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The map label for this gene is gid

Identifier: 108763266

GI number: 108763266

Start: 3530098

End: 3531471

Strand: Direct

Name: gid

Synonym: MXAN_3007

Alternate gene names: 108763266

Gene position: 3530098-3531471 (Clockwise)

Preceding gene: 108757762

Following gene: 108760348

Centisome position: 38.62

GC content: 68.92

Gene sequence:

>1374_bases
ATGGCGGATCAGAAGCAGCGGGTGACGGTGATTGGCGGCGGCCTGGCGGGGACGGAGTGCGCCTACCAGCTCTCCCGCCG
CGGGGTGCCGGTGGTGCTGCGGGAGATGAAGCCCCAGAAGCGTTCTCCCGCGCACAAGTCGGACACGCTGGCGGAGCTGG
TGTGCAGCAACTCGCTGCGCTCGGACAACCCGGAGAGCGCCATTGGCCTGCTGCACGCGGAGCTGCGCGCGCTGGGCTCG
TTGGTGCTGAGCGCGGCGGACGCGAACCGGGTGCCCGCGGGGGACGCGCTGGCGGTGGAGCGCGAGCGCTTCTCCGCCGC
GATTACGGAGTCCCTGCTGCGCCAGCCCGGCGTGGAGCTGGTGGCCGGCGAGGTGGAGCAGCTGCCCGAGGACGGCCCGG
TGGTGATTGCCACGGGACCGCTCACGTCGGATGCGCTGACGCGGGAGCTGGAGCGCCACGTGGGCACCCGGCTCTACTTC
TATGACTCCATCGCGCCCATCCTGTCGGCGGACTCCATCGACATGAACGTGGCGTTCCGCCAGAGCCGCTACGGCAAGGG
CGGCGGGGACGACTACCTCAACCTTCCGATGACGAAGGACGAGTACTACCGCTTCATCGCCGAGGTGAAGGCGGGTCAGA
AGGTGGTGCCGCACGCTTTCGAGGAACCCAAGTACTTCGAAGGGTGTCTGCCCATTGAAGTGATGGCCGAGCGTGGCGAC
GACACCCTGGCCTATGGGCCCATGAAGCCGGTGGGCCTGAGGGACCCGCGCACGGGCCAGGAGCCCTACGCGGTGGTGCA
GCTGCGCATGGAGGACGTGGGCGGCACGTCCTGGAACATGGTGGGCTTCCAGACGCGGCTGACCTGGGGTGAACAGAAGC
GCATCTTCAGCAGCTTCATCCCCGGACTTCAGCAAGCGGAGTTCCTCCGGATGGGGCAGATCCACCGGAACACCTTCATC
GACTCGCCCCGGCTGCTGGCGAAGGACTTGTCGCTGAAGACGGAGCCCCGGCTCTACTTCGCGGGGCAGATCTCCGGCGT
GGAGGGCTACGTGGAGAGCGCGGCATGTGGATACCTGGTGGCGTTGGCGCTGCACGCACGGCTGACGGGGACGGAGTTCG
TTCCGCCGCCGGCCACCACGGCGATGGGCGCGCTGCTGCGGCACGTGACGGGCGAAGCGCACCCGCCGGACTACCCGCAC
CAGCCCTCCAACATCAGCTTCGGCATCTTTTCGCCGCTGACCGGGCGGATGAAGAAGGCGGAGAAGCGCGCGGCGTATTC
GGCGCGAGCGAAGCAGGACCTGGCGGCATGGCTGCCGCATGCGGGCGTCCCGGCGGCGGGCGCCCCCGAGCACGTGGATC
AGAGGAGCGCATGA

Upstream 100 bases:

>100_bases
GAGCGTGGGGTCACACACGGTTGAATCGACGCTGGGCCAGGGCGTGTCAGTCCTGCTAACAGTTGCTGGACGCCGCGCGG
CGCGGGCCTGGAGGAAGCGG

Downstream 100 bases:

>100_bases
TGCGGATGCGGCAGGGGCGGCTGTGGACCGCGGGCCTGATGGCCTCGCTGGTGATGGCGGGCACGGGCTGCAAGCAGGGC
GAAAATGGCGGCTCGGAGGC

Product: tRNA (uracil-5-)-methyltransferase Gid

Products: NA

Alternate protein names: Folate-dependent tRNA (uracil-5-)-methyltransferase; Folate-dependent tRNA(M-5-U54)-methyltransferase

Number of amino acids: Translated: 457; Mature: 456

Protein sequence:

>457_residues
MADQKQRVTVIGGGLAGTECAYQLSRRGVPVVLREMKPQKRSPAHKSDTLAELVCSNSLRSDNPESAIGLLHAELRALGS
LVLSAADANRVPAGDALAVERERFSAAITESLLRQPGVELVAGEVEQLPEDGPVVIATGPLTSDALTRELERHVGTRLYF
YDSIAPILSADSIDMNVAFRQSRYGKGGGDDYLNLPMTKDEYYRFIAEVKAGQKVVPHAFEEPKYFEGCLPIEVMAERGD
DTLAYGPMKPVGLRDPRTGQEPYAVVQLRMEDVGGTSWNMVGFQTRLTWGEQKRIFSSFIPGLQQAEFLRMGQIHRNTFI
DSPRLLAKDLSLKTEPRLYFAGQISGVEGYVESAACGYLVALALHARLTGTEFVPPPATTAMGALLRHVTGEAHPPDYPH
QPSNISFGIFSPLTGRMKKAEKRAAYSARAKQDLAAWLPHAGVPAAGAPEHVDQRSA

Sequences:

>Translated_457_residues
MADQKQRVTVIGGGLAGTECAYQLSRRGVPVVLREMKPQKRSPAHKSDTLAELVCSNSLRSDNPESAIGLLHAELRALGS
LVLSAADANRVPAGDALAVERERFSAAITESLLRQPGVELVAGEVEQLPEDGPVVIATGPLTSDALTRELERHVGTRLYF
YDSIAPILSADSIDMNVAFRQSRYGKGGGDDYLNLPMTKDEYYRFIAEVKAGQKVVPHAFEEPKYFEGCLPIEVMAERGD
DTLAYGPMKPVGLRDPRTGQEPYAVVQLRMEDVGGTSWNMVGFQTRLTWGEQKRIFSSFIPGLQQAEFLRMGQIHRNTFI
DSPRLLAKDLSLKTEPRLYFAGQISGVEGYVESAACGYLVALALHARLTGTEFVPPPATTAMGALLRHVTGEAHPPDYPH
QPSNISFGIFSPLTGRMKKAEKRAAYSARAKQDLAAWLPHAGVPAAGAPEHVDQRSA
>Mature_456_residues
ADQKQRVTVIGGGLAGTECAYQLSRRGVPVVLREMKPQKRSPAHKSDTLAELVCSNSLRSDNPESAIGLLHAELRALGSL
VLSAADANRVPAGDALAVERERFSAAITESLLRQPGVELVAGEVEQLPEDGPVVIATGPLTSDALTRELERHVGTRLYFY
DSIAPILSADSIDMNVAFRQSRYGKGGGDDYLNLPMTKDEYYRFIAEVKAGQKVVPHAFEEPKYFEGCLPIEVMAERGDD
TLAYGPMKPVGLRDPRTGQEPYAVVQLRMEDVGGTSWNMVGFQTRLTWGEQKRIFSSFIPGLQQAEFLRMGQIHRNTFID
SPRLLAKDLSLKTEPRLYFAGQISGVEGYVESAACGYLVALALHARLTGTEFVPPPATTAMGALLRHVTGEAHPPDYPHQ
PSNISFGIFSPLTGRMKKAEKRAAYSARAKQDLAAWLPHAGVPAAGAPEHVDQRSA

Specific function: Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs

COG id: COG1206

COG function: function code J; NAD(FAD)-utilizing enzyme possibly involved in translation

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the MnmG family. TrmFO subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): TRMFO_MYXXD (Q9S449)

Other databases:

- EMBL:   AF162663
- EMBL:   AY204472
- EMBL:   CP000113
- RefSeq:   YP_631216.1
- ProteinModelPortal:   Q9S449
- STRING:   Q9S449
- GeneID:   4107021
- GenomeReviews:   CP000113_GR
- KEGG:   mxa:MXAN_3007
- TIGR:   MXAN_3007
- eggNOG:   COG1206
- HOGENOM:   HBG285041
- OMA:   FEGCLPI
- ProtClustDB:   PRK05335
- BioCyc:   MXAN246197:MXAN_3007-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01037
- InterPro:   IPR004417
- InterPro:   IPR002218
- TIGRFAMs:   TIGR00137

Pfam domain/function: PF01134 GIDA

EC number: =2.1.1.74

Molecular weight: Translated: 49764; Mature: 49633

Theoretical pI: Translated: 6.74; Mature: 6.74

Prosite motif: PS01280 GIDA_1; PS01281 GIDA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADQKQRVTVIGGGLAGTECAYQLSRRGVPVVLREMKPQKRSPAHKSDTLAELVCSNSLR
CCCCCCEEEEEECCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHCCCC
SDNPESAIGLLHAELRALGSLVLSAADANRVPAGDALAVERERFSAAITESLLRQPGVEL
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHE
VAGEVEQLPEDGPVVIATGPLTSDALTRELERHVGTRLYFYDSIAPILSADSIDMNVAFR
EHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCEEEEECCHHHHHCCCCCCEEEEEH
QSRYGKGGGDDYLNLPMTKDEYYRFIAEVKAGQKVVPHAFEEPKYFEGCLPIEVMAERGD
HHCCCCCCCCCCEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCHHHHCCCCC
DTLAYGPMKPVGLRDPRTGQEPYAVVQLRMEDVGGTSWNMVGFQTRLTWGEQKRIFSSFI
CCEEECCCCCCCCCCCCCCCCCEEEEEEEEHHCCCCCEEEEEEEEECCCCHHHHHHHHHC
PGLQQAEFLRMGQIHRNTFIDSPRLLAKDLSLKTEPRLYFAGQISGVEGYVESAACGYLV
CCHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHH
ALALHARLTGTEFVPPPATTAMGALLRHVTGEAHPPDYPHQPSNISFGIFSPLTGRMKKA
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCHHHHHHHH
EKRAAYSARAKQDLAAWLPHAGVPAAGAPEHVDQRSA
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCC
>Mature Secondary Structure 
ADQKQRVTVIGGGLAGTECAYQLSRRGVPVVLREMKPQKRSPAHKSDTLAELVCSNSLR
CCCCCEEEEEECCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHCCCC
SDNPESAIGLLHAELRALGSLVLSAADANRVPAGDALAVERERFSAAITESLLRQPGVEL
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHE
VAGEVEQLPEDGPVVIATGPLTSDALTRELERHVGTRLYFYDSIAPILSADSIDMNVAFR
EHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCEEEEECCHHHHHCCCCCCEEEEEH
QSRYGKGGGDDYLNLPMTKDEYYRFIAEVKAGQKVVPHAFEEPKYFEGCLPIEVMAERGD
HHCCCCCCCCCCEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCHHHHCCCCC
DTLAYGPMKPVGLRDPRTGQEPYAVVQLRMEDVGGTSWNMVGFQTRLTWGEQKRIFSSFI
CCEEECCCCCCCCCCCCCCCCCEEEEEEEEHHCCCCCEEEEEEEEECCCCHHHHHHHHHC
PGLQQAEFLRMGQIHRNTFIDSPRLLAKDLSLKTEPRLYFAGQISGVEGYVESAACGYLV
CCHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHH
ALALHARLTGTEFVPPPATTAMGALLRHVTGEAHPPDYPHQPSNISFGIFSPLTGRMKKA
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCHHHHHHHH
EKRAAYSARAKQDLAAWLPHAGVPAAGAPEHVDQRSA
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10844655; 12828649