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The map label for this gene is ydiF [H]

Identifier: 108800975

GI number: 108800975

Start: 4276340

End: 4277953

Strand: Reverse

Name: ydiF [H]

Synonym: Mmcs_4011

Alternate gene names: 108800975

Gene position: 4277953-4276340 (Counterclockwise)

Preceding gene: 108800976

Following gene: 108800972

Centisome position: 74.98

GC content: 70.45

Gene sequence:

>1614_bases
ATGTCATCGATCGTCTGTTCCTCCCTGTCGTTCGCCTGGCCCGACGGCACCACGGTTTTCAGCGAGCTGACCGCCTCTTT
CGGTGACGGCCGCACCGGCCTGGTCGCGCCCAACGGTGCGGGCAAATCCACTCTGCTGCGGCTGATCGCGGGGGAGTTGT
CGCCGTCGGCCGGGACCGTGAGCGTCACCGGGACACTCGGTCACCTCCCGCAGACCCTGCCGCTGGCGGCCGACCTCACC
GTCGCCGACGTGCTCGGTGTCGCTCCGGTGATCGCCGCGCTGAACGCACTCGCCGAAGGTGATGCCGGTGACGACGTGTT
CACGGCCATCGGCGACGACTGGGATGCCGAAGAATGCGCCCGCGCCCAACTGGACCGGTTGGGGCTCGCGCACGTAGCGC
TCGACCGTCGCCTCGAAACGCTGTCCGGCGGCGAGATCGTCTCCGTGGGCCTGGCGGCGAAACTCCTCGAGCGGCCCGAC
GTGCTGCTGCTCGACGAGCCGACTAACAACCTCGATGCCGACGCCAGGAACGCGCTGTACGCCGCGCTCGACGATTTCGC
CGGCACCCTGCTGCTGGTCAGCCACGACCGGGTGCTGCTCGACCGGATGGACCGGATCGCCGAACTGAGCCGTGGCGAAA
TCGTCTTCTACGGCGGCAATTTCACCGCCTACCGGGAGGCGGTGGCAGCCGAGCAGCAGGCCGCCGAAAGCGACCTCCGC
AACGCCGAGCAACAGCTCAAACGCGAGAAGCGTCAGATGCAGGAGGCCCGCGAGCGCGCGGGGCGGCGTTCGAACACCGC
GGTGCGCAACCTCGCCGACGCGGGTCTGCCGAAGATCCTCGCCGGGGCCAGGAAGCGCAGGGCCCAGGAGTCCGCAGGCA
GGGCCGACGACGTACACGCCAGGCGGGTGGGTGACGCCAGGGTTCGGGTCGAGGACGCCGAGCGTTCGCTGCGTGACGAC
GATGCGATCGCGCTCGACCTGCCCGACACCGAGGTGCCCGCCGGCCGCAACCTGTTCGCCGGGCACGGGCTCCGCATCGC
CCGCGGCGGCCGGGAGCTGTTCGCGGACAACGGAATCGACCTCTCGCTCCGGGGGCCGGAGCGGGCCGCCCTCACGGGAC
CGAACGGGGCGGGCAAATCCACGCTGCTGCGGATCATCGCCGGCGCCGTCGAGCCCGACGCGGGTGCCGTGCAGCGCGCC
GACGGCCGAACCGCCTACATCTCCCAGCGGCTGGACCTGCTCGACGACGACCTGTCGGTGGCCGAGAACCTGGCCCGCTT
CGCGCCGGACATGACCGTGACCAGAAGCCGACACCTGTTGGCGCAGTTCCTGTTCCGCGGTGACCGCATCCATCTGCCGG
TGTCGGTGCTCTCGGGCGGCGAGCGGCTGCGGGCGACGCTGGCGTGCGTGCTCTACGGCGAACCTGCGCCGCAGCTGCTC
CTGCTCGACGAGCCGACCAACAACCTCGACCTGGTCAGCGTCGGCCAGCTCGAATCGGCCCTCGATGCCTACCGGGGTGC
GTTCGTGGTGGTGAGCCACGACGAGCGGTTCCTGGCCCAGATCGGCGTGGACCGGTGGCTTCGCCTGGCCGATGGGGTGC
TGGTCGAGAGGTGA

Upstream 100 bases:

>100_bases
CGCTGACTTACCCTCGAAGACATGTGGGGAGACGACGACATCTCCGGGTGATCCGGAAAACCTGCTCGTCCGTACTCGTA
CCCTCCTCGAAAGTCCCCGC

Downstream 100 bases:

>100_bases
GGGTCAGACCTGCTGGGTGGGGGTCGGCGCGTCGGGCCCGCCGTCGCGGTTCTCTTCCACCGGCGCCCTCTCGGACTCGC
CCGCACCGGCGGCGCCCGTC

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 537; Mature: 536

Protein sequence:

>537_residues
MSSIVCSSLSFAWPDGTTVFSELTASFGDGRTGLVAPNGAGKSTLLRLIAGELSPSAGTVSVTGTLGHLPQTLPLAADLT
VADVLGVAPVIAALNALAEGDAGDDVFTAIGDDWDAEECARAQLDRLGLAHVALDRRLETLSGGEIVSVGLAAKLLERPD
VLLLDEPTNNLDADARNALYAALDDFAGTLLLVSHDRVLLDRMDRIAELSRGEIVFYGGNFTAYREAVAAEQQAAESDLR
NAEQQLKREKRQMQEARERAGRRSNTAVRNLADAGLPKILAGARKRRAQESAGRADDVHARRVGDARVRVEDAERSLRDD
DAIALDLPDTEVPAGRNLFAGHGLRIARGGRELFADNGIDLSLRGPERAALTGPNGAGKSTLLRIIAGAVEPDAGAVQRA
DGRTAYISQRLDLLDDDLSVAENLARFAPDMTVTRSRHLLAQFLFRGDRIHLPVSVLSGGERLRATLACVLYGEPAPQLL
LLDEPTNNLDLVSVGQLESALDAYRGAFVVVSHDERFLAQIGVDRWLRLADGVLVER

Sequences:

>Translated_537_residues
MSSIVCSSLSFAWPDGTTVFSELTASFGDGRTGLVAPNGAGKSTLLRLIAGELSPSAGTVSVTGTLGHLPQTLPLAADLT
VADVLGVAPVIAALNALAEGDAGDDVFTAIGDDWDAEECARAQLDRLGLAHVALDRRLETLSGGEIVSVGLAAKLLERPD
VLLLDEPTNNLDADARNALYAALDDFAGTLLLVSHDRVLLDRMDRIAELSRGEIVFYGGNFTAYREAVAAEQQAAESDLR
NAEQQLKREKRQMQEARERAGRRSNTAVRNLADAGLPKILAGARKRRAQESAGRADDVHARRVGDARVRVEDAERSLRDD
DAIALDLPDTEVPAGRNLFAGHGLRIARGGRELFADNGIDLSLRGPERAALTGPNGAGKSTLLRIIAGAVEPDAGAVQRA
DGRTAYISQRLDLLDDDLSVAENLARFAPDMTVTRSRHLLAQFLFRGDRIHLPVSVLSGGERLRATLACVLYGEPAPQLL
LLDEPTNNLDLVSVGQLESALDAYRGAFVVVSHDERFLAQIGVDRWLRLADGVLVER
>Mature_536_residues
SSIVCSSLSFAWPDGTTVFSELTASFGDGRTGLVAPNGAGKSTLLRLIAGELSPSAGTVSVTGTLGHLPQTLPLAADLTV
ADVLGVAPVIAALNALAEGDAGDDVFTAIGDDWDAEECARAQLDRLGLAHVALDRRLETLSGGEIVSVGLAAKLLERPDV
LLLDEPTNNLDADARNALYAALDDFAGTLLLVSHDRVLLDRMDRIAELSRGEIVFYGGNFTAYREAVAAEQQAAESDLRN
AEQQLKREKRQMQEARERAGRRSNTAVRNLADAGLPKILAGARKRRAQESAGRADDVHARRVGDARVRVEDAERSLRDDD
AIALDLPDTEVPAGRNLFAGHGLRIARGGRELFADNGIDLSLRGPERAALTGPNGAGKSTLLRIIAGAVEPDAGAVQRAD
GRTAYISQRLDLLDDDLSVAENLARFAPDMTVTRSRHLLAQFLFRGDRIHLPVSVLSGGERLRATLACVLYGEPAPQLLL
LDEPTNNLDLVSVGQLESALDAYRGAFVVVSHDERFLAQIGVDRWLRLADGVLVER

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI10947137, Length=545, Percent_Identity=26.9724770642202, Blast_Score=150, Evalue=4e-36,
Organism=Homo sapiens, GI27881506, Length=545, Percent_Identity=26.9724770642202, Blast_Score=149, Evalue=4e-36,
Organism=Homo sapiens, GI148612853, Length=530, Percent_Identity=26.4150943396226, Blast_Score=135, Evalue=8e-32,
Organism=Homo sapiens, GI10947135, Length=524, Percent_Identity=28.0534351145038, Blast_Score=126, Evalue=6e-29,
Organism=Homo sapiens, GI69354671, Length=524, Percent_Identity=27.8625954198473, Blast_Score=125, Evalue=7e-29,
Organism=Escherichia coli, GI1787041, Length=525, Percent_Identity=30.2857142857143, Blast_Score=191, Evalue=8e-50,
Organism=Escherichia coli, GI1789751, Length=520, Percent_Identity=33.0769230769231, Blast_Score=189, Evalue=4e-49,
Organism=Escherichia coli, GI2367384, Length=550, Percent_Identity=32.1818181818182, Blast_Score=187, Evalue=2e-48,
Organism=Escherichia coli, GI1787182, Length=527, Percent_Identity=31.8785578747628, Blast_Score=181, Evalue=1e-46,
Organism=Escherichia coli, GI87081782, Length=504, Percent_Identity=25.7936507936508, Blast_Score=111, Evalue=1e-25,
Organism=Escherichia coli, GI1788165, Length=267, Percent_Identity=29.9625468164794, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1789873, Length=206, Percent_Identity=33.0097087378641, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI87081834, Length=237, Percent_Identity=31.2236286919831, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI87081791, Length=220, Percent_Identity=29.5454545454545, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1786703, Length=232, Percent_Identity=32.3275862068966, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1786345, Length=238, Percent_Identity=27.3109243697479, Blast_Score=62, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI17555318, Length=524, Percent_Identity=29.1984732824427, Blast_Score=171, Evalue=8e-43,
Organism=Caenorhabditis elegans, GI17559834, Length=543, Percent_Identity=27.0718232044199, Blast_Score=150, Evalue=2e-36,
Organism=Caenorhabditis elegans, GI17553372, Length=534, Percent_Identity=28.0898876404494, Blast_Score=135, Evalue=7e-32,
Organism=Saccharomyces cerevisiae, GI6320874, Length=525, Percent_Identity=28.1904761904762, Blast_Score=130, Evalue=4e-31,
Organism=Saccharomyces cerevisiae, GI6321121, Length=554, Percent_Identity=26.173285198556, Blast_Score=117, Evalue=4e-27,
Organism=Saccharomyces cerevisiae, GI6324314, Length=182, Percent_Identity=35.1648351648352, Blast_Score=87, Evalue=5e-18,
Organism=Saccharomyces cerevisiae, GI6323278, Length=181, Percent_Identity=34.8066298342541, Blast_Score=84, Evalue=8e-17,
Organism=Saccharomyces cerevisiae, GI6325030, Length=189, Percent_Identity=33.8624338624339, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24642252, Length=516, Percent_Identity=27.906976744186, Blast_Score=163, Evalue=3e-40,
Organism=Drosophila melanogaster, GI18859989, Length=516, Percent_Identity=27.906976744186, Blast_Score=163, Evalue=3e-40,
Organism=Drosophila melanogaster, GI24641342, Length=514, Percent_Identity=29.9610894941634, Blast_Score=162, Evalue=7e-40,
Organism=Drosophila melanogaster, GI24666836, Length=528, Percent_Identity=28.7878787878788, Blast_Score=152, Evalue=6e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 57411; Mature: 57280

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSIVCSSLSFAWPDGTTVFSELTASFGDGRTGLVAPNGAGKSTLLRLIAGELSPSAGTV
CCCCEECCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCEE
SVTGTLGHLPQTLPLAADLTVADVLGVAPVIAALNALAEGDAGDDVFTAIGDDWDAEECA
EEEECHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHEECCCCCCHHHHH
RAQLDRLGLAHVALDRRLETLSGGEIVSVGLAAKLLERPDVLLLDEPTNNLDADARNALY
HHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHH
AALDDFAGTLLLVSHDRVLLDRMDRIAELSRGEIVFYGGNFTAYREAVAAEQQAAESDLR
HHHHHHCCEEEEEECCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHH
NAEQQLKREKRQMQEARERAGRRSNTAVRNLADAGLPKILAGARKRRAQESAGRADDVHA
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHH
RRVGDARVRVEDAERSLRDDDAIALDLPDTEVPAGRNLFAGHGLRIARGGRELFADNGID
HHCCCCEEEEEHHHHCCCCCCEEEEECCCCCCCCCCCEECCCCEEEECCCHHHHCCCCEE
LSLRGPERAALTGPNGAGKSTLLRIIAGAVEPDAGAVQRADGRTAYISQRLDLLDDDLSV
EEECCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHH
AENLARFAPDMTVTRSRHLLAQFLFRGDRIHLPVSVLSGGERLRATLACVLYGEPAPQLL
HHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHCCCHHHEEEEEEEEECCCCCCEE
LLDEPTNNLDLVSVGQLESALDAYRGAFVVVSHDERFLAQIGVDRWLRLADGVLVER
EEECCCCCCCEEEHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHCCHHCCC
>Mature Secondary Structure 
SSIVCSSLSFAWPDGTTVFSELTASFGDGRTGLVAPNGAGKSTLLRLIAGELSPSAGTV
CCCEECCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCEE
SVTGTLGHLPQTLPLAADLTVADVLGVAPVIAALNALAEGDAGDDVFTAIGDDWDAEECA
EEEECHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHEECCCCCCHHHHH
RAQLDRLGLAHVALDRRLETLSGGEIVSVGLAAKLLERPDVLLLDEPTNNLDADARNALY
HHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHH
AALDDFAGTLLLVSHDRVLLDRMDRIAELSRGEIVFYGGNFTAYREAVAAEQQAAESDLR
HHHHHHCCEEEEEECCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHH
NAEQQLKREKRQMQEARERAGRRSNTAVRNLADAGLPKILAGARKRRAQESAGRADDVHA
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHH
RRVGDARVRVEDAERSLRDDDAIALDLPDTEVPAGRNLFAGHGLRIARGGRELFADNGID
HHCCCCEEEEEHHHHCCCCCCEEEEECCCCCCCCCCCEECCCCEEEECCCHHHHCCCCEE
LSLRGPERAALTGPNGAGKSTLLRIIAGAVEPDAGAVQRADGRTAYISQRLDLLDDDLSV
EEECCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHH
AENLARFAPDMTVTRSRHLLAQFLFRGDRIHLPVSVLSGGERLRATLACVLYGEPAPQLL
HHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHCCCHHHEEEEEEEEECCCCCCEE
LLDEPTNNLDLVSVGQLESALDAYRGAFVVVSHDERFLAQIGVDRWLRLADGVLVER
EEECCCCCCCEEEHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]