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The map label for this gene is agaA33 [H]

Identifier: 108763188

GI number: 108763188

Start: 6001993

End: 6003840

Strand: Reverse

Name: agaA33 [H]

Synonym: MXAN_4799

Alternate gene names: 108763188

Gene position: 6003840-6001993 (Counterclockwise)

Preceding gene: 108763963

Following gene: 108757668

Centisome position: 65.69

GC content: 69.64

Gene sequence:

>1848_bases
ATGAGAAGAAAAGAGCTCCTGCACCGCGGGCTCGCGCTGGCACTCGCGCTGACGTCGCTGTCCGCCGGGGCGCAGGAAGC
ACCCGTGTTGCGAGGCTTCGACCTGGAGCGCCTGGAGCTGAATCCCGGCGCGGAGGGTTCGCTCCTCGTCGGCATGGGCG
AACTGCTTCCCGTGGGGGCGTTCCGCGCGACGGTGATGATGCACTACGCACATCAGCCGCTCGTCTACATGGACAACCTC
ATTCGCGAGCAGCCCGAGGTGGCCATCGTCTCTGGACGCACCACGGCGCATCTGGCTGCCGCGTATGCCCCGTTGGACTG
GCTCCAGGTGGGCCTGCAGGTTCCCATGGTGGCGTTCCAGGGCGGCGATGACGTTGGCATGGCGCGTTATGGGATTGCCG
TGCCCGCCAGTCAGGCGCTGTCCACGCCGGTGGTGAGCGCGCGCTTCGGCTTGCTGAGGCAGACGGAAGCGGGTGGGGTG
GACCTGGCCCTGGATGTGGCGGCGGGGCTGCCGCTGGGCAGCGAGGGGGCCTTTGCCCGCGATGATAGCGGGCTCCGCTT
GTCGCCGCGGGTGATGGTGGGACGGCACTTCGGCTTCATCCGCGCGGGCCTGGAGGTTGGCTATCTGCAGCGCCCGCGCG
TGCTGCTGACGGACCGCACGGGCGAAACCGAGGATGAGGTGGGCCAGGAGCTGCGCCTGGGCGTGGCGTTGGCCACGACG
GGCAAGCGGTTGCGCTGGGAGCTCAACGTCCGGGGCATGCTGCCGCTGACGGATCAGCCGACCTCGGTGGAGTTGCTTCC
TGGCGCTCGCTACCTGGTGGGCTCGTCGCTGGAGATGTTCGCGCTGGCGGGCGTGGGCGTGGGCGCGGCGCCCGGCACGC
CGCTGTTCCGGCTGATGGTGGGCGGGGCTTTCGGCAACGTGACGCCGCCGCGGGGCCCGGGTGAGTCCTCGGTCCGGTGT
GAGATGGGGCTGCCGCCCGAGGCGAAGATTCAAGAGTGCCCGGACATGGACGAGGACGGCGACGGCGTGCGTAACGCCGA
CGACAAGTGCCCGCTGGTGCCGGGAGACGTGGCGCGCCAGGGGTGCTCGGCTCAGGACACGGACGGCGACGGAATCGAAG
ACATGTTGGACGGCTGCCCGCTGGAGCACGGTCCCGCCGCGCGCCAGGGCTGCCCGATTCCGGACCAGGACGGTGACGAG
GTCCCCGACGAAATCGACAGTTGCCCGTCGGACCCGGGGCCCGCGGACAACCGGGGCTGCCCGGTGCGGGACACCGACGG
CGACGGCATCGACAACGACAAGGACGAGTGCCCGAACGAGGCCGGTCCCATCGAGCGCAATGGCTGCCCGGAGTCGGACA
CGGACAAGGATGGCGTGCCCAACCGCGCGGACAGCTGTGTGAATGAGCCGGGGGACGCCAAGAACCTGGGCTGCCCGCTG
CACATCCTGCCGCTGGTGGAGATTCGTCCGGACCGCCTGGTGGTGATGGGCAAGGTCTTCTTCGAGCCGACGCAGGCACG
CATCCAGAAGCGCTCCTATGAATTGCTGGATTGGGTGGCGCGCGTCATCCGAGAGCACCCGGAGATTCCGCTCGTCGTGG
TGGGCGCGCACACGGACGACCGGGGCTTCCCGGACGACAACCGCCGCCTGTCGCAGGGGCGTGCGGAGGCCGTGCGCCAG
TACCTCATCGGCCGGGATATCGCGCCCGAGCGGCTGAAGGCCCTGGGCTACGGTCAGGAGCGCCCCATCGACAGCAACGC
GACGTCGAACGGCCGTGAGAACAACCGCCGCGTGGAGTTCCTGCTGGCGGACCCACAGCAAGACAAGTCCGAGCGCGGTC
AGCGCTGA

Upstream 100 bases:

>100_bases
CGACCCCATTCCAGGTCGGACTTCGGTGTAGAGTGGAAAAGGGGGGCTGGCTTGAAACTGCGGGTCTTCCCGGGGTACCC
AGACGGCTTCGGGGAGAACC

Downstream 100 bases:

>100_bases
CGTGCGCCTCCGCGGAGAACCATCTCGATGAGAACGAATGCTCTGACGAAGGTGCTGATGGTGGCTGTGGGGCTCTGGGC
CCTGCCGGCCCTGCCGGGCC

Product: OmpA domain-containing protein

Products: NA

Alternate protein names: AgaraseA33 [H]

Number of amino acids: Translated: 615; Mature: 615

Protein sequence:

>615_residues
MRRKELLHRGLALALALTSLSAGAQEAPVLRGFDLERLELNPGAEGSLLVGMGELLPVGAFRATVMMHYAHQPLVYMDNL
IREQPEVAIVSGRTTAHLAAAYAPLDWLQVGLQVPMVAFQGGDDVGMARYGIAVPASQALSTPVVSARFGLLRQTEAGGV
DLALDVAAGLPLGSEGAFARDDSGLRLSPRVMVGRHFGFIRAGLEVGYLQRPRVLLTDRTGETEDEVGQELRLGVALATT
GKRLRWELNVRGMLPLTDQPTSVELLPGARYLVGSSLEMFALAGVGVGAAPGTPLFRLMVGGAFGNVTPPRGPGESSVRC
EMGLPPEAKIQECPDMDEDGDGVRNADDKCPLVPGDVARQGCSAQDTDGDGIEDMLDGCPLEHGPAARQGCPIPDQDGDE
VPDEIDSCPSDPGPADNRGCPVRDTDGDGIDNDKDECPNEAGPIERNGCPESDTDKDGVPNRADSCVNEPGDAKNLGCPL
HILPLVEIRPDRLVVMGKVFFEPTQARIQKRSYELLDWVARVIREHPEIPLVVVGAHTDDRGFPDDNRRLSQGRAEAVRQ
YLIGRDIAPERLKALGYGQERPIDSNATSNGRENNRRVEFLLADPQQDKSERGQR

Sequences:

>Translated_615_residues
MRRKELLHRGLALALALTSLSAGAQEAPVLRGFDLERLELNPGAEGSLLVGMGELLPVGAFRATVMMHYAHQPLVYMDNL
IREQPEVAIVSGRTTAHLAAAYAPLDWLQVGLQVPMVAFQGGDDVGMARYGIAVPASQALSTPVVSARFGLLRQTEAGGV
DLALDVAAGLPLGSEGAFARDDSGLRLSPRVMVGRHFGFIRAGLEVGYLQRPRVLLTDRTGETEDEVGQELRLGVALATT
GKRLRWELNVRGMLPLTDQPTSVELLPGARYLVGSSLEMFALAGVGVGAAPGTPLFRLMVGGAFGNVTPPRGPGESSVRC
EMGLPPEAKIQECPDMDEDGDGVRNADDKCPLVPGDVARQGCSAQDTDGDGIEDMLDGCPLEHGPAARQGCPIPDQDGDE
VPDEIDSCPSDPGPADNRGCPVRDTDGDGIDNDKDECPNEAGPIERNGCPESDTDKDGVPNRADSCVNEPGDAKNLGCPL
HILPLVEIRPDRLVVMGKVFFEPTQARIQKRSYELLDWVARVIREHPEIPLVVVGAHTDDRGFPDDNRRLSQGRAEAVRQ
YLIGRDIAPERLKALGYGQERPIDSNATSNGRENNRRVEFLLADPQQDKSERGQR
>Mature_615_residues
MRRKELLHRGLALALALTSLSAGAQEAPVLRGFDLERLELNPGAEGSLLVGMGELLPVGAFRATVMMHYAHQPLVYMDNL
IREQPEVAIVSGRTTAHLAAAYAPLDWLQVGLQVPMVAFQGGDDVGMARYGIAVPASQALSTPVVSARFGLLRQTEAGGV
DLALDVAAGLPLGSEGAFARDDSGLRLSPRVMVGRHFGFIRAGLEVGYLQRPRVLLTDRTGETEDEVGQELRLGVALATT
GKRLRWELNVRGMLPLTDQPTSVELLPGARYLVGSSLEMFALAGVGVGAAPGTPLFRLMVGGAFGNVTPPRGPGESSVRC
EMGLPPEAKIQECPDMDEDGDGVRNADDKCPLVPGDVARQGCSAQDTDGDGIEDMLDGCPLEHGPAARQGCPIPDQDGDE
VPDEIDSCPSDPGPADNRGCPVRDTDGDGIDNDKDECPNEAGPIERNGCPESDTDKDGVPNRADSCVNEPGDAKNLGCPL
HILPLVEIRPDRLVVMGKVFFEPTQARIQKRSYELLDWVARVIREHPEIPLVVVGAHTDDRGFPDDNRRLSQGRAEAVRQ
YLIGRDIAPERLKALGYGQERPIDSNATSNGRENNRRVEFLLADPQQDKSERGQR

Specific function: Alpha-agarase. Hydrolyzes agarose, agarohexaose, neoagarohexaose and porphyran. Hydrolysis of porphyran by this enzyme improves its antioxidant activity. Does not hydrolyze kappa-carrageenan, iota-carrageenen or lambda-carrageenan [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CBM6 (carbohydrate binding type-6) domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=105, Percent_Identity=38.0952380952381, Blast_Score=74, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005084
- InterPro:   IPR008979
- InterPro:   IPR003367 [H]

Pfam domain/function: PF03422 CBM_6; PF02412 TSP_3 [H]

EC number: =3.2.1.158 [H]

Molecular weight: Translated: 66082; Mature: 66082

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRKELLHRGLALALALTSLSAGAQEAPVLRGFDLERLELNPGAEGSLLVGMGELLPVGA
CCHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCEEEECCCCCCCCEEEECHHHHHHHH
FRATVMMHYAHQPLVYMDNLIREQPEVAIVSGRTTAHLAAAYAPLDWLQVGLQVPMVAFQ
HHHHHHHHHCCCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHCCHHHHHHHHHCCEEEEC
GGDDVGMARYGIAVPASQALSTPVVSARFGLLRQTEAGGVDLALDVAAGLPLGSEGAFAR
CCCCCCHHHHCEECCCHHHHCCCHHHHHHHHHEECCCCCCEEEEEHHCCCCCCCCCCCCC
DDSGLRLSPRVMVGRHFGFIRAGLEVGYLQRPRVLLTDRTGETEDEVGQELRLGVALATT
CCCCCEECCCEEEHHCHHHHHHCCEECCCCCCEEEEECCCCCCHHHHHHHHHHEEEEECC
GKRLRWELNVRGMLPLTDQPTSVELLPGARYLVGSSLEMFALAGVGVGAAPGTPLFRLMV
CCEEEEEEECCEEECCCCCCCCEEECCCCHHHHCCCCCEEHEECCCCCCCCCCHHHHHHH
GGAFGNVTPPRGPGESSVRCEMGLPPEAKIQECPDMDEDGDGVRNADDKCPLVPGDVARQ
CCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHC
GCSAQDTDGDGIEDMLDGCPLEHGPAARQGCPIPDQDGDEVPDEIDSCPSDPGPADNRGC
CCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCC
PVRDTDGDGIDNDKDECPNEAGPIERNGCPESDTDKDGVPNRADSCVNEPGDAKNLGCPL
CCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCE
HILPLVEIRPDRLVVMGKVFFEPTQARIQKRSYELLDWVARVIREHPEIPLVVVGAHTDD
EEEEEEEECCCCEEEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC
RGFPDDNRRLSQGRAEAVRQYLIGRDIAPERLKALGYGQERPIDSNATSNGRENNRRVEF
CCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEE
LLADPQQDKSERGQR
EEECCCCCHHHCCCC
>Mature Secondary Structure
MRRKELLHRGLALALALTSLSAGAQEAPVLRGFDLERLELNPGAEGSLLVGMGELLPVGA
CCHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCEEEECCCCCCCCEEEECHHHHHHHH
FRATVMMHYAHQPLVYMDNLIREQPEVAIVSGRTTAHLAAAYAPLDWLQVGLQVPMVAFQ
HHHHHHHHHCCCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHCCHHHHHHHHHCCEEEEC
GGDDVGMARYGIAVPASQALSTPVVSARFGLLRQTEAGGVDLALDVAAGLPLGSEGAFAR
CCCCCCHHHHCEECCCHHHHCCCHHHHHHHHHEECCCCCCEEEEEHHCCCCCCCCCCCCC
DDSGLRLSPRVMVGRHFGFIRAGLEVGYLQRPRVLLTDRTGETEDEVGQELRLGVALATT
CCCCCEECCCEEEHHCHHHHHHCCEECCCCCCEEEEECCCCCCHHHHHHHHHHEEEEECC
GKRLRWELNVRGMLPLTDQPTSVELLPGARYLVGSSLEMFALAGVGVGAAPGTPLFRLMV
CCEEEEEEECCEEECCCCCCCCEEECCCCHHHHCCCCCEEHEECCCCCCCCCCHHHHHHH
GGAFGNVTPPRGPGESSVRCEMGLPPEAKIQECPDMDEDGDGVRNADDKCPLVPGDVARQ
CCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHC
GCSAQDTDGDGIEDMLDGCPLEHGPAARQGCPIPDQDGDEVPDEIDSCPSDPGPADNRGC
CCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCC
PVRDTDGDGIDNDKDECPNEAGPIERNGCPESDTDKDGVPNRADSCVNEPGDAKNLGCPL
CCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCE
HILPLVEIRPDRLVVMGKVFFEPTQARIQKRSYELLDWVARVIREHPEIPLVVVGAHTDD
EEEEEEEECCCCEEEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC
RGFPDDNRRLSQGRAEAVRQYLIGRDIAPERLKALGYGQERPIDSNATSNGRENNRRVEF
CCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEE
LLADPQQDKSERGQR
EEECCCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA