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The map label for this gene is ykgA [C]

Identifier: 108800916

GI number: 108800916

Start: 4212737

End: 4213525

Strand: Reverse

Name: ykgA [C]

Synonym: Mmcs_3952

Alternate gene names: 108800916

Gene position: 4213525-4212737 (Counterclockwise)

Preceding gene: 108800920

Following gene: 108800913

Centisome position: 73.85

GC content: 72.37

Gene sequence:

>789_bases
GTGGTCGGCCGCGCCGGCAGCGCGTCGGCATATGACCTCAGGCGGTGGGCGCCGTCGCCGCGAGCCGCCGTGTTCGTCGA
ACACTTCTGGTCGGTCAGCTGGGATCTGCGTGGGCGCCCGGCCGTCGACAGCACGGTCATCACGTTCCCGTCGGTCCACC
TCACCCGCGAATGGGGTGAGGACGAGGTGCGCCACGGCCACCGGCTGCCCGCCACCCTGGTGCACGGCGTGGTCGAGCGG
GTCTTTCGCGTGACAGTGCGCGAGCGTGGCGCCGTTGTGGGCGCGCGGTTCCGTCCCGGCGGGTTCGCGGCCCGCTTCGA
CCGCGACGCCTCCGCCTTGACCGGACGCGTCGACCCGATCGACGACGACCTGTTCGGAGGTCCGCTGGCGCTGCCCTGCG
ACGCCCAGCGCGCCGGTGCCGCGCTCGACGACGCCATCGGCGCCGGTTCGGGTGCGCTCGACCCGACCTACCGTGTGCTC
ACGGCGCTGGTCGACCGGATCCGTGACGACGACCGCCTGCAGCGCGTGGAGCACGTGGTGGCCGCGTCGCCGTGGAGCGA
GCGCACGGTGCAGCGGGTGTTCCGCCGCTACGTCGGCGTACCGGTGAAGTGGGTGCTGTGCCGATACCGGTTGCAGCAGG
CGGCGCTGGAGATCGAGAGCACCCCCGACGTCGACTTCGCCGACCTCGCCGCACGCCTCGGCTGGTACGACCAGGCCCAC
TTCACGAACGACTTCCGCGCGATGTTGGGTTGCACGCCAGGCGAATACGCCTCCCGCCACGGCGCCTGA

Upstream 100 bases:

>100_bases
GTGTAGCCCTCCGGAATGGGTGAAACGCTCATGGCTGAAAGCTTTGTAGCCTTGCGGCATGGGGGCTTGGAAAAACCCGC
CAGCGGCTCCGGTGCGCGGA

Downstream 100 bases:

>100_bases
ACACGCCGAAACTGCTGGGGGATCACCGTTTCGCGAGTTTCGGTGATCTCCCAGCAGTTTCGGCGGGGTTTGGTCAGCGG
GTGGTCACGTAGACGACGCG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator; AraC-Family Transcriptional Regulator; Helix-Turn-Helix AraC Domain-Containing Protein; Helix-Turn-Helix Domain-Containing Protein; Regulator; ArsR Family Transcriptional Regulator; AraC Family Transcription Regulator; Helix-Turn-Helix- Domain Containing Protein AraC Type; Helix-Turn-Helix Domain-/AraC Domain-Containing Protein; Helix-Turn-Helix AraC Domain Protein

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MVGRAGSASAYDLRRWAPSPRAAVFVEHFWSVSWDLRGRPAVDSTVITFPSVHLTREWGEDEVRHGHRLPATLVHGVVER
VFRVTVRERGAVVGARFRPGGFAARFDRDASALTGRVDPIDDDLFGGPLALPCDAQRAGAALDDAIGAGSGALDPTYRVL
TALVDRIRDDDRLQRVEHVVAASPWSERTVQRVFRRYVGVPVKWVLCRYRLQQAALEIESTPDVDFADLAARLGWYDQAH
FTNDFRAMLGCTPGEYASRHGA

Sequences:

>Translated_262_residues
MVGRAGSASAYDLRRWAPSPRAAVFVEHFWSVSWDLRGRPAVDSTVITFPSVHLTREWGEDEVRHGHRLPATLVHGVVER
VFRVTVRERGAVVGARFRPGGFAARFDRDASALTGRVDPIDDDLFGGPLALPCDAQRAGAALDDAIGAGSGALDPTYRVL
TALVDRIRDDDRLQRVEHVVAASPWSERTVQRVFRRYVGVPVKWVLCRYRLQQAALEIESTPDVDFADLAARLGWYDQAH
FTNDFRAMLGCTPGEYASRHGA
>Mature_262_residues
MVGRAGSASAYDLRRWAPSPRAAVFVEHFWSVSWDLRGRPAVDSTVITFPSVHLTREWGEDEVRHGHRLPATLVHGVVER
VFRVTVRERGAVVGARFRPGGFAARFDRDASALTGRVDPIDDDLFGGPLALPCDAQRAGAALDDAIGAGSGALDPTYRVL
TALVDRIRDDDRLQRVEHVVAASPWSERTVQRVFRRYVGVPVKWVLCRYRLQQAALEIESTPDVDFADLAARLGWYDQAH
FTNDFRAMLGCTPGEYASRHGA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29049; Mature: 29049

Theoretical pI: Translated: 7.67; Mature: 7.67

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVGRAGSASAYDLRRWAPSPRAAVFVEHFWSVSWDLRGRPAVDSTVITFPSVHLTREWGE
CCCCCCCCCHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCEEEHHCCC
DEVRHGHRLPATLVHGVVERVFRVTVRERGAVVGARFRPGGFAARFDRDASALTGRVDPI
HHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHCCCCHHHHCCCCCCC
DDDLFGGPLALPCDAQRAGAALDDAIGAGSGALDPTYRVLTALVDRIRDDDRLQRVEHVV
CCCCCCCCCCCCCCCHHHCCHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHH
AASPWSERTVQRVFRRYVGVPVKWVLCRYRLQQAALEIESTPDVDFADLAARLGWYDQAH
HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHH
FTNDFRAMLGCTPGEYASRHGA
HHHHHHHHHCCCCCHHHHCCCC
>Mature Secondary Structure
MVGRAGSASAYDLRRWAPSPRAAVFVEHFWSVSWDLRGRPAVDSTVITFPSVHLTREWGE
CCCCCCCCCHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCEEEHHCCC
DEVRHGHRLPATLVHGVVERVFRVTVRERGAVVGARFRPGGFAARFDRDASALTGRVDPI
HHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHCCCCHHHHCCCCCCC
DDDLFGGPLALPCDAQRAGAALDDAIGAGSGALDPTYRVLTALVDRIRDDDRLQRVEHVV
CCCCCCCCCCCCCCCHHHCCHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHH
AASPWSERTVQRVFRRYVGVPVKWVLCRYRLQQAALEIESTPDVDFADLAARLGWYDQAH
HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHH
FTNDFRAMLGCTPGEYASRHGA
HHHHHHHHHCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA