| Definition | Myxococcus xanthus DK 1622 chromosome, complete genome. |
|---|---|
| Accession | NC_008095 |
| Length | 9,139,763 |
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The map label for this gene is mdoD [H]
Identifier: 108763699
GI number: 108763699
Start: 2772594
End: 2774183
Strand: Reverse
Name: mdoD [H]
Synonym: MXAN_2385
Alternate gene names: 108763699
Gene position: 2774183-2772594 (Counterclockwise)
Preceding gene: 108757873
Following gene: 108757938
Centisome position: 30.35
GC content: 70.44
Gene sequence:
>1590_bases GTGACGTCGTTGCGGCAGAAAGCGTTGAAGCTGGGTGCGCCGTGGCTGTGTGCCATGGCGGTGGCGTCGAGCGGCGCCGC CGTGGCGGCTCCGCCGGCCAAGGCCCAGACCGCGGCCACGAAGGGCACGACGGCCTTCTCCACGGAGACGGTGGTGGAGC GCGCGCGGGCGCTGGCGGCCCGGCCCTACCAGGCGCCGCCGAAGTCACTGCCGAAGGCGTACACGCAGCTCAACTACGAC CAGTACCGCGACATCCGCTTCCGTCCGGAGCGCGCGCACTGGCGAGACGCGGGCCTGCCCTTCCAGGTGCAGTTCTTCCA CCCGGGCTTCCTGTTCCAGTCCCCAGTGGTGATGAACGTCGTGGAGGCGGGCCGCTCGCAGCCGCTGCGCTTCTCCCAGG ACCTCTTCAGCTACGGCAAGGTCGTCAACAAGGCGTCCCTGCCTCGCAGCGGCGTGGACGGCTTCGCGGGCCTGCGCTTC CACCACCCGCTCAACCGCCCGGACATCTTCGACGAGCTCGCGGTGTTCCAGGGCGCCAGCTACTTCCGCTCGCTGGGCCA GGGCAACCTCTACGGCCTCTCCGCGCGTGGCATCGCCATCGACACCGCGCAGCCGAGCCCCGAGGAGTTCCCGGAGTTTC GAGAGTTCTGGCTGGAGCGCCCGGCCTCCGGCGCGGGCCAGGTGGTGGTTCACGCGCTGATGGACGGCCCGAGCATCACC GGGGCGTACCGCTTCACCATCACCCCGGGCTCGAACACGGTGATGGAGGTGCAGGCCACCCTCTTCTCGCGCCGCACCAT CGACAACCTGGGCGTGGCGCCGCTCACCAGCATGTACCTGTTCGGTGAGAACGACCGCGCGAAGTTCGACGACTTCCGGC CGGAGGTCCACGACTCGGACGGCCTCCTCGTCTGGACCAAGGACGGCGAGCAACTGTGGCGCCCGCTGCAGAACCCGCGG CAGGTGCGCACCTCCAGCTTCCGCGCGGAGACTCCGCGCGCCTTCGGTCTGTTGCAGCGCGATACGGCCTTCCACAACTA CGAGGACCTGGAGGCCCACTACGAGCGCCGCCCCAGCGCGTGGGTGGAGCCCGTGGGCGAATGGGGCGCGGGCGCGGTGC GGCTGGTGGAGATTCCGACGCCGGACGAGACGCACGACAACATCGTCGCCTTCTGGGTACCGGACGCGCCGCTCACCCCG GGCACGCCGCTGCGCGTGGCCTACCGCCTGCACTGGGGCGCCAGGTCGCCCTGGGAGAGCACCGGCGGCGTCGTCACCTC GACGCGCATCACCTCCGCCATCACCCCGGGCATGCCCGTGGGCGAAGGCGTCACGCCGGCCACGCGCCGATTCATCCTCG ACTTCTCTCGCACCGCCCGCGCCGAGGACGGGCCGGTGGAAGCCGTCATCACCGCGGCCAAGGGCCAGGTGCTGCGCTCC ACCATCCAGCGCCACGAACCTTCCGGGGGTTGGCGCACCACCTTCGAGCTGGAGCCCGAGGGCACCAGTGAACCCATCGA GCTGCGCGCGTTCCTGCGGCGCGGTTCGGAGACCCTCACCGAGACCTGGAGCTATCTATGGATTCCGTGA
Upstream 100 bases:
>100_bases CTGACGCGCCGCACCGCGAGTCCACGCGGAGCGTGCGGTCGGGCGAGGTCCGGGACACCGGAGCCGTTCGGCGAAACCTC TCCTTCGGAGGCGCTCGGAC
Downstream 100 bases:
>100_bases CGACGCCGAACACCAGCCCCTCCGTGCCGACCGACTGGGTCCGTCCGGAGACGTGCGTGGCGCTCGACGCCTTCTTCCAG GGCTTCGGCTTCGAATCCGC
Product: glucan biosynthesis protein D
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 529; Mature: 528
Protein sequence:
>529_residues MTSLRQKALKLGAPWLCAMAVASSGAAVAAPPAKAQTAATKGTTAFSTETVVERARALAARPYQAPPKSLPKAYTQLNYD QYRDIRFRPERAHWRDAGLPFQVQFFHPGFLFQSPVVMNVVEAGRSQPLRFSQDLFSYGKVVNKASLPRSGVDGFAGLRF HHPLNRPDIFDELAVFQGASYFRSLGQGNLYGLSARGIAIDTAQPSPEEFPEFREFWLERPASGAGQVVVHALMDGPSIT GAYRFTITPGSNTVMEVQATLFSRRTIDNLGVAPLTSMYLFGENDRAKFDDFRPEVHDSDGLLVWTKDGEQLWRPLQNPR QVRTSSFRAETPRAFGLLQRDTAFHNYEDLEAHYERRPSAWVEPVGEWGAGAVRLVEIPTPDETHDNIVAFWVPDAPLTP GTPLRVAYRLHWGARSPWESTGGVVTSTRITSAITPGMPVGEGVTPATRRFILDFSRTARAEDGPVEAVITAAKGQVLRS TIQRHEPSGGWRTTFELEPEGTSEPIELRAFLRRGSETLTETWSYLWIP
Sequences:
>Translated_529_residues MTSLRQKALKLGAPWLCAMAVASSGAAVAAPPAKAQTAATKGTTAFSTETVVERARALAARPYQAPPKSLPKAYTQLNYD QYRDIRFRPERAHWRDAGLPFQVQFFHPGFLFQSPVVMNVVEAGRSQPLRFSQDLFSYGKVVNKASLPRSGVDGFAGLRF HHPLNRPDIFDELAVFQGASYFRSLGQGNLYGLSARGIAIDTAQPSPEEFPEFREFWLERPASGAGQVVVHALMDGPSIT GAYRFTITPGSNTVMEVQATLFSRRTIDNLGVAPLTSMYLFGENDRAKFDDFRPEVHDSDGLLVWTKDGEQLWRPLQNPR QVRTSSFRAETPRAFGLLQRDTAFHNYEDLEAHYERRPSAWVEPVGEWGAGAVRLVEIPTPDETHDNIVAFWVPDAPLTP GTPLRVAYRLHWGARSPWESTGGVVTSTRITSAITPGMPVGEGVTPATRRFILDFSRTARAEDGPVEAVITAAKGQVLRS TIQRHEPSGGWRTTFELEPEGTSEPIELRAFLRRGSETLTETWSYLWIP >Mature_528_residues TSLRQKALKLGAPWLCAMAVASSGAAVAAPPAKAQTAATKGTTAFSTETVVERARALAARPYQAPPKSLPKAYTQLNYDQ YRDIRFRPERAHWRDAGLPFQVQFFHPGFLFQSPVVMNVVEAGRSQPLRFSQDLFSYGKVVNKASLPRSGVDGFAGLRFH HPLNRPDIFDELAVFQGASYFRSLGQGNLYGLSARGIAIDTAQPSPEEFPEFREFWLERPASGAGQVVVHALMDGPSITG AYRFTITPGSNTVMEVQATLFSRRTIDNLGVAPLTSMYLFGENDRAKFDDFRPEVHDSDGLLVWTKDGEQLWRPLQNPRQ VRTSSFRAETPRAFGLLQRDTAFHNYEDLEAHYERRPSAWVEPVGEWGAGAVRLVEIPTPDETHDNIVAFWVPDAPLTPG TPLRVAYRLHWGARSPWESTGGVVTSTRITSAITPGMPVGEGVTPATRRFILDFSRTARAEDGPVEAVITAAKGQVLRST IQRHEPSGGWRTTFELEPEGTSEPIELRAFLRRGSETLTETWSYLWIP
Specific function: Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs) [H]
COG id: COG3131
COG function: function code P; Periplasmic glucans biosynthesis protein
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the opgD/opgG family [H]
Homologues:
Organism=Escherichia coli, GI1787286, Length=507, Percent_Identity=41.025641025641, Blast_Score=400, Evalue=1e-112, Organism=Escherichia coli, GI145693128, Length=529, Percent_Identity=36.2948960302458, Blast_Score=315, Evalue=4e-87,
Paralogues:
None
Copy number: 280 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014438 - InterPro: IPR007444 - InterPro: IPR011013 - InterPro: IPR014756 [H]
Pfam domain/function: PF04349 MdoG [H]
EC number: NA
Molecular weight: Translated: 58716; Mature: 58584
Theoretical pI: Translated: 7.88; Mature: 7.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSLRQKALKLGAPWLCAMAVASSGAAVAAPPAKAQTAATKGTTAFSTETVVERARALAA CCHHHHHHHHCCCCHHHHHHHHCCCCEEECCCCCHHHHCCCCCCCCHHHHHHHHHHHHHC RPYQAPPKSLPKAYTQLNYDQYRDIRFRPERAHWRDAGLPFQVQFFHPGFLFQSPVVMNV CCCCCCHHHHHHHHHHCCHHHHCCCEECCCCCCCCCCCCCEEEEEECCCCHHCCCHHHHH VEAGRSQPLRFSQDLFSYGKVVNKASLPRSGVDGFAGLRFHHPLNRPDIFDELAVFQGAS HHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHCCCH YFRSLGQGNLYGLSARGIAIDTAQPSPEEFPEFREFWLERPASGAGQVVVHALMDGPSIT HHHHCCCCCEEEEEECCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCC GAYRFTITPGSNTVMEVQATLFSRRTIDNLGVAPLTSMYLFGENDRAKFDDFRPEVHDSD EEEEEEEECCCCCEEEHHHHHHHHHHHHHCCCCCHHEEEEECCCCCCCCCCCCCCCCCCC GLLVWTKDGEQLWRPLQNPRQVRTSSFRAETPRAFGLLQRDTAFHNYEDLEAHYERRPSA CEEEEECCHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCCH WVEPVGEWGAGAVRLVEIPTPDETHDNIVAFWVPDAPLTPGTPLRVAYRLHWGARSPWES HHCCCCCCCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCC TGGVVTSTRITSAITPGMPVGEGVTPATRRFILDFSRTARAEDGPVEAVITAAKGQVLRS CCCEEEEHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHH TIQRHEPSGGWRTTFELEPEGTSEPIELRAFLRRGSETLTETWSYLWIP HHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCEEECC >Mature Secondary Structure TSLRQKALKLGAPWLCAMAVASSGAAVAAPPAKAQTAATKGTTAFSTETVVERARALAA CHHHHHHHHCCCCHHHHHHHHCCCCEEECCCCCHHHHCCCCCCCCHHHHHHHHHHHHHC RPYQAPPKSLPKAYTQLNYDQYRDIRFRPERAHWRDAGLPFQVQFFHPGFLFQSPVVMNV CCCCCCHHHHHHHHHHCCHHHHCCCEECCCCCCCCCCCCCEEEEEECCCCHHCCCHHHHH VEAGRSQPLRFSQDLFSYGKVVNKASLPRSGVDGFAGLRFHHPLNRPDIFDELAVFQGAS HHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHCCCH YFRSLGQGNLYGLSARGIAIDTAQPSPEEFPEFREFWLERPASGAGQVVVHALMDGPSIT HHHHCCCCCEEEEEECCEEEECCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCC GAYRFTITPGSNTVMEVQATLFSRRTIDNLGVAPLTSMYLFGENDRAKFDDFRPEVHDSD EEEEEEEECCCCCEEEHHHHHHHHHHHHHCCCCCHHEEEEECCCCCCCCCCCCCCCCCCC GLLVWTKDGEQLWRPLQNPRQVRTSSFRAETPRAFGLLQRDTAFHNYEDLEAHYERRPSA CEEEEECCHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCCH WVEPVGEWGAGAVRLVEIPTPDETHDNIVAFWVPDAPLTPGTPLRVAYRLHWGARSPWES HHCCCCCCCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCC TGGVVTSTRITSAITPGMPVGEGVTPATRRFILDFSRTARAEDGPVEAVITAAKGQVLRS CCCEEEEHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHH TIQRHEPSGGWRTTFELEPEGTSEPIELRAFLRRGSETLTETWSYLWIP HHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCHHHHHCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA