| Definition | Mycobacterium sp. MCS chromosome, complete genome. |
|---|---|
| Accession | NC_008146 |
| Length | 5,705,448 |
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The map label for this gene is 108796994
Identifier: 108796994
GI number: 108796994
Start: 15301
End: 16137
Strand: Direct
Name: 108796994
Synonym: Mmcs_0013
Alternate gene names: NA
Gene position: 15301-16137 (Clockwise)
Preceding gene: 108796991
Following gene: 108796995
Centisome position: 0.27
GC content: 73.36
Gene sequence:
>837_bases ATGGTGCAGATGCCCCCTGAGCCTAACGCAGGACCGGACCGGGAAACGCCGCCCACGACGTCGGCGGCCCCCGCGGCCCC GGCGCGCGCGGGCGCCGGCCGCCGCTCCGGGTGGCGGTTCGGGGTGCCGCTGGTGTGTCTGGCCGCCGGCCTGTTGCTGG CCGCCACCCACGGGGTGTCCGGCGGTGACGAGATCCGCCGCAGCGACGCACCCCGGCTGGTGGACCTCGTGCGGGAGGCG CAGCAGTCCGTCGACCGCCTCGGCGCCGAACGCGACACCCTCTCGGCGCAGGTCGACGGCCACCACGGTGGAAGCCCGGG CACCGATGCGGCGTTGAGCGCCATCACCAACCGGTCGGCGGCCCTGGCCGCCGAAGCGGGGCTGAACCCGGTGAAGGGGC CGGGCCTGGTCGTCACCCTCAACGACGCCCAGCGCGACGCCGAGGGCCGGTTCCCCAGGGACGCCTCCCCCGACGATCTG GTGGTCCATCAGCAGGACATCCAGGCGGTGCTCAACGCGCTGTGGAGCGCGGGCGCGGAGGGCGTCCAGATGCAGGACCA GCGGATCATCGCCACGTCCGCACCCCGCTGCGTCGGCAACACCCTGCTGCTCAACGGGCGCACCTACAGCCCGCCCTACG TCATCACCGCGATCGGTGACGCCGGCGCAATGCAGGCCGCGCTGTCGGCGTCCCCGCTGGTGACGCTCTACAAGCAGTAC GTGGTGCGGTTCGGCCTCGGCTACACCGAGGAGCCGCGCGCCGAGGTGGAACTCGTCGGCCACACCGAACCGGTCCGGAT GAAGCACGCACAGCCGATCGGACCCGTCGGGTACTGA
Upstream 100 bases:
>100_bases AAGTCGTTCTTCTTGCGGACCTTCGACTTGGGCATGGTCACCTTCGTGGCTGTCGGCGTCGCAGTTCCACCGGTGCGCTG ACCGGCTCCGAGATGCGACG
Downstream 100 bases:
>100_bases CACACCGGATGTAACCTGGCCGAATGCAGTTCTTGGTCGTCGACAATTACGACAGCTTCGTGTTCAACCTCGTCCAGTAC CTCGGACAGCTCGGGGTGGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 278; Mature: 278
Protein sequence:
>278_residues MVQMPPEPNAGPDRETPPTTSAAPAAPARAGAGRRSGWRFGVPLVCLAAGLLLAATHGVSGGDEIRRSDAPRLVDLVREA QQSVDRLGAERDTLSAQVDGHHGGSPGTDAALSAITNRSAALAAEAGLNPVKGPGLVVTLNDAQRDAEGRFPRDASPDDL VVHQQDIQAVLNALWSAGAEGVQMQDQRIIATSAPRCVGNTLLLNGRTYSPPYVITAIGDAGAMQAALSASPLVTLYKQY VVRFGLGYTEEPRAEVELVGHTEPVRMKHAQPIGPVGY
Sequences:
>Translated_278_residues MVQMPPEPNAGPDRETPPTTSAAPAAPARAGAGRRSGWRFGVPLVCLAAGLLLAATHGVSGGDEIRRSDAPRLVDLVREA QQSVDRLGAERDTLSAQVDGHHGGSPGTDAALSAITNRSAALAAEAGLNPVKGPGLVVTLNDAQRDAEGRFPRDASPDDL VVHQQDIQAVLNALWSAGAEGVQMQDQRIIATSAPRCVGNTLLLNGRTYSPPYVITAIGDAGAMQAALSASPLVTLYKQY VVRFGLGYTEEPRAEVELVGHTEPVRMKHAQPIGPVGY >Mature_278_residues MVQMPPEPNAGPDRETPPTTSAAPAAPARAGAGRRSGWRFGVPLVCLAAGLLLAATHGVSGGDEIRRSDAPRLVDLVREA QQSVDRLGAERDTLSAQVDGHHGGSPGTDAALSAITNRSAALAAEAGLNPVKGPGLVVTLNDAQRDAEGRFPRDASPDDL VVHQQDIQAVLNALWSAGAEGVQMQDQRIIATSAPRCVGNTLLLNGRTYSPPYVITAIGDAGAMQAALSASPLVTLYKQY VVRFGLGYTEEPRAEVELVGHTEPVRMKHAQPIGPVGY
Specific function: Unknown
COG id: COG3879
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0749 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010273 [H]
Pfam domain/function: PF05949 DUF881 [H]
EC number: NA
Molecular weight: Translated: 29012; Mature: 29012
Theoretical pI: Translated: 5.95; Mature: 5.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVQMPPEPNAGPDRETPPTTSAAPAAPARAGAGRRSGWRFGVPLVCLAAGLLLAATHGVS CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHCCCC GGDEIRRSDAPRLVDLVREAQQSVDRLGAERDTLSAQVDGHHGGSPGTDAALSAITNRSA CCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHCEEEECCCCCCCCCHHHHHHHHHCCHH ALAAEAGLNPVKGPGLVVTLNDAQRDAEGRFPRDASPDDLVVHQQDIQAVLNALWSAGAE HHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHCCCC GVQMQDQRIIATSAPRCVGNTLLLNGRTYSPPYVITAIGDAGAMQAALSASPLVTLYKQY CCEECCCEEEECCCCCHHCCEEEECCCCCCCCEEEEEECCCHHHHHHHCCCHHHHHHHHH VVRFGLGYTEEPRAEVELVGHTEPVRMKHAQPIGPVGY HHHHCCCCCCCCCCEEEEECCCCCCHHCCCCCCCCCCC >Mature Secondary Structure MVQMPPEPNAGPDRETPPTTSAAPAAPARAGAGRRSGWRFGVPLVCLAAGLLLAATHGVS CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHCCCC GGDEIRRSDAPRLVDLVREAQQSVDRLGAERDTLSAQVDGHHGGSPGTDAALSAITNRSA CCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHCEEEECCCCCCCCCHHHHHHHHHCCHH ALAAEAGLNPVKGPGLVVTLNDAQRDAEGRFPRDASPDDLVVHQQDIQAVLNALWSAGAE HHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHCCCC GVQMQDQRIIATSAPRCVGNTLLLNGRTYSPPYVITAIGDAGAMQAALSASPLVTLYKQY CCEECCCEEEECCCCCHHCCEEEECCCCCCCCEEEEEECCCHHHHHHHCCCHHHHHHHHH VVRFGLGYTEEPRAEVELVGHTEPVRMKHAQPIGPVGY HHHHCCCCCCCCCCEEEEECCCCCCHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]