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The map label for this gene is ybdK [C]

Identifier: 108797553

GI number: 108797553

Start: 633838

End: 634968

Strand: Direct

Name: ybdK [C]

Synonym: Mmcs_0573

Alternate gene names: 108797553

Gene position: 633838-634968 (Clockwise)

Preceding gene: 108797552

Following gene: 108797554

Centisome position: 11.11

GC content: 65.87

Gene sequence:

>1131_bases
GTGTTATCCGTTCCGGCCAGTAGTCGTATCGACTTCGCCGGGTCACCCCGGCCCACCGTCGGCGTCGAGTGGGAGTTCGC
GCTCGTCGACGCCCACACCCGCGATCTGAGCAACGAGGCGGCCACCGTCATCGCCGAGATCGGCGAGACCCCGCACGTGC
ACAAGGAATTGCTGCGCAACACCGTCGAGGTCGTCACCGGGATCTGCGAGAACACCGGTGAGGCGATGGCGGATTTGCAC
GACACCCTGAAGGTCGTGCGCCGGATCGTGCGGGACCGCGGCATGGAACTGTTCTGTGCCGGGACGCACCCGTTCGCCAA
CTGGTCGACCCAGCAGCTGACCGACGCGCCGCGTTATGCCGAGCTGATCAAGCGCACGCAGTGGTGGGGCAGGCAGATGC
TGATCTGGGGTGTGCACGTGCACGTCGGGATCTCGTCGGCGCACAAGGTCATGCCCATCATCTCGTCGCTGCTCAACCAG
TACCCGCACCTGTTGGCGTTGTCCGCGTCCTCGCCGTACTGGGACGGTTCGGACACCGGATACGCCAGCAACCGGGCGAT
GATGTTCCAGCAGTTGCCGACCGCGGGGCTGCCGTTCCAGTTCCAGTCGTGGCCGGAGTTCGAACGGTTCGTCCACGATC
AGAAGAAGACCGGGATCATCGACCACATGAACGAGATCCGGTGGGACATCCGGCCCTCGCCTCATCTGGGCACCGTGGAG
ATCCGGGTCTTCGACGGGGTTTCCAACATCGCCGAACTCGGTTCACTGGTCGCGCTCACCCACTGCCTGGTCGTCGACCT
CGACCGCCGGCTCGACGCGGGGGAGCAGTTGCCGGTCATGCCGCCCTGGCATGTGCAGGAGAACAAGTGGCGCGCCGCGC
GCTATGGACTCGACGCCGAGATCATCCTCGACGCCGACAGCAACGAGCGGCTGGTCACCGAGGACCTCGACGACCTGCTC
ACCCGGTTGCAGCCGGTGGCCCGATCCCTGGACTGTGCCGACGAACTCGCCGGGGTCGCCGAGATCTACCGGCACGGTGC
CAGCTACCAGCGGCAACGCCGGGTCGCCGAGGAACACGACGGTGATCTGCTTGCGGTCGTTGACGCCCTGGTCGCCGAAC
TGGAGCTATAG

Upstream 100 bases:

>100_bases
GCGAACATCCCGCCGGAGAAGTACAACCAGGTCAACGGCACCCCGGGCCCGGACCAGGCGACCATGGCCACCGGTGACGC
CGGTGGGCGGGTGGCGTGCG

Downstream 100 bases:

>100_bases
AGTGGGTTGATGAGAGTGCGGCGATGGGTGCTGACGGGGTGCGCGGTCGCCGCACTCACCGCCGCCGGGTGCAGCAACGT
CACGACGGGGACGCCGATGG

Product: carboxylate-amine ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 376; Mature: 376

Protein sequence:

>376_residues
MLSVPASSRIDFAGSPRPTVGVEWEFALVDAHTRDLSNEAATVIAEIGETPHVHKELLRNTVEVVTGICENTGEAMADLH
DTLKVVRRIVRDRGMELFCAGTHPFANWSTQQLTDAPRYAELIKRTQWWGRQMLIWGVHVHVGISSAHKVMPIISSLLNQ
YPHLLALSASSPYWDGSDTGYASNRAMMFQQLPTAGLPFQFQSWPEFERFVHDQKKTGIIDHMNEIRWDIRPSPHLGTVE
IRVFDGVSNIAELGSLVALTHCLVVDLDRRLDAGEQLPVMPPWHVQENKWRAARYGLDAEIILDADSNERLVTEDLDDLL
TRLQPVARSLDCADELAGVAEIYRHGASYQRQRRVAEEHDGDLLAVVDALVAELEL

Sequences:

>Translated_376_residues
MLSVPASSRIDFAGSPRPTVGVEWEFALVDAHTRDLSNEAATVIAEIGETPHVHKELLRNTVEVVTGICENTGEAMADLH
DTLKVVRRIVRDRGMELFCAGTHPFANWSTQQLTDAPRYAELIKRTQWWGRQMLIWGVHVHVGISSAHKVMPIISSLLNQ
YPHLLALSASSPYWDGSDTGYASNRAMMFQQLPTAGLPFQFQSWPEFERFVHDQKKTGIIDHMNEIRWDIRPSPHLGTVE
IRVFDGVSNIAELGSLVALTHCLVVDLDRRLDAGEQLPVMPPWHVQENKWRAARYGLDAEIILDADSNERLVTEDLDDLL
TRLQPVARSLDCADELAGVAEIYRHGASYQRQRRVAEEHDGDLLAVVDALVAELEL
>Mature_376_residues
MLSVPASSRIDFAGSPRPTVGVEWEFALVDAHTRDLSNEAATVIAEIGETPHVHKELLRNTVEVVTGICENTGEAMADLH
DTLKVVRRIVRDRGMELFCAGTHPFANWSTQQLTDAPRYAELIKRTQWWGRQMLIWGVHVHVGISSAHKVMPIISSLLNQ
YPHLLALSASSPYWDGSDTGYASNRAMMFQQLPTAGLPFQFQSWPEFERFVHDQKKTGIIDHMNEIRWDIRPSPHLGTVE
IRVFDGVSNIAELGSLVALTHCLVVDLDRRLDAGEQLPVMPPWHVQENKWRAARYGLDAEIILDADSNERLVTEDLDDLL
TRLQPVARSLDCADELAGVAEIYRHGASYQRQRRVAEEHDGDLLAVVDALVAELEL

Specific function: ATP-dependent carboxylate-amine ligase [H]

COG id: COG2170

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carboxylate-amine ligase family [H]

Homologues:

Organism=Escherichia coli, GI1786795, Length=367, Percent_Identity=29.700272479564, Blast_Score=169, Evalue=3e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011793
- InterPro:   IPR006336 [H]

Pfam domain/function: PF04107 GCS2 [H]

EC number: NA

Molecular weight: Translated: 42229; Mature: 42229

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSVPASSRIDFAGSPRPTVGVEWEFALVDAHTRDLSNEAATVIAEIGETPHVHKELLRN
CCCCCCCCCCCCCCCCCCCCCCEEEEEEEECHHHHCCHHHHHHHHHHCCCCHHHHHHHHH
TVEVVTGICENTGEAMADLHDTLKVVRRIVRDRGMELFCAGTHPFANWSTQQLTDAPRYA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHCCHHHH
ELIKRTQWWGRQMLIWGVHVHVGISSAHKVMPIISSLLNQYPHLLALSASSPYWDGSDTG
HHHHHHHHHCCEEEEEEEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC
YASNRAMMFQQLPTAGLPFQFQSWPEFERFVHDQKKTGIIDHMNEIRWDIRPSPHLGTVE
CCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCEEE
IRVFDGVSNIAELGSLVALTHCLVVDLDRRLDAGEQLPVMPPWHVQENKWRAARYGLDAE
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCEE
IILDADSNERLVTEDLDDLLTRLQPVARSLDCADELAGVAEIYRHGASYQRQRRVAEEHD
EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
GDLLAVVDALVAELEL
CCHHHHHHHHHHHHCC
>Mature Secondary Structure
MLSVPASSRIDFAGSPRPTVGVEWEFALVDAHTRDLSNEAATVIAEIGETPHVHKELLRN
CCCCCCCCCCCCCCCCCCCCCCEEEEEEEECHHHHCCHHHHHHHHHHCCCCHHHHHHHHH
TVEVVTGICENTGEAMADLHDTLKVVRRIVRDRGMELFCAGTHPFANWSTQQLTDAPRYA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHCCHHHH
ELIKRTQWWGRQMLIWGVHVHVGISSAHKVMPIISSLLNQYPHLLALSASSPYWDGSDTG
HHHHHHHHHCCEEEEEEEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC
YASNRAMMFQQLPTAGLPFQFQSWPEFERFVHDQKKTGIIDHMNEIRWDIRPSPHLGTVE
CCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCEEE
IRVFDGVSNIAELGSLVALTHCLVVDLDRRLDAGEQLPVMPPWHVQENKWRAARYGLDAE
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCEE
IILDADSNERLVTEDLDDLLTRLQPVARSLDCADELAGVAEIYRHGASYQRQRRVAEEHD
EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
GDLLAVVDALVAELEL
CCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA