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The map label for this gene is atpFH

Identifier: 108800843

GI number: 108800843

Start: 4132748

End: 4134079

Strand: Reverse

Name: atpFH

Synonym: Mmcs_3879

Alternate gene names: 108800843

Gene position: 4134079-4132748 (Counterclockwise)

Preceding gene: 108800844

Following gene: 108800842

Centisome position: 72.46

GC content: 69.29

Gene sequence:

>1332_bases
ATGTCGACATTCATCGGGCAGCTCATCGGGTTCGCGGTCATCGTGTTCCTGCTCGTGCGTTTCGTGGTGCCGCCGGTGCG
GCGCATGATGACCGCGCAGCAGGAGACGGTGCGCCGTCAGCTCGAGGAGAGCTCGACCGCGGCGAACAAGGTGGCGCAGG
CGGATCAGCAGCACGCCAAGGCGGTCGAAGAGGCCAAGGCCGATGCCAGGCGGGTGGTCGACGAGGCCCGTTCGGACGCG
GAGAAGATCGCCGAGCAGATGCGCGCACAGGCCGACGCCGAAGTCGAGCGCATCAAGGTGCAGGGGCAGGCGCAGGTGCA
ATTGCTGCGCCAGCAGCTGATCCGCGAACTCCGTTCGCACCTCGGCACCGAGTCGGTGGCCCGGGCCCGCGAACTGGTCC
GCGACCACGTCTCCGACGACGACAACCGGTCGGCGACCGTGGACCGCTTCCTCGACGAACTCGACGCCATGGCGCCCTCG
GACGCCGCGCTCGACGACGCCGTGGGATCCCGGATGCGCTCGACCAGCCGGGAGTCACTCAAGGCGCTGGTGTCGCGGTT
CGACGAGCTGACCGCCGACGTCGACGCCGACGGTCTGACCTCACTCGGTGACGAGCTCGCCGCCGTGGCGAAGCTGCTCA
AGACCGAACCGGTCCTGGGCAAGCACTTCGGTGAACCCACCGAGGACGGCGAGGGTAAGGCGAACCTCGCGGAGGCGGTG
CTGTCGGGCAAGATCTCCGACACCGCGCTCGAGGTCGTCAAAGCCGCAGTGGCCCAACGGTGGTCAGACGAATCCGATCT
GGACTACGCGGTCCGGCACACCGCGCGGCTGGCACTGCTGGTGCGTGCGGAGCGCAACGACGAGACCAGTGAGGTCGAGG
ACCAGCTGTTCCGGTTCAGCCGGATCCTGGACTCCGAGTCGCGGCTGAGCGGGGTGCTCAGCGACTACACCACTCCCGTC
GACGGCCGGATCGGACTGCTGGACCGGCTGCTCGGCGACCAGGCAGGCGAGACCACCAGGGCGCTGTTGGCCCAAACGGT
CGAGCTCCTGCGCGGCGAACGCGCCGACGAGGCGGTTCGCGAACTGGCCGAGCTCGCGGTGGCGCGGCGCGGCGAGGTCG
TGGCGCACGTCAACGCCGCGGCGGAGCTCAGCGATGCACAGCGCACCCGGCTCGCCGAGGTGCTCGGCCGGATCTACGGT
CGCCCGGCATCCCTGCAGCTGCACATCGATCCCGACATGCTCGGCGGCCTCACCATCGCCGTGGGCGACGAGGTGATCGA
CGGGTCACTGGCTTCGCGGCTGGCTTCGGCTGAAACCCAGCTGCCCGACTAA

Upstream 100 bases:

>100_bases
ACTGCAGTCGTCGATCGAGACGTTGTCGGCCACCCTGGCCAGCCGCGTTCTCGGGGTCGACATCTCCAGCGCCGCCGCGA
CGAGCCAGGGACGGTAGCGC

Downstream 100 bases:

>100_bases
CTCCGAACCCCACCAGACTCAACACAAAGGCAGGAAGACGAACCCATGGCAGAGTTGACTATCTCGGCTGCTGACATCCA
AGGGGCGATCGAGGACTACG

Product: F0F1 ATP synthase subunit delta

Products: ADP; phosphate; H+

Alternate protein names: ATP synthase subunit b; ATP synthase F(0) sector subunit b 2; ATPase subunit I 2; F-type ATPase subunit b 2; F-ATPase subunit b 2; ATP synthase subunit delta; ATP synthase F(1) sector subunit delta; F-type ATPase subunit delta; F-ATPase subunit delta

Number of amino acids: Translated: 443; Mature: 442

Protein sequence:

>443_residues
MSTFIGQLIGFAVIVFLLVRFVVPPVRRMMTAQQETVRRQLEESSTAANKVAQADQQHAKAVEEAKADARRVVDEARSDA
EKIAEQMRAQADAEVERIKVQGQAQVQLLRQQLIRELRSHLGTESVARARELVRDHVSDDDNRSATVDRFLDELDAMAPS
DAALDDAVGSRMRSTSRESLKALVSRFDELTADVDADGLTSLGDELAAVAKLLKTEPVLGKHFGEPTEDGEGKANLAEAV
LSGKISDTALEVVKAAVAQRWSDESDLDYAVRHTARLALLVRAERNDETSEVEDQLFRFSRILDSESRLSGVLSDYTTPV
DGRIGLLDRLLGDQAGETTRALLAQTVELLRGERADEAVRELAELAVARRGEVVAHVNAAAELSDAQRTRLAEVLGRIYG
RPASLQLHIDPDMLGGLTIAVGDEVIDGSLASRLASAETQLPD

Sequences:

>Translated_443_residues
MSTFIGQLIGFAVIVFLLVRFVVPPVRRMMTAQQETVRRQLEESSTAANKVAQADQQHAKAVEEAKADARRVVDEARSDA
EKIAEQMRAQADAEVERIKVQGQAQVQLLRQQLIRELRSHLGTESVARARELVRDHVSDDDNRSATVDRFLDELDAMAPS
DAALDDAVGSRMRSTSRESLKALVSRFDELTADVDADGLTSLGDELAAVAKLLKTEPVLGKHFGEPTEDGEGKANLAEAV
LSGKISDTALEVVKAAVAQRWSDESDLDYAVRHTARLALLVRAERNDETSEVEDQLFRFSRILDSESRLSGVLSDYTTPV
DGRIGLLDRLLGDQAGETTRALLAQTVELLRGERADEAVRELAELAVARRGEVVAHVNAAAELSDAQRTRLAEVLGRIYG
RPASLQLHIDPDMLGGLTIAVGDEVIDGSLASRLASAETQLPD
>Mature_442_residues
STFIGQLIGFAVIVFLLVRFVVPPVRRMMTAQQETVRRQLEESSTAANKVAQADQQHAKAVEEAKADARRVVDEARSDAE
KIAEQMRAQADAEVERIKVQGQAQVQLLRQQLIRELRSHLGTESVARARELVRDHVSDDDNRSATVDRFLDELDAMAPSD
AALDDAVGSRMRSTSRESLKALVSRFDELTADVDADGLTSLGDELAAVAKLLKTEPVLGKHFGEPTEDGEGKANLAEAVL
SGKISDTALEVVKAAVAQRWSDESDLDYAVRHTARLALLVRAERNDETSEVEDQLFRFSRILDSESRLSGVLSDYTTPVD
GRIGLLDRLLGDQAGETTRALLAQTVELLRGERADEAVRELAELAVARRGEVVAHVNAAAELSDAQRTRLAEVLGRIYGR
PASLQLHIDPDMLGGLTIAVGDEVIDGSLASRLASAETQLPD

Specific function: This fusion protein includes a component of the F(0) channel (subunit b) and of the F(1) subunit (subunit delta). Two copies of subunit b and one of delta together form the peripheral "stator" stalk which links F(1) to F(0)

COG id: COG0711

COG function: function code C; F0F1-type ATP synthase, subunit b

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the ATPase delta chain family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ATPFD_MYCSJ (A3Q3B4)

Other databases:

- EMBL:   CP000580
- RefSeq:   YP_001072132.1
- ProteinModelPortal:   A3Q3B4
- SMR:   A3Q3B4
- STRING:   A3Q3B4
- EnsemblBacteria:   EBMYCT00000053054
- GeneID:   4879575
- GenomeReviews:   CP000580_GR
- KEGG:   mjl:Mjls_3865
- eggNOG:   COG0711
- GeneTree:   EBGT00050000016867
- HOGENOM:   HBG566588
- OMA:   YVVPPVR
- ProtClustDB:   PRK13428
- BioCyc:   MSP164757:MJLS_3865-MONOMER
- HAMAP:   MF_01398
- HAMAP:   MF_01416
- InterPro:   IPR002146
- InterPro:   IPR005864
- InterPro:   IPR000711
- PANTHER:   PTHR11910
- PRINTS:   PR00125
- TIGRFAMs:   TIGR01144
- TIGRFAMs:   TIGR01145

Pfam domain/function: PF00430 ATP-synt_B; PF00213 OSCP

EC number: 3.6.3.14

Molecular weight: Translated: 48271; Mature: 48140

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: PS00389 ATPASE_DELTA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x15876160)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTFIGQLIGFAVIVFLLVRFVVPPVRRMMTAQQETVRRQLEESSTAANKVAQADQQHAK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVEEAKADARRVVDEARSDAEKIAEQMRAQADAEVERIKVQGQAQVQLLRQQLIRELRSH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
LGTESVARARELVRDHVSDDDNRSATVDRFLDELDAMAPSDAALDDAVGSRMRSTSRESL
HCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
KALVSRFDELTADVDADGLTSLGDELAAVAKLLKTEPVLGKHFGEPTEDGEGKANLAEAV
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCHHHHHHHH
LSGKISDTALEVVKAAVAQRWSDESDLDYAVRHTARLALLVRAERNDETSEVEDQLFRFS
HHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
RILDSESRLSGVLSDYTTPVDGRIGLLDRLLGDQAGETTRALLAQTVELLRGERADEAVR
HHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHH
ELAELAVARRGEVVAHVNAAAELSDAQRTRLAEVLGRIYGRPASLQLHIDPDMLGGLTIA
HHHHHHHHHCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHCCEEEE
VGDEVIDGSLASRLASAETQLPD
ECCHHHHHHHHHHHHHHHCCCCH
>Mature Secondary Structure 
STFIGQLIGFAVIVFLLVRFVVPPVRRMMTAQQETVRRQLEESSTAANKVAQADQQHAK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVEEAKADARRVVDEARSDAEKIAEQMRAQADAEVERIKVQGQAQVQLLRQQLIRELRSH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
LGTESVARARELVRDHVSDDDNRSATVDRFLDELDAMAPSDAALDDAVGSRMRSTSRESL
HCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
KALVSRFDELTADVDADGLTSLGDELAAVAKLLKTEPVLGKHFGEPTEDGEGKANLAEAV
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCHHHHHHHH
LSGKISDTALEVVKAAVAQRWSDESDLDYAVRHTARLALLVRAERNDETSEVEDQLFRFS
HHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
RILDSESRLSGVLSDYTTPVDGRIGLLDRLLGDQAGETTRALLAQTVELLRGERADEAVR
HHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHH
ELAELAVARRGEVVAHVNAAAELSDAQRTRLAEVLGRIYGRPASLQLHIDPDMLGGLTIA
HHHHHHHHHCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHCCEEEE
VGDEVIDGSLASRLASAETQLPD
ECCHHHHHHHHHHHHHHHCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: Borate; diphosphate; HCO3- [C]

Metal ions: Co2+; Fe2+; Mn2+; Zn2+ [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; H+

Specific reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out)

General reaction: Phosphorous acid anhydride hydrolysis [C]

Inhibitor: Ca2+; CN-; Efrapeptin; Ethidiumbromide; Guanidines analogs; Oligomycin; Quercetin; Trialkyl tin derivatives; Venturicidin [C]

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA