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The map label for this gene is fni [H]

Identifier: 108798922

GI number: 108798922

Start: 2101724

End: 2102770

Strand: Reverse

Name: fni [H]

Synonym: Mmcs_1954

Alternate gene names: 108798922

Gene position: 2102770-2101724 (Counterclockwise)

Preceding gene: 108798929

Following gene: 108798907

Centisome position: 36.86

GC content: 72.68

Gene sequence:

>1047_bases
GTGACGGTGCGGCCTCACACCACCCGAAGTGGCAGCGGTATCGGTATGGAGACCCGCAAACGCCGCCACATCGACGTGTG
CCTGGGCGGGCCGGTGGAGTACCAGACCGTCACCACCGGGCTGGAACGCTACCGGCTGCCGTACAACGCGCTGACCCAGA
CGTCGCTGAGCCGTGTGCGGCTCGACACCCGGTTCCTCGGTAAGCCGCTGTCGGCGCCGGTGCTGATCGGCGCGATGACG
GGGGGCGCCGAGTTGTCCGGTGTCATCAACCGCAACCTCGCCGCCGCCGCACAGCGACTCGGTGTGGGCATGATGCTCGG
CTCCCAGCGGATCATGTTCGACAACGACGCGGTGGCGTCGAGCTTCGCGGTCCGCGACATCGCCCCGGATGTGCTGCTGA
TCGGCAATGTGGGCCTCGCGCAGCTGTCCGAACCCGTGATGCCCGCGCTGGAGCGGGCGCTCGAACGGGTGGGCGCCGAC
GCGCTCGCGGTGCACACCAACCCCCTGCAGGAGGCCATGCAGCGCGACGGGGACACCGACTTCACCGGGTCGATCGACCG
GCTGCGCACGCTCGCCGCCACCCTGCGGCAGCCGGTGATGCTCAAGGAGGTCGGGCACGGGATCGGTGCGGCCGCCGCCG
CCGAACTGGCGGGCAGCGCGCTGGCCGCCGTCGACGTCGCCGGGGCCGGCGGCACCTCGTGGGCGCGGGTCGAACAGCTC
GTCCGCTACGGCGAGATCCGCTCCCCCGCGCTGGCCGAGTGGGGTATCCCCACCGCACAGGCGTTGCTCGAGGTGCGCGG
CACCCTGCCGGACGTGGCGGTGGTGGCCTCCGGCGGGATCCGCACCGGGATGGACGCGGCGAAGGCACTGGCGATGGGCG
CCGATGTGGTCGCCGTCGCCCGTCCGCTGCTCGCACCCGCCATCGAATCGGCCGACGCGGTCGTGGAGTGGCTGCGGGGG
TTCATCGACGAACTGCGGGTGTGCCTGCACGGCTGCGGGGCGGCGGATCTGCCCGCGCTGCGACGCGGCGGCGTCCTGCC
CGCCTGA

Upstream 100 bases:

>100_bases
GAGAAGAACGGCGATGACCGCGATTGCGATCCACACAGCCAGCGAGAGATCCAGGGTCACCCGGCCATTGTTCCAGGGTG
GGTCTCAGGGTGGGTAACCG

Downstream 100 bases:

>100_bases
GGCCGTCGAACGTGCGGCCACTGCGAGATCTCCGCCGATTCTTCGCACTCAGCGCACGCTCGGCGAAGCCTAGGACTGCG
TGCCGACCAGTTCCTGGCCG

Product: isopentenyl pyrophosphate isomerase

Products: NA

Alternate protein names: IPP isomerase; Isopentenyl pyrophosphate isomerase [H]

Number of amino acids: Translated: 348; Mature: 347

Protein sequence:

>348_residues
MTVRPHTTRSGSGIGMETRKRRHIDVCLGGPVEYQTVTTGLERYRLPYNALTQTSLSRVRLDTRFLGKPLSAPVLIGAMT
GGAELSGVINRNLAAAAQRLGVGMMLGSQRIMFDNDAVASSFAVRDIAPDVLLIGNVGLAQLSEPVMPALERALERVGAD
ALAVHTNPLQEAMQRDGDTDFTGSIDRLRTLAATLRQPVMLKEVGHGIGAAAAAELAGSALAAVDVAGAGGTSWARVEQL
VRYGEIRSPALAEWGIPTAQALLEVRGTLPDVAVVASGGIRTGMDAAKALAMGADVVAVARPLLAPAIESADAVVEWLRG
FIDELRVCLHGCGAADLPALRRGGVLPA

Sequences:

>Translated_348_residues
MTVRPHTTRSGSGIGMETRKRRHIDVCLGGPVEYQTVTTGLERYRLPYNALTQTSLSRVRLDTRFLGKPLSAPVLIGAMT
GGAELSGVINRNLAAAAQRLGVGMMLGSQRIMFDNDAVASSFAVRDIAPDVLLIGNVGLAQLSEPVMPALERALERVGAD
ALAVHTNPLQEAMQRDGDTDFTGSIDRLRTLAATLRQPVMLKEVGHGIGAAAAAELAGSALAAVDVAGAGGTSWARVEQL
VRYGEIRSPALAEWGIPTAQALLEVRGTLPDVAVVASGGIRTGMDAAKALAMGADVVAVARPLLAPAIESADAVVEWLRG
FIDELRVCLHGCGAADLPALRRGGVLPA
>Mature_347_residues
TVRPHTTRSGSGIGMETRKRRHIDVCLGGPVEYQTVTTGLERYRLPYNALTQTSLSRVRLDTRFLGKPLSAPVLIGAMTG
GAELSGVINRNLAAAAQRLGVGMMLGSQRIMFDNDAVASSFAVRDIAPDVLLIGNVGLAQLSEPVMPALERALERVGADA
LAVHTNPLQEAMQRDGDTDFTGSIDRLRTLAATLRQPVMLKEVGHGIGAAAAAELAGSALAAVDVAGAGGTSWARVEQLV
RYGEIRSPALAEWGIPTAQALLEVRGTLPDVAVVASGGIRTGMDAAKALAMGADVVAVARPLLAPAIESADAVVEWLRGF
IDELRVCLHGCGAADLPALRRGGVLPA

Specific function: Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP) [H]

COG id: COG1304

COG function: function code C; L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IPP isomerase type 2 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000262
- InterPro:   IPR011179 [H]

Pfam domain/function: PF01070 FMN_dh [H]

EC number: =5.3.3.2 [H]

Molecular weight: Translated: 36303; Mature: 36172

Theoretical pI: Translated: 7.05; Mature: 7.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVRPHTTRSGSGIGMETRKRRHIDVCLGGPVEYQTVTTGLERYRLPYNALTQTSLSRVR
CCCCCCCCCCCCCCCCCHHCCCCEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
LDTRFLGKPLSAPVLIGAMTGGAELSGVINRNLAAAAQRLGVGMMLGSQRIMFDNDAVAS
HHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCHHEECCCEEEECCCHHHH
SFAVRDIAPDVLLIGNVGLAQLSEPVMPALERALERVGADALAVHTNPLQEAMQRDGDTD
HHHHHHCCCCEEEECCCCHHHHCCHHHHHHHHHHHHHCCCEEEECCCHHHHHHHCCCCCC
FTGSIDRLRTLAATLRQPVMLKEVGHGIGAAAAAELAGSALAAVDVAGAGGTSWARVEQL
CCCCHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHCCHHHHEEECCCCCCHHHHHHHH
VRYGEIRSPALAEWGIPTAQALLEVRGTLPDVAVVASGGIRTGMDAAKALAMGADVVAVA
HHHCCCCCCCHHHCCCHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCHHHHHH
RPLLAPAIESADAVVEWLRGFIDELRVCLHGCGAADLPALRRGGVLPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCC
>Mature Secondary Structure 
TVRPHTTRSGSGIGMETRKRRHIDVCLGGPVEYQTVTTGLERYRLPYNALTQTSLSRVR
CCCCCCCCCCCCCCCCHHCCCCEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
LDTRFLGKPLSAPVLIGAMTGGAELSGVINRNLAAAAQRLGVGMMLGSQRIMFDNDAVAS
HHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCHHEECCCEEEECCCHHHH
SFAVRDIAPDVLLIGNVGLAQLSEPVMPALERALERVGADALAVHTNPLQEAMQRDGDTD
HHHHHHCCCCEEEECCCCHHHHCCHHHHHHHHHHHHHCCCEEEECCCHHHHHHHCCCCCC
FTGSIDRLRTLAATLRQPVMLKEVGHGIGAAAAAELAGSALAAVDVAGAGGTSWARVEQL
CCCCHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHCCHHHHEEECCCCCCHHHHHHHH
VRYGEIRSPALAEWGIPTAQALLEVRGTLPDVAVVASGGIRTGMDAAKALAMGADVVAVA
HHHCCCCCCCHHHCCCHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCHHHHHH
RPLLAPAIESADAVVEWLRGFIDELRVCLHGCGAADLPALRRGGVLPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA