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The map label for this gene is sodC [H]

Identifier: 108797552

GI number: 108797552

Start: 633174

End: 633860

Strand: Direct

Name: sodC [H]

Synonym: Mmcs_0572

Alternate gene names: 108797552

Gene position: 633174-633860 (Clockwise)

Preceding gene: 108797551

Following gene: 108797553

Centisome position: 11.1

GC content: 69.72

Gene sequence:

>687_bases
ATGTTCGCCGTTCCCGCGCTCGCGCTGAGCGCCTGCAGTCCCAACGAGCCGGTGTCCAGCGAGCCGGGCACCACGCCGTC
GGTGTGGACCGGTTCGCCGTCTCCCTCGGCGGCGCCCGGACAGGGCGAAGAAGGCGGGAGCGGATCGGAAGGCCAGGGCG
AGGGTGGTCAGAAGCTGACCGCCGAGCTCAAGAGCCCGGACGGCACCACCGTGGCGAATGCGGAGTTCGACTTCAGCGGC
GGCTATGCCACCGTCACCGTCCAGACCGTCGCTTCGGGCCAGCTGGAACCGGGGTTCCACGGGATGCACGTCCACCAGGT
CGGCAAGTGCGAGCCGAATTCGGTCGCTCCCAGCGGCGGTGCGCCGGGCAACTTCAACTCCGCGGGCGGGCACTTCCAGA
CCGAGGGCAAGACCGGGCACCCGGCCAGCGGTGACCTCACCTCGCTGCAGGTCCGCGAGGACGGGTCGGCGATGGTGGTG
ACCACCACCGATGCGTTCACCGCCGAGGATCTGACCGGCGGTGAGGGCACCGCGATCATCATCCACGAGAAGGCCGACAA
CTTCGCGAACATCCCGCCGGAGAAGTACAACCAGGTCAACGGCACCCCGGGCCCGGACCAGGCGACCATGGCCACCGGTG
ACGCCGGTGGGCGGGTGGCGTGCGGTGTTATCCGTTCCGGCCAGTAG

Upstream 100 bases:

>100_bases
CCCCCGCTGGCCGAACAACCACCGGGCGTCGTCGTGGCGGTCACCGGTTAGGCTCTTGACCATGCTCAAGCCCGGTCTCA
CATCCGCCGCCGTCGCCGCC

Downstream 100 bases:

>100_bases
TCGTATCGACTTCGCCGGGTCACCCCGGCCCACCGTCGGCGTCGAGTGGGAGTTCGCGCTCGTCGACGCCCACACCCGCG
ATCTGAGCAACGAGGCGGCC

Product: copper/zinc binding superoxide dismutase protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MFAVPALALSACSPNEPVSSEPGTTPSVWTGSPSPSAAPGQGEEGGSGSEGQGEGGQKLTAELKSPDGTTVANAEFDFSG
GYATVTVQTVASGQLEPGFHGMHVHQVGKCEPNSVAPSGGAPGNFNSAGGHFQTEGKTGHPASGDLTSLQVREDGSAMVV
TTTDAFTAEDLTGGEGTAIIIHEKADNFANIPPEKYNQVNGTPGPDQATMATGDAGGRVACGVIRSGQ

Sequences:

>Translated_228_residues
MFAVPALALSACSPNEPVSSEPGTTPSVWTGSPSPSAAPGQGEEGGSGSEGQGEGGQKLTAELKSPDGTTVANAEFDFSG
GYATVTVQTVASGQLEPGFHGMHVHQVGKCEPNSVAPSGGAPGNFNSAGGHFQTEGKTGHPASGDLTSLQVREDGSAMVV
TTTDAFTAEDLTGGEGTAIIIHEKADNFANIPPEKYNQVNGTPGPDQATMATGDAGGRVACGVIRSGQ
>Mature_228_residues
MFAVPALALSACSPNEPVSSEPGTTPSVWTGSPSPSAAPGQGEEGGSGSEGQGEGGQKLTAELKSPDGTTVANAEFDFSG
GYATVTVQTVASGQLEPGFHGMHVHQVGKCEPNSVAPSGGAPGNFNSAGGHFQTEGKTGHPASGDLTSLQVREDGSAMVV
TTTDAFTAEDLTGGEGTAIIIHEKADNFANIPPEKYNQVNGTPGPDQATMATGDAGGRVACGVIRSGQ

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems. May play a role in favoring mycobacterial survival in phagocytes [H]

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018152
- InterPro:   IPR001424 [H]

Pfam domain/function: PF00080 Sod_Cu [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 22699; Mature: 22699

Theoretical pI: Translated: 4.22; Mature: 4.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFAVPALALSACSPNEPVSSEPGTTPSVWTGSPSPSAAPGQGEEGGSGSEGQGEGGQKLT
CCCCCCEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
AELKSPDGTTVANAEFDFSGGYATVTVQTVASGQLEPGFHGMHVHQVGKCEPNSVAPSGG
EEECCCCCCEEEECEEECCCCEEEEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCC
APGNFNSAGGHFQTEGKTGHPASGDLTSLQVREDGSAMVVTTTDAFTAEDLTGGEGTAII
CCCCCCCCCCEEEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCEECCCCCCCCCCEEE
IHEKADNFANIPPEKYNQVNGTPGPDQATMATGDAGGRVACGVIRSGQ
EECCCCCCCCCCHHHHCCCCCCCCCCCCEEEECCCCCEEEEEEEECCC
>Mature Secondary Structure
MFAVPALALSACSPNEPVSSEPGTTPSVWTGSPSPSAAPGQGEEGGSGSEGQGEGGQKLT
CCCCCCEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
AELKSPDGTTVANAEFDFSGGYATVTVQTVASGQLEPGFHGMHVHQVGKCEPNSVAPSGG
EEECCCCCCEEEECEEECCCCEEEEEEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCC
APGNFNSAGGHFQTEGKTGHPASGDLTSLQVREDGSAMVVTTTDAFTAEDLTGGEGTAII
CCCCCCCCCCEEEECCCCCCCCCCCEEEEEEECCCCEEEEEECCCEECCCCCCCCCCEEE
IHEKADNFANIPPEKYNQVNGTPGPDQATMATGDAGGRVACGVIRSGQ
EECCCCCCCCCCHHHHCCCCCCCCCCCCEEEECCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]