| Definition | Mycobacterium sp. MCS chromosome, complete genome. |
|---|---|
| Accession | NC_008146 |
| Length | 5,705,448 |
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The map label for this gene is ytcI [H]
Identifier: 108801401
GI number: 108801401
Start: 4717796
End: 4719493
Strand: Reverse
Name: ytcI [H]
Synonym: Mmcs_4438
Alternate gene names: 108801401
Gene position: 4719493-4717796 (Counterclockwise)
Preceding gene: 108801406
Following gene: 108801400
Centisome position: 82.72
GC content: 68.85
Gene sequence:
>1698_bases ATGAGCACGAACACCGATCTGTACCGCAGCGCGCGTGACCAGTTGGTCGCAGTCATCGGCGACTACGACAAGGCGCTGCA GAGCTTCGAGTGGCCCCGGCTGGAGGGCGCGTTCAACTGGGCCACCGACTGGTTCGACGTCATCGCGCGCGACCCGATCA CCGCCGACCGGCGGGCGCTGTGGATCGTCGAGGAGGACGGCCGCGAAGAGCAGATCACGTTCGCCCAGATGGCGGACCGC TCCGACCGGGTGGCCACCTGGCTGGAGCGGCGCGGCATCGGCAAGGGCGACCGGGTGATCCTCATGCTCGGCAACCAGGT GGAGCTGTGGGAGGCCATGCTGGCGGTGGCCAAGCTGGGTGCGGTCATCATGCCGACCACCGGTGCGCTCGGCCCGGCCG ACCTCGCCGACCGCATCACCCGCGGCGGCGCGACGGCGGTGATCGCCAACGCCGCGGACACCGCGAAGTTCACCGAGGTG CCCGGCGACTACCTGCGCATCGCGGTCGGCGCCCCGGTCGCGGGGTGGCACACCTACGGCGAGGCCTACGACACCGTGTC GGCCGGTCCGTTCACCGCGCGCACCACCGTCGACGACACGATGCTGATCTACTTCACCTCCGGCACCACCAGCAAGCCCA AACTCGTCGAGCACTCGCAGGTGAGCTACCCGGTCGGCCACCTGTCGACGATGGGGTGGATCGGGGTGCGGCCCGGTGAC GTGCACCTGGCCATCAGTTCTCCCGGCTGGGCCAAACACGCGTGGAGCTGTTTCTTCGCACCGTGGATCGCCGAGGCGAC GATCTTCGTCTACAACTACCGCCGCTTCGACGCCGCGGCGCTGCTGCGCCAGCTGAACCGGGCGCAGGTCAACACCTTCT GCGCACCGCCGACGGTGTGGCGCATGCTCATCCAGTCCGATCTCGGCACGAAACCCGCGGGGCTGCGCGAGATCCTGGGC GCCGGCGAACCGCTCAACCCCGACGTCATCGCTCAGGTGGAGAAGGCGTGGGGCCTGACGATCCGCGACGGTTTCGGCCA GACCGAGACGACGCTGCAGATCGGCAACACCCCGGGTCAGCCGGTCAAACCCGGCTCGATGGGGCGGCCGATGCCGGGTG TGCCCGTCGTCCTGGTCGATCCGCTCACCGGCCGGCCGGCCGAGGAGGGCGAGATCTGCCTGGACCTGAGCCGGCAGCCG GTCAACTTGATGACCGGCTACCTCGACGATCCCGCCCGAAACGCCGCGGTGACCGAGGGTGGCTACTACCACACCGGCGA TGTCGCCCAACGGGATTCGGACGGCTACATCACCTACATCGGCCGCACCGACGACGTCTTCAAGTCATCGGACTACAAGG TGTCGCCGTTCGAGCTGGAGAGCGTGCTGATCGAGCACCCCGCCGTCGTCGAGGCCGCCGTGGTGCCGCAGCCCGACGAC ACAAGGCTGTCCGTGCCGAAAGCGTATGTCGCACTTGCCGAGGGCTGGCAGGCCGACGCCGACACCGCGAAGTCGATCAT GGAGTACGCCCGCGATCACCTGGCGCCGTACCTGAAGGTGCGCCGCGTCGAGTTCTACGAACTGCCCAAGACGATCTCCG GCAAGATCCGGCGGGTCGAGTTGCGCCGCCGCGAGGAGGACAGCGCCGGGCGCGCGATCCCCACCGAGTACCGCTACGAG GACCTGGTGGCCGGATGA
Upstream 100 bases:
>100_bases CGGCGTCGCGCGGTCGCAGCAGCGACGGGACCCACGGGCTCACGGACAACACCTCTTTCGGGGGTAGCGAGTGGACGTGT GTGACGTAGAGCATATCCGC
Downstream 100 bases:
>100_bases AGTCCTACGACGCCGGACCCACCACCACCCCGATCATCGAGGAGACGATCGGGGCGCATCTCGAACGCATCGTGGCGCAG CACCCCGACACCGAGGCGCT
Product: AMP-dependent synthetase and ligase
Products: AMP; diphosphate; acetyl-CoA
Alternate protein names: NA
Number of amino acids: Translated: 565; Mature: 564
Protein sequence:
>565_residues MSTNTDLYRSARDQLVAVIGDYDKALQSFEWPRLEGAFNWATDWFDVIARDPITADRRALWIVEEDGREEQITFAQMADR SDRVATWLERRGIGKGDRVILMLGNQVELWEAMLAVAKLGAVIMPTTGALGPADLADRITRGGATAVIANAADTAKFTEV PGDYLRIAVGAPVAGWHTYGEAYDTVSAGPFTARTTVDDTMLIYFTSGTTSKPKLVEHSQVSYPVGHLSTMGWIGVRPGD VHLAISSPGWAKHAWSCFFAPWIAEATIFVYNYRRFDAAALLRQLNRAQVNTFCAPPTVWRMLIQSDLGTKPAGLREILG AGEPLNPDVIAQVEKAWGLTIRDGFGQTETTLQIGNTPGQPVKPGSMGRPMPGVPVVLVDPLTGRPAEEGEICLDLSRQP VNLMTGYLDDPARNAAVTEGGYYHTGDVAQRDSDGYITYIGRTDDVFKSSDYKVSPFELESVLIEHPAVVEAAVVPQPDD TRLSVPKAYVALAEGWQADADTAKSIMEYARDHLAPYLKVRRVEFYELPKTISGKIRRVELRRREEDSAGRAIPTEYRYE DLVAG
Sequences:
>Translated_565_residues MSTNTDLYRSARDQLVAVIGDYDKALQSFEWPRLEGAFNWATDWFDVIARDPITADRRALWIVEEDGREEQITFAQMADR SDRVATWLERRGIGKGDRVILMLGNQVELWEAMLAVAKLGAVIMPTTGALGPADLADRITRGGATAVIANAADTAKFTEV PGDYLRIAVGAPVAGWHTYGEAYDTVSAGPFTARTTVDDTMLIYFTSGTTSKPKLVEHSQVSYPVGHLSTMGWIGVRPGD VHLAISSPGWAKHAWSCFFAPWIAEATIFVYNYRRFDAAALLRQLNRAQVNTFCAPPTVWRMLIQSDLGTKPAGLREILG AGEPLNPDVIAQVEKAWGLTIRDGFGQTETTLQIGNTPGQPVKPGSMGRPMPGVPVVLVDPLTGRPAEEGEICLDLSRQP VNLMTGYLDDPARNAAVTEGGYYHTGDVAQRDSDGYITYIGRTDDVFKSSDYKVSPFELESVLIEHPAVVEAAVVPQPDD TRLSVPKAYVALAEGWQADADTAKSIMEYARDHLAPYLKVRRVEFYELPKTISGKIRRVELRRREEDSAGRAIPTEYRYE DLVAG >Mature_564_residues STNTDLYRSARDQLVAVIGDYDKALQSFEWPRLEGAFNWATDWFDVIARDPITADRRALWIVEEDGREEQITFAQMADRS DRVATWLERRGIGKGDRVILMLGNQVELWEAMLAVAKLGAVIMPTTGALGPADLADRITRGGATAVIANAADTAKFTEVP GDYLRIAVGAPVAGWHTYGEAYDTVSAGPFTARTTVDDTMLIYFTSGTTSKPKLVEHSQVSYPVGHLSTMGWIGVRPGDV HLAISSPGWAKHAWSCFFAPWIAEATIFVYNYRRFDAAALLRQLNRAQVNTFCAPPTVWRMLIQSDLGTKPAGLREILGA GEPLNPDVIAQVEKAWGLTIRDGFGQTETTLQIGNTPGQPVKPGSMGRPMPGVPVVLVDPLTGRPAEEGEICLDLSRQPV NLMTGYLDDPARNAAVTEGGYYHTGDVAQRDSDGYITYIGRTDDVFKSSDYKVSPFELESVLIEHPAVVEAAVVPQPDDT RLSVPKAYVALAEGWQADADTAKSIMEYARDHLAPYLKVRRVEFYELPKTISGKIRRVELRRREEDSAGRAIPTEYRYED LVAG
Specific function: Enables The Cell To Use Acetate During Aerobic Growth To Generate Energy Via The Tca Cycle, And Biosynthetic Compounds Via The Glyoxylate Shunt. Acetylates Chey, The Response Regulator Involved In Flagellar Movement And Chemotaxis. [C]
COG id: COG0365
COG function: function code I; Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ATP-dependent AMP-binding enzyme family [H]
Homologues:
Organism=Homo sapiens, GI42544132, Length=559, Percent_Identity=36.6726296958855, Blast_Score=338, Evalue=1e-92, Organism=Homo sapiens, GI122937307, Length=530, Percent_Identity=37.3584905660377, Blast_Score=307, Evalue=2e-83, Organism=Homo sapiens, GI38505220, Length=525, Percent_Identity=35.6190476190476, Blast_Score=299, Evalue=5e-81, Organism=Homo sapiens, GI58082049, Length=549, Percent_Identity=32.4225865209472, Blast_Score=278, Evalue=8e-75, Organism=Homo sapiens, GI157311624, Length=549, Percent_Identity=32.2404371584699, Blast_Score=275, Evalue=8e-74, Organism=Homo sapiens, GI157311622, Length=549, Percent_Identity=32.2404371584699, Blast_Score=275, Evalue=8e-74, Organism=Homo sapiens, GI115511026, Length=548, Percent_Identity=30.6569343065693, Blast_Score=248, Evalue=9e-66, Organism=Homo sapiens, GI42544134, Length=383, Percent_Identity=33.6814621409922, Blast_Score=206, Evalue=6e-53, Organism=Homo sapiens, GI195947378, Length=424, Percent_Identity=27.8301886792453, Blast_Score=160, Evalue=2e-39, Organism=Homo sapiens, GI8923896, Length=590, Percent_Identity=27.1186440677966, Blast_Score=135, Evalue=1e-31, Organism=Homo sapiens, GI28416953, Length=585, Percent_Identity=26.3247863247863, Blast_Score=131, Evalue=2e-30, Organism=Homo sapiens, GI13375727, Length=522, Percent_Identity=26.4367816091954, Blast_Score=125, Evalue=2e-28, Organism=Homo sapiens, GI253970489, Length=364, Percent_Identity=29.9450549450549, Blast_Score=113, Evalue=6e-25, Organism=Homo sapiens, GI156151445, Length=548, Percent_Identity=25.1824817518248, Blast_Score=100, Evalue=7e-21, Organism=Homo sapiens, GI187761345, Length=553, Percent_Identity=25.497287522604, Blast_Score=91, Evalue=3e-18, Organism=Homo sapiens, GI187761343, Length=553, Percent_Identity=25.497287522604, Blast_Score=91, Evalue=3e-18, Organism=Homo sapiens, GI40807491, Length=186, Percent_Identity=30.6451612903226, Blast_Score=71, Evalue=3e-12, Organism=Homo sapiens, GI57165410, Length=176, Percent_Identity=32.3863636363636, Blast_Score=70, Evalue=7e-12, Organism=Homo sapiens, GI57165412, Length=176, Percent_Identity=32.3863636363636, Blast_Score=70, Evalue=8e-12, Organism=Escherichia coli, GI1790505, Length=561, Percent_Identity=28.8770053475936, Blast_Score=151, Evalue=1e-37, Organism=Escherichia coli, GI1788107, Length=515, Percent_Identity=25.0485436893204, Blast_Score=126, Evalue=3e-30, Organism=Escherichia coli, GI221142682, Length=511, Percent_Identity=25.440313111546, Blast_Score=119, Evalue=4e-28, Organism=Escherichia coli, GI1786529, Length=522, Percent_Identity=27.7777777777778, Blast_Score=117, Evalue=2e-27, Organism=Escherichia coli, GI1786810, Length=527, Percent_Identity=25.426944971537, Blast_Score=111, Evalue=1e-25, Organism=Escherichia coli, GI145693145, Length=498, Percent_Identity=25.1004016064257, Blast_Score=110, Evalue=3e-25, Organism=Escherichia coli, GI1788595, Length=480, Percent_Identity=21.875, Blast_Score=67, Evalue=2e-12, Organism=Caenorhabditis elegans, GI71982997, Length=536, Percent_Identity=28.544776119403, Blast_Score=123, Evalue=2e-28, Organism=Caenorhabditis elegans, GI71983001, Length=536, Percent_Identity=28.544776119403, Blast_Score=123, Evalue=2e-28, Organism=Caenorhabditis elegans, GI17559526, Length=532, Percent_Identity=24.812030075188, Blast_Score=119, Evalue=3e-27, Organism=Caenorhabditis elegans, GI17558820, Length=520, Percent_Identity=25.9615384615385, Blast_Score=115, Evalue=7e-26, Organism=Caenorhabditis elegans, GI17531443, Length=513, Percent_Identity=22.8070175438596, Blast_Score=105, Evalue=8e-23, Organism=Caenorhabditis elegans, GI32563687, Length=512, Percent_Identity=23.828125, Blast_Score=100, Evalue=4e-21, Organism=Caenorhabditis elegans, GI17538037, Length=538, Percent_Identity=22.4907063197026, Blast_Score=94, Evalue=1e-19, Organism=Caenorhabditis elegans, GI71994694, Length=531, Percent_Identity=23.728813559322, Blast_Score=92, Evalue=6e-19, Organism=Caenorhabditis elegans, GI71994703, Length=531, Percent_Identity=23.728813559322, Blast_Score=92, Evalue=7e-19, Organism=Caenorhabditis elegans, GI71994690, Length=531, Percent_Identity=23.728813559322, Blast_Score=92, Evalue=7e-19, Organism=Caenorhabditis elegans, GI17557194, Length=528, Percent_Identity=22.7272727272727, Blast_Score=91, Evalue=2e-18, Organism=Caenorhabditis elegans, GI71996755, Length=493, Percent_Identity=23.9350912778905, Blast_Score=87, Evalue=2e-17, Organism=Caenorhabditis elegans, GI71985884, Length=358, Percent_Identity=24.8603351955307, Blast_Score=86, Evalue=4e-17, Organism=Caenorhabditis elegans, GI17560140, Length=203, Percent_Identity=29.5566502463054, Blast_Score=79, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17560308, Length=370, Percent_Identity=24.8648648648649, Blast_Score=76, Evalue=4e-14, Organism=Saccharomyces cerevisiae, GI6323182, Length=573, Percent_Identity=26.7015706806283, Blast_Score=139, Evalue=2e-33, Organism=Saccharomyces cerevisiae, GI6319264, Length=586, Percent_Identity=27.6450511945392, Blast_Score=134, Evalue=4e-32, Organism=Saccharomyces cerevisiae, GI6319699, Length=348, Percent_Identity=26.1494252873563, Blast_Score=110, Evalue=4e-25, Organism=Drosophila melanogaster, GI24667955, Length=590, Percent_Identity=27.2881355932203, Blast_Score=153, Evalue=3e-37, Organism=Drosophila melanogaster, GI62472339, Length=532, Percent_Identity=28.0075187969925, Blast_Score=152, Evalue=5e-37, Organism=Drosophila melanogaster, GI21355225, Length=523, Percent_Identity=27.7246653919694, Blast_Score=139, Evalue=8e-33, Organism=Drosophila melanogaster, GI24667959, Length=493, Percent_Identity=27.9918864097363, Blast_Score=134, Evalue=2e-31, Organism=Drosophila melanogaster, GI21355181, Length=505, Percent_Identity=23.960396039604, Blast_Score=120, Evalue=3e-27, Organism=Drosophila melanogaster, GI18859661, Length=523, Percent_Identity=26.3862332695985, Blast_Score=115, Evalue=1e-25, Organism=Drosophila melanogaster, GI19922652, Length=537, Percent_Identity=23.8361266294227, Blast_Score=91, Evalue=2e-18, Organism=Drosophila melanogaster, GI24581924, Length=520, Percent_Identity=24.4230769230769, Blast_Score=89, Evalue=1e-17, Organism=Drosophila melanogaster, GI24656500, Length=500, Percent_Identity=24.8, Blast_Score=83, Evalue=5e-16, Organism=Drosophila melanogaster, GI24648257, Length=364, Percent_Identity=27.1978021978022, Blast_Score=81, Evalue=2e-15, Organism=Drosophila melanogaster, GI24648260, Length=357, Percent_Identity=25.4901960784314, Blast_Score=80, Evalue=4e-15, Organism=Drosophila melanogaster, GI21358303, Length=160, Percent_Identity=31.875, Blast_Score=75, Evalue=1e-13, Organism=Drosophila melanogaster, GI21356947, Length=348, Percent_Identity=25.2873563218391, Blast_Score=74, Evalue=4e-13, Organism=Drosophila melanogaster, GI281365686, Length=348, Percent_Identity=21.8390804597701, Blast_Score=70, Evalue=3e-12, Organism=Drosophila melanogaster, GI24653035, Length=537, Percent_Identity=21.9739292364991, Blast_Score=69, Evalue=7e-12, Organism=Drosophila melanogaster, GI21356441, Length=354, Percent_Identity=24.2937853107345, Blast_Score=65, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020845 - InterPro: IPR000873 [H]
Pfam domain/function: PF00501 AMP-binding [H]
EC number: 6.2.1.1
Molecular weight: Translated: 62172; Mature: 62041
Theoretical pI: Translated: 4.86; Mature: 4.86
Prosite motif: PS00455 AMP_BINDING
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTNTDLYRSARDQLVAVIGDYDKALQSFEWPRLEGAFNWATDWFDVIARDPITADRRAL CCCCHHHHHHHHHHEEEEECCHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEE WIVEEDGREEQITFAQMADRSDRVATWLERRGIGKGDRVILMLGNQVELWEAMLAVAKLG EEECCCCCCHHEEHHHHHCCCHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHC AVIMPTTGALGPADLADRITRGGATAVIANAADTAKFTEVPGDYLRIAVGAPVAGWHTYG EEEECCCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHCCCCCCEEEEECCCCCCHHCCC EAYDTVSAGPFTARTTVDDTMLIYFTSGTTSKPKLVEHSQVSYPVGHLSTMGWIGVRPGD CHHCCCCCCCCEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHCCCEEECCCCC VHLAISSPGWAKHAWSCFFAPWIAEATIFVYNYRRFDAAALLRQLNRAQVNTFCAPPTVW EEEEECCCCCHHHHHHHHHHHHHHCEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCHHHH RMLIQSDLGTKPAGLREILGAGEPLNPDVIAQVEKAWGLTIRDGFGQTETTLQIGNTPGQ HHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCEEECCCCCCEEEEEECCCCCC PVKPGSMGRPMPGVPVVLVDPLTGRPAEEGEICLDLSRQPVNLMTGYLDDPARNAAVTEG CCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEECCCCCHHHHHCCCCCCCCCCEECCC GYYHTGDVAQRDSDGYITYIGRTDDVFKSSDYKVSPFELESVLIEHPAVVEAAVVPQPDD CEEECCCCCCCCCCCEEEEECCCCCHHCCCCCEECCHHHHHHHHCCCCCEEEEECCCCCC TRLSVPKAYVALAEGWQADADTAKSIMEYARDHLAPYLKVRRVEFYELPKTISGKIRRVE CEEECCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCEEEEH LRRREEDSAGRAIPTEYRYEDLVAG HHHCCCCCCCCCCCCCCCHHHHCCC >Mature Secondary Structure STNTDLYRSARDQLVAVIGDYDKALQSFEWPRLEGAFNWATDWFDVIARDPITADRRAL CCCHHHHHHHHHHEEEEECCHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEE WIVEEDGREEQITFAQMADRSDRVATWLERRGIGKGDRVILMLGNQVELWEAMLAVAKLG EEECCCCCCHHEEHHHHHCCCHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHC AVIMPTTGALGPADLADRITRGGATAVIANAADTAKFTEVPGDYLRIAVGAPVAGWHTYG EEEECCCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHCCCCCCEEEEECCCCCCHHCCC EAYDTVSAGPFTARTTVDDTMLIYFTSGTTSKPKLVEHSQVSYPVGHLSTMGWIGVRPGD CHHCCCCCCCCEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHCCCEEECCCCC VHLAISSPGWAKHAWSCFFAPWIAEATIFVYNYRRFDAAALLRQLNRAQVNTFCAPPTVW EEEEECCCCCHHHHHHHHHHHHHHCEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCHHHH RMLIQSDLGTKPAGLREILGAGEPLNPDVIAQVEKAWGLTIRDGFGQTETTLQIGNTPGQ HHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCEEECCCCCCEEEEEECCCCCC PVKPGSMGRPMPGVPVVLVDPLTGRPAEEGEICLDLSRQPVNLMTGYLDDPARNAAVTEG CCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEECCCCCHHHHHCCCCCCCCCCEECCC GYYHTGDVAQRDSDGYITYIGRTDDVFKSSDYKVSPFELESVLIEHPAVVEAAVVPQPDD CEEECCCCCCCCCCCEEEEECCCCCHHCCCCCEECCHHHHHHHHCCCCCEEEEECCCCCC TRLSVPKAYVALAEGWQADADTAKSIMEYARDHLAPYLKVRRVEFYELPKTISGKIRRVE CEEECCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCEEEEH LRRREEDSAGRAIPTEYRYEDLVAG HHHCCCCCCCCCCCCCCCHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; acetate; CoA
Specific reaction: ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA
General reaction: Acid-thiol ligation [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9387221; 9384377 [H]