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The map label for this gene is yfdE [H]

Identifier: 108800787

GI number: 108800787

Start: 4068714

End: 4069784

Strand: Reverse

Name: yfdE [H]

Synonym: Mmcs_3823

Alternate gene names: 108800787

Gene position: 4069784-4068714 (Counterclockwise)

Preceding gene: 108800788

Following gene: 108800785

Centisome position: 71.33

GC content: 69.0

Gene sequence:

>1071_bases
TTGCGCGAAGAGCCGAGGCTCCCGGTGAACGGCCCGCTGGCCGGCATCCGGATCCTCGAGGTCGGTGTCATGCTGGCCGG
CCCGTACGCGACGATGATGCTCGCGGACCTGGGTGCCGAGGTGACGAAGGTCGAGCCGCCCGGCGGTGAGATTTCGCGCC
AGGTCAGCGACAGCTACTTCGCCAGCCTCAACCGCAACAAGCGCAGCGTCTGTCTGGATCTGCAGTCCGCCGACGGCCAA
CGACGTCTGGGCGAGTTGGTCGCGGAATCGCATGCGCTGCTGGTGAACATGAAACCGTCGGTGATCCGCCGCCTCGGTTT
GACCTACGAGGCGCTGCGCAAGCACAACGAGAAGATCGTGTGCGTGGCGATGACGGGGTTCGGGTTGGACGGCGGGGACG
ATCCGGCGTTCGACTATGTGATCCAGGCGGCCACCGGCGTCGCGGCGATGACCGGCGAGCCCGACGGCCCCCCGACGCTC
CCCGGCTATTCGTCGGCCGACAACTCGACCGGGCTGACCGCCGCCCTCGGTCTGCTCGCGATGATCGTCTCCGGTCGCGG
CGGACAGGTCGACGTCTCCCTGCGCGATGTGATGCTCTCGCAGCTGAACTACCGGGCGGCGGCATACCTGAACGACGGGG
TGGCGCCGCGTCGCCATCCCAACGGCGCGCATTCGTTCTACGTTCCGGCGCAACTGTTCCCGACCGCCGACGGCTATCTG
GCGCTGTTCATCACCCACGACGGGTTCTGGCGGCTGTTCGCGTCCGAGGCCGGGATCGAGGGTTACCCCACCATGGCCGA
ACGGGCAGCGCAGCGTGAGGAGGTGCTCGCCGTCGTCACCGAGGCGCTCGCGAAGGACACCGCGAAGGGATGGGAGGCGC
GCCTGCGCCCCCTCGGCATCCCGGCCGCGGCCGTTCGCGGGTTACCCGACGCGCTCGACGAGACACCGGAGGCACTCGTG
ACCGCCGGTGACTTCCGGTTGGTCGGCAGCCCCATCCGCATCGCCGGTTACCGACCCGATTACCGCCCGCCGCCACAACT
TCCGGAGGCGGCCACCGGTCAGTCGTCGTAG

Upstream 100 bases:

>100_bases
GCGCTTGCGCGAAGAGCCGAGGGTCCCGATGAGCGCTTGCGCGAAGAGCCGAGGCTCCCGATGAGCGCTTGCGCGAAGAG
CCGAGGGTCCCGATGAGCGC

Downstream 100 bases:

>100_bases
GTGACCGACACTCTGGCGGTGTCCGGAACCGCCTGGCAGGTCAGCACGTATCCGTCCGCCACCTCGTCGTCGTCGAGCGC
GTCGTTGACCCGCATGGTGG

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 356; Mature: 356

Protein sequence:

>356_residues
MREEPRLPVNGPLAGIRILEVGVMLAGPYATMMLADLGAEVTKVEPPGGEISRQVSDSYFASLNRNKRSVCLDLQSADGQ
RRLGELVAESHALLVNMKPSVIRRLGLTYEALRKHNEKIVCVAMTGFGLDGGDDPAFDYVIQAATGVAAMTGEPDGPPTL
PGYSSADNSTGLTAALGLLAMIVSGRGGQVDVSLRDVMLSQLNYRAAAYLNDGVAPRRHPNGAHSFYVPAQLFPTADGYL
ALFITHDGFWRLFASEAGIEGYPTMAERAAQREEVLAVVTEALAKDTAKGWEARLRPLGIPAAAVRGLPDALDETPEALV
TAGDFRLVGSPIRIAGYRPDYRPPPQLPEAATGQSS

Sequences:

>Translated_356_residues
MREEPRLPVNGPLAGIRILEVGVMLAGPYATMMLADLGAEVTKVEPPGGEISRQVSDSYFASLNRNKRSVCLDLQSADGQ
RRLGELVAESHALLVNMKPSVIRRLGLTYEALRKHNEKIVCVAMTGFGLDGGDDPAFDYVIQAATGVAAMTGEPDGPPTL
PGYSSADNSTGLTAALGLLAMIVSGRGGQVDVSLRDVMLSQLNYRAAAYLNDGVAPRRHPNGAHSFYVPAQLFPTADGYL
ALFITHDGFWRLFASEAGIEGYPTMAERAAQREEVLAVVTEALAKDTAKGWEARLRPLGIPAAAVRGLPDALDETPEALV
TAGDFRLVGSPIRIAGYRPDYRPPPQLPEAATGQSS
>Mature_356_residues
MREEPRLPVNGPLAGIRILEVGVMLAGPYATMMLADLGAEVTKVEPPGGEISRQVSDSYFASLNRNKRSVCLDLQSADGQ
RRLGELVAESHALLVNMKPSVIRRLGLTYEALRKHNEKIVCVAMTGFGLDGGDDPAFDYVIQAATGVAAMTGEPDGPPTL
PGYSSADNSTGLTAALGLLAMIVSGRGGQVDVSLRDVMLSQLNYRAAAYLNDGVAPRRHPNGAHSFYVPAQLFPTADGYL
ALFITHDGFWRLFASEAGIEGYPTMAERAAQREEVLAVVTEALAKDTAKGWEARLRPLGIPAAAVRGLPDALDETPEALV
TAGDFRLVGSPIRIAGYRPDYRPPPQLPEAATGQSS

