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The map label for this gene is smpB

Identifier: 108763344

GI number: 108763344

Start: 2388690

End: 2389178

Strand: Direct

Name: smpB

Synonym: MXAN_2057

Alternate gene names: 108763344

Gene position: 2388690-2389178 (Clockwise)

Preceding gene: 108761160

Following gene: 108759065

Centisome position: 26.14

GC content: 62.78

Gene sequence:

>489_bases
ATGACATCCGGAGGGAAGTCAAAGGGAGTGGGCAGTGAGCCCGGCGTGAGAGTCATCGCGGAAAACCGTCGTGCGCGTTT
CGACTACACGGTCGACGAAAAGGTGGAGGCCGGGCTGGCGCTCACGGGAAGCGAGGTGAAGTCTCTGCGAGACGGAATCG
CCAATCTGTCGGACGCCTACGCGCTCCCCAAGGGGGACGAGCTCTTCCTGCTCAACGCGAACATCGGCTCCTACAAGGCG
GCGAGCTTCTTCGACCACCTTCCCACTCGGGGTCGCAAGTTGTTGATGCACCGAGGAGAAATCGACCGTTGGACGGCGAA
GGTGCGTGAGCGGGGTTATTCGATCATCCCGCTTGTGCTGTACTTCAGGAACGGCCGTGCCAAGGTGGAGCTGGGGCTCT
GCCGGGGCAAGACGCATGAGGACCGGCGCCACGACATCAAGGAGCGGGAGACGAAGCGGGAGATGGACCGGGCGATGCGC
CGACGTTGA

Upstream 100 bases:

>100_bases
CGCCCGGGCAGCCTGCCCGGTTGCTCGTCGCGGCCTTCAGTGGCACGACGCGCCTCATCGACAACATGCAGTTGGGTGGT
GAGGAGAACGCGGGACGCGT

Downstream 100 bases:

>100_bases
GAGGGGCGCCCGAAGTTCTTTCGCCGTACACCGATGGACGACAAGAAGGTTCTCGACAAGAAGGAGCGGCTGCTGGCCGC
GCTCGACCAGGGCATGGTGA

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 161

Protein sequence:

>162_residues
MTSGGKSKGVGSEPGVRVIAENRRARFDYTVDEKVEAGLALTGSEVKSLRDGIANLSDAYALPKGDELFLLNANIGSYKA
ASFFDHLPTRGRKLLMHRGEIDRWTAKVRERGYSIIPLVLYFRNGRAKVELGLCRGKTHEDRRHDIKERETKREMDRAMR
RR

Sequences:

>Translated_162_residues
MTSGGKSKGVGSEPGVRVIAENRRARFDYTVDEKVEAGLALTGSEVKSLRDGIANLSDAYALPKGDELFLLNANIGSYKA
ASFFDHLPTRGRKLLMHRGEIDRWTAKVRERGYSIIPLVLYFRNGRAKVELGLCRGKTHEDRRHDIKERETKREMDRAMR
RR
>Mature_161_residues
TSGGKSKGVGSEPGVRVIAENRRARFDYTVDEKVEAGLALTGSEVKSLRDGIANLSDAYALPKGDELFLLNANIGSYKAA
SFFDHLPTRGRKLLMHRGEIDRWTAKVRERGYSIIPLVLYFRNGRAKVELGLCRGKTHEDRRHDIKERETKREMDRAMRR
R

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family

Homologues:

Organism=Escherichia coli, GI1788973, Length=157, Percent_Identity=45.2229299363057, Blast_Score=131, Evalue=2e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SSRP_MYXXD (Q1DAN7)

Other databases:

- EMBL:   CP000113
- RefSeq:   YP_630286.1
- ProteinModelPortal:   Q1DAN7
- SMR:   Q1DAN7
- STRING:   Q1DAN7
- GeneID:   4107100
- GenomeReviews:   CP000113_GR
- KEGG:   mxa:MXAN_2057
- TIGR:   MXAN_2057
- eggNOG:   COG0691
- HOGENOM:   HBG293422
- OMA:   EKYEAGI
- PhylomeDB:   Q1DAN7
- ProtClustDB:   PRK05422
- BioCyc:   MXAN246197:MXAN_2057-MONOMER
- GO:   GO:0005737
- GO:   GO:0006412
- HAMAP:   MF_00023
- InterPro:   IPR000037
- InterPro:   IPR020081
- Gene3D:   G3DSA:2.40.280.10
- ProDom:   PD004488
- TIGRFAMs:   TIGR00086

Pfam domain/function: PF01668 SmpB; SSF74982 SmpB

EC number: NA

Molecular weight: Translated: 18405; Mature: 18274

Theoretical pI: Translated: 10.63; Mature: 10.63

Prosite motif: PS01317 SSRP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSGGKSKGVGSEPGVRVIAENRRARFDYTVDEKVEAGLALTGSEVKSLRDGIANLSDAY
CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHCCEEECHHHHHHHHHHHHHHHHHC
ALPKGDELFLLNANIGSYKAASFFDHLPTRGRKLLMHRGEIDRWTAKVRERGYSIIPLVL
CCCCCCEEEEEECCCCCCHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHCCCCEEEEEE
YFRNGRAKVELGLCRGKTHEDRRHDIKERETKREMDRAMRRR
EEECCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TSGGKSKGVGSEPGVRVIAENRRARFDYTVDEKVEAGLALTGSEVKSLRDGIANLSDAY
CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHCCEEECHHHHHHHHHHHHHHHHHC
ALPKGDELFLLNANIGSYKAASFFDHLPTRGRKLLMHRGEIDRWTAKVRERGYSIIPLVL
CCCCCCEEEEEECCCCCCHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHCCCCEEEEEE
YFRNGRAKVELGLCRGKTHEDRRHDIKERETKREMDRAMRRR
EEECCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA