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The map label for this gene is yqxC [H]

Identifier: 108799917

GI number: 108799917

Start: 3110210

End: 3111019

Strand: Reverse

Name: yqxC [H]

Synonym: Mmcs_2951

Alternate gene names: 108799917

Gene position: 3111019-3110210 (Counterclockwise)

Preceding gene: 108799918

Following gene: 108799916

Centisome position: 54.53

GC content: 70.86

Gene sequence:

>810_bases
GTGACGCGGCGCGCACGGGTCGACGCCGAGTTGGTGCGACGAGGGTTGGCCCGGTCGCGTCAGCAGGCCGCCGAGCTCAT
CGGCGCAGGCCGGGTGACCGTCGACGGTATGCCGGCGGCCAAACCGGCGACCGCGGTGGCCGTCACCGCCCATATCGCCG
TCGACACCGCGGACGAACGGTCGTGGGTGTCGCGAGGCGCGCACAAACTCATCGGCGCCCTCGACGCCTTCGACATCGAC
GTCGCGGATCGGCGCGGACTCGATGCCGGGGCGTCGACCGGGGGTTTCACCGAGGTCCTGCTCGACCGCGGCGCCCGCGA
AGTCGTGGCCGTCGACGTCGGATATGGCCAACTGGCGTGGTCGCTGCGCTCGGATGAGCGGGTGGTGGTCGTCGAACGCA
CCAACGTGCGCGAACTCACCCCGGAGATGATCGGCGGTCCTGTCGACCTCGTCGTGGCGGACCTGTCGTTCATCTCCCTG
GCGACGGTTCTGCCCGCGCTGACCGCATGCGCGTCGCCCGACGCCGATATCGTTCCCATGGTGAAGCCGCAGTTCGAGGT
CGGTAAGGACCGGGTTGGCGCCGGTGGCGTCGTCTCGGAACCCGAATTGCGTGCGGAATCGGTGCTGTCCGTGGCCGCCA
AGGCCGCCGGGCTCGGCTGGGAGACGGTCGGTGCGACGGCGAGCCCGCTGCCGGGCCCGTCGGGCAACGTCGAGTACTTC
TTGTGGTTACGCGCCCGCACGGACCGCGGACTGCGCGGCGACGATCTCGAGCAGGCGGTGCGGCGCGCCGTCACGGAAGG
ACCGCAATGA

Upstream 100 bases:

>100_bases
CCTCGCCGACTGCGATATCGACACCGTCGCCGCGCGCTTGGAGGAGGCGCACGATCTGCTCGTGCAGGCGCTGGCGGCGG
TCGAGAAGGGCTGAGCGCTC

Downstream 100 bases:

>100_bases
CGTCTGAACGCACCATCCTGCTGGTGGTTCACACGGGACGCGAGGATGCCACCGATGTCGCCCGACGGGTGCAGAAGATG
TTGGGCGACAACGATATCGG

Product: hemolysin A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 268

Protein sequence:

>269_residues
MTRRARVDAELVRRGLARSRQQAAELIGAGRVTVDGMPAAKPATAVAVTAHIAVDTADERSWVSRGAHKLIGALDAFDID
VADRRGLDAGASTGGFTEVLLDRGAREVVAVDVGYGQLAWSLRSDERVVVVERTNVRELTPEMIGGPVDLVVADLSFISL
ATVLPALTACASPDADIVPMVKPQFEVGKDRVGAGGVVSEPELRAESVLSVAAKAAGLGWETVGATASPLPGPSGNVEYF
LWLRARTDRGLRGDDLEQAVRRAVTEGPQ

Sequences:

>Translated_269_residues
MTRRARVDAELVRRGLARSRQQAAELIGAGRVTVDGMPAAKPATAVAVTAHIAVDTADERSWVSRGAHKLIGALDAFDID
VADRRGLDAGASTGGFTEVLLDRGAREVVAVDVGYGQLAWSLRSDERVVVVERTNVRELTPEMIGGPVDLVVADLSFISL
ATVLPALTACASPDADIVPMVKPQFEVGKDRVGAGGVVSEPELRAESVLSVAAKAAGLGWETVGATASPLPGPSGNVEYF
LWLRARTDRGLRGDDLEQAVRRAVTEGPQ
>Mature_268_residues
TRRARVDAELVRRGLARSRQQAAELIGAGRVTVDGMPAAKPATAVAVTAHIAVDTADERSWVSRGAHKLIGALDAFDIDV
ADRRGLDAGASTGGFTEVLLDRGAREVVAVDVGYGQLAWSLRSDERVVVVERTNVRELTPEMIGGPVDLVVADLSFISLA
TVLPALTACASPDADIVPMVKPQFEVGKDRVGAGGVVSEPELRAESVLSVAAKAAGLGWETVGATASPLPGPSGNVEYFL
WLRARTDRGLRGDDLEQAVRRAVTEGPQ

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 28282; Mature: 28151

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRRARVDAELVRRGLARSRQQAAELIGAGRVTVDGMPAAKPATAVAVTAHIAVDTADER
CCCCHHCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEEEEEEECCHHH
SWVSRGAHKLIGALDAFDIDVADRRGLDAGASTGGFTEVLLDRGAREVVAVDVGYGQLAW
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCCCEEE
SLRSDERVVVVERTNVRELTPEMIGGPVDLVVADLSFISLATVLPALTACASPDADIVPM
EECCCCEEEEEECCCCHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECC
VKPQFEVGKDRVGAGGVVSEPELRAESVLSVAAKAAGLGWETVGATASPLPGPSGNVEYF
CCCCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCEEEE
LWLRARTDRGLRGDDLEQAVRRAVTEGPQ
EEEEECCCCCCCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure 
TRRARVDAELVRRGLARSRQQAAELIGAGRVTVDGMPAAKPATAVAVTAHIAVDTADER
CCCHHCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEEEEEEECCHHH
SWVSRGAHKLIGALDAFDIDVADRRGLDAGASTGGFTEVLLDRGAREVVAVDVGYGQLAW
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCCCEEE
SLRSDERVVVVERTNVRELTPEMIGGPVDLVVADLSFISLATVLPALTACASPDADIVPM
EECCCCEEEEEECCCCHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECC
VKPQFEVGKDRVGAGGVVSEPELRAESVLSVAAKAAGLGWETVGATASPLPGPSGNVEYF
CCCCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCEEEE
LWLRARTDRGLRGDDLEQAVRRAVTEGPQ
EEEEECCCCCCCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]