGCGGTGCGCTCGT
CGCAGCGCCCGACCAGTGGG

Product: RNA methyltransferase TrmH, group 3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 313

Protein sequence:

>314_residues
MAGNSKRRGAVRKAGTKKGPTVGSGGVRRRGLEGRGATPPAHQRPNHPAAKRAAKAAKQQQRRPARKTDETELVLGRNPV
VECLRAEVPATALYVAMGTEADERVTEAVQIAADNGISILEVPRSDLDRMSNNALHQGLGLQVPPYDYAHPDDLLATAKA
DGAPALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARLPVARATNLNRTLKSWADGGLQ
VVGLDADGDTTLDELDGTGPVVVVVGSEGKGLSRLVRENCDAVVSIPMAGPTESLNASVAAGVVLAEIARQRRS

Sequences:

>Translated_314_residues
MAGNSKRRGAVRKAGTKKGPTVGSGGVRRRGLEGRGATPPAHQRPNHPAAKRAAKAAKQQQRRPARKTDETELVLGRNPV
VECLRAEVPATALYVAMGTEADERVTEAVQIAADNGISILEVPRSDLDRMSNNALHQGLGLQVPPYDYAHPDDLLATAKA
DGAPALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARLPVARATNLNRTLKSWADGGLQ
VVGLDADGDTTLDELDGTGPVVVVVGSEGKGLSRLVRENCDAVVSIPMAGPTESLNASVAAGVVLAEIARQRRS
>Mature_313_residues
AGNSKRRGAVRKAGTKKGPTVGSGGVRRRGLEGRGATPPAHQRPNHPAAKRAAKAAKQQQRRPARKTDETELVLGRNPVV
ECLRAEVPATALYVAMGTEADERVTEAVQIAADNGISILEVPRSDLDRMSNNALHQGLGLQVPPYDYAHPDDLLATAKAD
GAPALLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARLPVARATNLNRTLKSWADGGLQV
VGLDADGDTTLDELDGTGPVVVVVGSEGKGLSRLVRENCDAVVSIPMAGPTESLNASVAAGVVLAEIARQRRS

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family

Homologues:

Organism=Homo sapiens, GI40068479, Length=263, Percent_Identity=30.0380228136882, Blast_Score=99, Evalue=4e-21,
Organism=Escherichia coli, GI1790623, Length=243, Percent_Identity=38.2716049382716, Blast_Score=157, Evalue=7e-40,
Organism=Escherichia coli, GI1788935, Length=249, Percent_Identity=27.710843373494, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1790083, Length=173, Percent_Identity=28.3236994219653, Blast_Score=69, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17555908, Length=302, Percent_Identity=29.4701986754967, Blast_Score=94, Evalue=7e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y4736_MYCSS (Q1B2P4)

Other databases:

- EMBL:   CP000384
- RefSeq:   YP_641896.1
- ProteinModelPortal:   Q1B2P4
- SMR:   Q1B2P4
- STRING:   Q1B2P4
- EnsemblBacteria:   EBMYCT00000060214
- GeneID:   4113565
- GenomeReviews:   CP000384_GR
- KEGG:   mmc:Mmcs_4736
- eggNOG:   COG0566
- GeneTree:   EBGT00050000015604
- HOGENOM:   HBG714057
- OMA:   MTASAWK
- ProtClustDB:   CLSK725841
- BioCyc:   MSP164756:MMCS_4736-MONOMER
- InterPro:   IPR004441
- InterPro:   IPR001537
- InterPro:   IPR013123
- SMART:   SM00967
- TIGRFAMs:   TIGR00186

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind

EC number: 2.1.1.- [C]

Molecular weight: Translated: 32668; Mature: 32537

Theoretical pI: Translated: 10.49; Mature: 10.49

Prosite motif: NA

Important sites: BINDING 266-266 BINDING 286-286 BINDING 295-295

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGNSKRRGAVRKAGTKKGPTVGSGGVRRRGLEGRGATPPAHQRPNHPAAKRAAKAAKQQ
CCCCCCCCCHHHHCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
QRRPARKTDETELVLGRNPVVECLRAEVPATALYVAMGTEADERVTEAVQIAADNGISIL
HHCCCCCCCCCEEEECCCHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCEEE
EVPRSDLDRMSNNALHQGLGLQVPPYDYAHPDDLLATAKADGAPALLVALDNISDPRNLG
ECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEEECCCCCHHHHH
AIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARLPVARATNLNRTLKSWADGGLQ
HHHHHHHHHCCCEEEEECCCCCCEEEEEEECCCCCHHHCCHHHHCCHHHHHHHHCCCCEE
VVGLDADGDTTLDELDGTGPVVVVVGSEGKGLSRLVRENCDAVVSIPMAGPTESLNASVA
EEEECCCCCCCHHHCCCCCCEEEEECCCCCCHHHHHHCCCCEEEEECCCCCCCCCCHHHH
AGVVLAEIARQRRS
HHHHHHHHHHHHCC
>Mature Secondary Structure 
AGNSKRRGAVRKAGTKKGPTVGSGGVRRRGLEGRGATPPAHQRPNHPAAKRAAKAAKQQ
CCCCCCCCHHHHCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
QRRPARKTDETELVLGRNPVVECLRAEVPATALYVAMGTEADERVTEAVQIAADNGISIL
HHCCCCCCCCCEEEECCCHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCEEE
EVPRSDLDRMSNNALHQGLGLQVPPYDYAHPDDLLATAKADGAPALLVALDNISDPRNLG
ECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEEECCCCCHHHHH
AIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARLPVARATNLNRTLKSWADGGLQ
HHHHHHHHHCCCEEEEECCCCCCEEEEEEECCCCCHHHCCHHHHCCHHHHHHHHCCCCEE
VVGLDADGDTTLDELDGTGPVVVVVGSEGKGLSRLVRENCDAVVSIPMAGPTESLNASVA
EEEECCCCCCCHHHCCCCCCEEEEECCCCCCHHHHHHCCCCEEEEECCCCCCCCCCHHHH
AGVVLAEIARQRRS
HHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA