| Definition | Myxococcus xanthus DK 1622 chromosome, complete genome. |
|---|---|
| Accession | NC_008095 |
| Length | 9,139,763 |
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The map label for this gene is menB [H]
Identifier: 108763330
GI number: 108763330
Start: 3695375
End: 3696268
Strand: Direct
Name: menB [H]
Synonym: MXAN_3154
Alternate gene names: 108763330
Gene position: 3695375-3696268 (Clockwise)
Preceding gene: 108762727
Following gene: 108758756
Centisome position: 40.43
GC content: 67.11
Gene sequence:
>894_bases ATGGTCTCGGACATCTTCAATCCGGCGCGCTGGAAGGCCGTCGAGGGCTTCAAGTTCAAGGACATCACCTTCCACCGCGC GGTGGACCAGGGCACGGTCCGCATCGCGTTCAACCGCCCGGAGGTCCGCAACGCCTTCCGGCCCCGCACCGTGGATGAGC TGTCCCGCGCGCTGGAGGCCACGCGCTTCATGACGGACGTGGGGTGCGTGCTCATCACGGGCAACGGGCCGTCGCCCAAG GATGGCGGCTGGGCCTTCTGCTCCGGTGGTGACCAGCGCATCCGCGGCAAGGACGGCTACAAGTACGAGGGCGAGGAGGG TGAGTCCGACCCCGCGCGCCTGGGCCGGCTCCACATCCTGGAGGTTCAGCGGCAGATTCGTTTCCTGCCCAAGGCCGTCA TCGCCGTGGTGCCCGGCTGGGCCGTGGGCGGTGGGCACAGCCTTCACGTCGTCTGTGACATGACCATCGCAAGCAAGGAG CACGCGGTGTTCAAGCAGACGGACGCGGACGTGGCGTCGTTCGACGCGGGCTACGGTTCTGCGCTGCTGGCGCGGCAGAT TGGTCAGAAGCGGGCGCGGGAGATCTTCTTCGTGGGCGCCAACTACTCGGCGGAGGAGGCCTTCCAGATGGGCATGGTCA ACGCCGTGGTGCCCCATGCGCAGTTGGAGGAGTTCGCGCTGGAGTGGGCGGCGGAGATCAACACGAAGAGCCCTACGGCC ATCAAGATGTTGAAGTACGCGTTCAACCTGCCCGACGACGGACTGGTGGGCCAGCAGCTCTTCGCGGGCGAGGCCACCCG CCTGGCCTACGGCACCGACGAGGCGCAGGAAGGCCGCGACGCCTTCGTCCAGAAGCGCAAGCGCGACTTCAAGCGCTTCC CCTGGTCGTACTGA
Upstream 100 bases:
>100_bases GATGGCGCCCGTGCGGGCTGCGCGCGCATCCCTGGACGGGCGCTGCCGCTGCGCCTAGGGTCCGCGCGCATCCACTTCTC TCCCCCCGAGTGAGAACACC
Downstream 100 bases:
>100_bases AACCGCGGACGCCGAGGCGGCGCGGACGCCCTGGGAATACCCATCCAGGGTGATGGTCGGTGGAAGGGGCCTCGTGTTCT AGGCCTCTTCCATGCCGAAG
Product: naphthoate synthase
Products: NA
Alternate protein names: DHNA-CoA synthase [H]
Number of amino acids: Translated: 297; Mature: 297
Protein sequence:
>297_residues MVSDIFNPARWKAVEGFKFKDITFHRAVDQGTVRIAFNRPEVRNAFRPRTVDELSRALEATRFMTDVGCVLITGNGPSPK DGGWAFCSGGDQRIRGKDGYKYEGEEGESDPARLGRLHILEVQRQIRFLPKAVIAVVPGWAVGGGHSLHVVCDMTIASKE HAVFKQTDADVASFDAGYGSALLARQIGQKRAREIFFVGANYSAEEAFQMGMVNAVVPHAQLEEFALEWAAEINTKSPTA IKMLKYAFNLPDDGLVGQQLFAGEATRLAYGTDEAQEGRDAFVQKRKRDFKRFPWSY
Sequences:
>Translated_297_residues MVSDIFNPARWKAVEGFKFKDITFHRAVDQGTVRIAFNRPEVRNAFRPRTVDELSRALEATRFMTDVGCVLITGNGPSPK DGGWAFCSGGDQRIRGKDGYKYEGEEGESDPARLGRLHILEVQRQIRFLPKAVIAVVPGWAVGGGHSLHVVCDMTIASKE HAVFKQTDADVASFDAGYGSALLARQIGQKRAREIFFVGANYSAEEAFQMGMVNAVVPHAQLEEFALEWAAEINTKSPTA IKMLKYAFNLPDDGLVGQQLFAGEATRLAYGTDEAQEGRDAFVQKRKRDFKRFPWSY >Mature_297_residues MVSDIFNPARWKAVEGFKFKDITFHRAVDQGTVRIAFNRPEVRNAFRPRTVDELSRALEATRFMTDVGCVLITGNGPSPK DGGWAFCSGGDQRIRGKDGYKYEGEEGESDPARLGRLHILEVQRQIRFLPKAVIAVVPGWAVGGGHSLHVVCDMTIASKE HAVFKQTDADVASFDAGYGSALLARQIGQKRAREIFFVGANYSAEEAFQMGMVNAVVPHAQLEEFALEWAAEINTKSPTA IKMLKYAFNLPDDGLVGQQLFAGEATRLAYGTDEAQEGRDAFVQKRKRDFKRFPWSY
Specific function: Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA) [H]
COG id: COG0447
COG function: function code H; Dihydroxynaphthoic acid synthase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the enoyl-CoA hydratase/isomerase family [H]
Homologues:
Organism=Homo sapiens, GI194097323, Length=295, Percent_Identity=29.4915254237288, Blast_Score=103, Evalue=2e-22, Organism=Homo sapiens, GI31542718, Length=273, Percent_Identity=29.6703296703297, Blast_Score=87, Evalue=2e-17, Organism=Escherichia coli, GI1788597, Length=290, Percent_Identity=45.8620689655172, Blast_Score=254, Evalue=5e-69, Organism=Escherichia coli, GI1787659, Length=269, Percent_Identity=28.996282527881, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI87082183, Length=265, Percent_Identity=26.7924528301887, Blast_Score=84, Evalue=8e-18, Organism=Escherichia coli, GI1787660, Length=264, Percent_Identity=29.1666666666667, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI221142681, Length=269, Percent_Identity=25.6505576208178, Blast_Score=64, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17554946, Length=259, Percent_Identity=28.5714285714286, Blast_Score=90, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17540714, Length=222, Percent_Identity=27.4774774774775, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI25145438, Length=272, Percent_Identity=27.5735294117647, Blast_Score=75, Evalue=6e-14, Organism=Drosophila melanogaster, GI20129971, Length=257, Percent_Identity=27.2373540856031, Blast_Score=85, Evalue=6e-17, Organism=Drosophila melanogaster, GI24653477, Length=257, Percent_Identity=27.2373540856031, Blast_Score=85, Evalue=6e-17, Organism=Drosophila melanogaster, GI24653139, Length=270, Percent_Identity=27.4074074074074, Blast_Score=74, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014748 - InterPro: IPR001753 - InterPro: IPR010198 [H]
Pfam domain/function: PF00378 ECH [H]
EC number: =4.1.3.36 [H]
Molecular weight: Translated: 33014; Mature: 33014
Theoretical pI: Translated: 8.08; Mature: 8.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVSDIFNPARWKAVEGFKFKDITFHRAVDQGTVRIAFNRPEVRNAFRPRTVDELSRALEA CCCCCCCCHHHHEECCCEEECEEEEHCCCCCEEEEEECCCHHHHCCCCCCHHHHHHHHHH TRFMTDVGCVLITGNGPSPKDGGWAFCSGGDQRIRGKDGYKYEGEEGESDPARLGRLHIL HHHHHHCCEEEEECCCCCCCCCCEEEECCCCCEECCCCCCEECCCCCCCCHHHHCCHHHH EVQRQIRFLPKAVIAVVPGWAVGGGHSLHVVCDMTIASKEHAVFKQTDADVASFDAGYGS HHHHHHHHHHHHHHHHCCCCEECCCCEEEEEEEEEECCCCCHHHCCCCCCHHHCCCCCCH ALLARQIGQKRAREIFFVGANYSAEEAFQMGMVNAVVPHAQLEEFALEWAAEINTKSPTA HHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHH IKMLKYAFNLPDDGLVGQQLFAGEATRLAYGTDEAQEGRDAFVQKRKRDFKRFPWSY HHHHHHHHCCCCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MVSDIFNPARWKAVEGFKFKDITFHRAVDQGTVRIAFNRPEVRNAFRPRTVDELSRALEA CCCCCCCCHHHHEECCCEEECEEEEHCCCCCEEEEEECCCHHHHCCCCCCHHHHHHHHHH TRFMTDVGCVLITGNGPSPKDGGWAFCSGGDQRIRGKDGYKYEGEEGESDPARLGRLHIL HHHHHHCCEEEEECCCCCCCCCCEEEECCCCCEECCCCCCEECCCCCCCCHHHHCCHHHH EVQRQIRFLPKAVIAVVPGWAVGGGHSLHVVCDMTIASKEHAVFKQTDADVASFDAGYGS HHHHHHHHHHHHHHHHCCCCEECCCCEEEEEEEEEECCCCCHHHCCCCCCHHHCCCCCCH ALLARQIGQKRAREIFFVGANYSAEEAFQMGMVNAVVPHAQLEEFALEWAAEINTKSPTA HHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHH IKMLKYAFNLPDDGLVGQQLFAGEATRLAYGTDEAQEGRDAFVQKRKRDFKRFPWSY HHHHHHHHCCCCCCCCCHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]