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=375, Percent_Identity=29.6, Blast_Score=150, Evalue=2e-36,
Organism=Homo sapiens, GI300863124, Length=331, Percent_Identity=30.2114803625378, Blast_Score=144, Evalue=2e-34,
Organism=Homo sapiens, GI13376042, Length=331, Percent_Identity=27.7945619335347, Blast_Score=116, Evalue=3e-26,
Organism=Homo sapiens, GI300863126, Length=371, Percent_Identity=26.1455525606469, Blast_Score=111, Evalue=1e-24,
Organism=Homo sapiens, GI266456254, Length=315, Percent_Identity=27.9365079365079, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI42794625, Length=315, Percent_Identity=27.9365079365079, Blast_Score=78, Evalue=2e-14,
Organism=Homo sapiens, GI266458393, Length=297, Percent_Identity=28.6195286195286, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI266458397, Length=276, Percent_Identity=28.6231884057971, Blast_Score=75, Evalue=8e-14,
Organism=Homo sapiens, GI42822893, Length=121, Percent_Identity=34.7107438016529, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI266458395, Length=121, Percent_Identity=34.7107438016529, Blast_Score=66, Evalue=4e-11,
Organism=Escherichia coli, GI87082093, Length=368, Percent_Identity=29.0760869565217, Blast_Score=156, Evalue=2e-39,
Organism=Escherichia coli, GI1788717, Length=396, Percent_Identity=26.7676767676768, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1786222, Length=245, Percent_Identity=31.0204081632653, Blast_Score=108, Evalue=5e-25,
Organism=Caenorhabditis elegans, GI32564160, Length=193, Percent_Identity=27.4611398963731, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24648431, Length=365, Percent_Identity=35.0684931506849, Blast_Score=179, Evalue=3e-45,
Organism=Drosophila melanogaster, GI24585488, Length=190, Percent_Identity=31.5789473684211, Blast_Score=82, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 37896; Mature: 37896

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MREEPRLPVNGPLAGIRILEVGVMLAGPYATMMLADLGAEVTKVEPPGGEISRQVSDSYF
CCCCCCCCCCCCHHHEEEEEEHHHHCCHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHH
ASLNRNKRSVCLDLQSADGQRRLGELVAESHALLVNMKPSVIRRLGLTYEALRKHNEKIV
HHHCCCCCEEEEEECCCCCHHHHHHHHHCCCEEEEECCHHHHHHHCCCHHHHHHCCCEEE
CVAMTGFGLDGGDDPAFDYVIQAATGVAAMTGEPDGPPTLPGYSSADNSTGLTAALGLLA
EEEEECCCCCCCCCHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
MIVSGRGGQVDVSLRDVMLSQLNYRAAAYLNDGVAPRRHPNGAHSFYVPAQLFPTADGYL
HHHCCCCCEEEHHHHHHHHHHHCHHHEEEECCCCCCCCCCCCCCEEEECCEECCCCCCEE
ALFITHDGFWRLFASEAGIEGYPTMAERAAQREEVLAVVTEALAKDTAKGWEARLRPLGI
EEEEECCCCEEEHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PAAAVRGLPDALDETPEALVTAGDFRLVGSPIRIAGYRPDYRPPPQLPEAATGQSS
CHHHHCCCCHHHHCCCHHHEECCCEEEECCCEEEECCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MREEPRLPVNGPLAGIRILEVGVMLAGPYATMMLADLGAEVTKVEPPGGEISRQVSDSYF
CCCCCCCCCCCCHHHEEEEEEHHHHCCHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHH
ASLNRNKRSVCLDLQSADGQRRLGELVAESHALLVNMKPSVIRRLGLTYEALRKHNEKIV
HHHCCCCCEEEEEECCCCCHHHHHHHHHCCCEEEEECCHHHHHHHCCCHHHHHHCCCEEE
CVAMTGFGLDGGDDPAFDYVIQAATGVAAMTGEPDGPPTLPGYSSADNSTGLTAALGLLA
EEEEECCCCCCCCCHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
MIVSGRGGQVDVSLRDVMLSQLNYRAAAYLNDGVAPRRHPNGAHSFYVPAQLFPTADGYL
HHHCCCCCEEEHHHHHHHHHHHCHHHEEEECCCCCCCCCCCCCCEEEECCEECCCCCCEE
ALFITHDGFWRLFASEAGIEGYPTMAERAAQREEVLAVVTEALAKDTAKGWEARLRPLGI
EEEEECCCCEEEHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PAAAVRGLPDALDETPEALVTAGDFRLVGSPIRIAGYRPDYRPPPQLPEAATGQSS
CHHHHCCCCHHHHCCCHHHEECCCEEEECCCEEEECCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]