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The map label for this gene is yqfA [C]

Identifier: 108801621

GI number: 108801621

Start: 4935405

End: 4936217

Strand: Reverse

Name: yqfA [C]

Synonym: Mmcs_4658

Alternate gene names: 108801621

Gene position: 4936217-4935405 (Counterclockwise)

Preceding gene: 108801622

Following gene: 108801620

Centisome position: 86.52

GC content: 69.37

Gene sequence:

>813_bases
GTGCAGCGCGTCGCCCCCCGGGCGACCGCACGCCGGATCCCGGTCCGGCAACACCCGCGATATCGGAGATCTCCTGAGCG
ACCCAGTGCGTGTAATGGCCCGTCCGTGATCACCGGCCCGCCGGGTCCGGAGGCGATCGAAGCCCTGCAGCCCGATCCAG
TCGACGAACTGATCGTCCGACCGCGTGCGCGGGGGCTGATCCACCTCGTCTCGGCGGTCGTCGCCGTGGTGGCGGGTGCG
GCGCTGGTCGAGGTGGCGTGGACCGGATCGGCATCCTCGCGAGCAGGGTGGGCCGCGCTGATCTACGTCGCCGCGATCAT
CGCCATGTTCGGGGTGAGCGCGGCGTACCACCGCGTGCGGTGGACGTCACCGTCCGCCGAGAAGTGGATGATGCGCCTCG
ACCACTCGGTGATCTTCGTGTTCATCGCGGCGACCTACACCCCGTTCGCGGTGCTCGCACTGCCGCCCGACACCGGGACG
AAGGCGCTGACGATCGTGTGGACCGGGGCCGCTGCCGGTGTCGCCCTCAAGATGCTGTGGCCGTCCGCGCCGCGCTGGGT
GGGCGTACCCCTGTATCTGATGCTCGGCTATGTGGCGCTGCTGTTCGCCGAGGCGCTGCTGATCGGTGCCGGTTTCACCG
TCGTCGCGCTGCTCGCCGCCGGTGCGGTCCTCTACAACATCGGTGCGATCTTCTATGGCGTCCGCTGGCCGAATCCGTGG
CCGAACACGTTCGCCCACCACGAGTTCTTCCACGCGTTCACCGTGGCCGCGGCGGTCTGCCACTTCGCCGCCATCTGGCT
CGTCATCCGGTAG

Upstream 100 bases:

>100_bases
ACATCGCGCTGGAGATCAAACGAGAACAGGACAGCGGGGCGACGGCCGCGCACTGACCCCGGCGCTGCTGCACCGTGTCG
TGGTTTCCCCACTGTAGGCT

Downstream 100 bases:

>100_bases
TCGGACCCGGCAGGCACGATAGGGCACATGCCGACCCGTGACGACGCCCAGGCGCTGCTCGAACAACTCGCCGGCCCGCA
GGCCACACTGCGCGACGATC

Product: hemolysin III family channel protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MQRVAPRATARRIPVRQHPRYRRSPERPSACNGPSVITGPPGPEAIEALQPDPVDELIVRPRARGLIHLVSAVVAVVAGA
ALVEVAWTGSASSRAGWAALIYVAAIIAMFGVSAAYHRVRWTSPSAEKWMMRLDHSVIFVFIAATYTPFAVLALPPDTGT
KALTIVWTGAAAGVALKMLWPSAPRWVGVPLYLMLGYVALLFAEALLIGAGFTVVALLAAGAVLYNIGAIFYGVRWPNPW
PNTFAHHEFFHAFTVAAAVCHFAAIWLVIR

Sequences:

>Translated_270_residues
MQRVAPRATARRIPVRQHPRYRRSPERPSACNGPSVITGPPGPEAIEALQPDPVDELIVRPRARGLIHLVSAVVAVVAGA
ALVEVAWTGSASSRAGWAALIYVAAIIAMFGVSAAYHRVRWTSPSAEKWMMRLDHSVIFVFIAATYTPFAVLALPPDTGT
KALTIVWTGAAAGVALKMLWPSAPRWVGVPLYLMLGYVALLFAEALLIGAGFTVVALLAAGAVLYNIGAIFYGVRWPNPW
PNTFAHHEFFHAFTVAAAVCHFAAIWLVIR
>Mature_270_residues
MQRVAPRATARRIPVRQHPRYRRSPERPSACNGPSVITGPPGPEAIEALQPDPVDELIVRPRARGLIHLVSAVVAVVAGA
ALVEVAWTGSASSRAGWAALIYVAAIIAMFGVSAAYHRVRWTSPSAEKWMMRLDHSVIFVFIAATYTPFAVLALPPDTGT
KALTIVWTGAAAGVALKMLWPSAPRWVGVPLYLMLGYVALLFAEALLIGAGFTVVALLAAGAVLYNIGAIFYGVRWPNPW
PNTFAHHEFFHAFTVAAAVCHFAAIWLVIR

Specific function: Unknown

COG id: COG1272

COG function: function code R; Predicted membrane protein, hemolysin III homolog

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0073 (Hly-III) family [H]

Homologues:

Organism=Escherichia coli, GI1789266, Length=204, Percent_Identity=29.9019607843137, Blast_Score=85, Evalue=5e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004254
- InterPro:   IPR005744 [H]

Pfam domain/function: PF03006 HlyIII [H]

EC number: NA

Molecular weight: Translated: 29121; Mature: 29121

Theoretical pI: Translated: 10.52; Mature: 10.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRVAPRATARRIPVRQHPRYRRSPERPSACNGPSVITGPPGPEAIEALQPDPVDELIVR
CCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHCCCCCHHHHHHC
PRARGLIHLVSAVVAVVAGAALVEVAWTGSASSRAGWAALIYVAAIIAMFGVSAAYHRVR
CCHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEE
WTSPSAEKWMMRLDHSVIFVFIAATYTPFAVLALPPDTGTKALTIVWTGAAAGVALKMLW
ECCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEEEECCHHHHHHHHHC
PSAPRWVGVPLYLMLGYVALLFAEALLIGAGFTVVALLAAGAVLYNIGAIFYGVRWPNPW
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHEECCCCCCC
PNTFAHHEFFHAFTVAAAVCHFAAIWLVIR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQRVAPRATARRIPVRQHPRYRRSPERPSACNGPSVITGPPGPEAIEALQPDPVDELIVR
CCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHCCCCCHHHHHHC
PRARGLIHLVSAVVAVVAGAALVEVAWTGSASSRAGWAALIYVAAIIAMFGVSAAYHRVR
CCHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEE
WTSPSAEKWMMRLDHSVIFVFIAATYTPFAVLALPPDTGTKALTIVWTGAAAGVALKMLW
ECCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEEEECCHHHHHHHHHC
PSAPRWVGVPLYLMLGYVALLFAEALLIGAGFTVVALLAAGAVLYNIGAIFYGVRWPNPW
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHEECCCCCCC
PNTFAHHEFFHAFTVAAAVCHFAAIWLVIR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]