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The map label for this gene is secD [H]

Identifier: 108762794

GI number: 108762794

Start: 5878759

End: 5880531

Strand: Reverse

Name: secD [H]

Synonym: MXAN_4691

Alternate gene names: 108762794

Gene position: 5880531-5878759 (Counterclockwise)

Preceding gene: 108757243

Following gene: 108763901

Centisome position: 64.34

GC content: 66.78

Gene sequence:

>1773_bases
ATGGACCGCGGCTGGTGGTGGAAGTTCGGACTCATCGTCGCGGTGACGCTGGGCTGCATCTGGTTCCTCATCCCGACCTA
CTACTCGCTCGTCGTTCTCGACCGGGAGCAGCGCAACAACCTGGCCGTGCTCGAGGAGCGGATGCCCGCCTGGGCGCCTC
CCGCGAAGTACCGCCTGAACCTGGGGCTGGACCTCCAGGGCGGCATCCACATGGTGATGCGGGTGGACACCAAGACGGCG
CTCCAGAAGCGGACCGAGCGCCGCGCGCAGCAGATTGTCAATTACGTCAATGACAAGAAGCTGGGCGAGGTGTCGGCGGA
CACGGACCCGGAGAAGCTCGAGGTCACCCTGACGGCGAAGGACCCGGGGACCATGGACGCCATCCAGAAGGAGGTCCTGG
CCACCTTCACTGACTTCAAGGAAGTCAGCCGCAGCGGCGCCTCGCTGACGCTGGTGCAGGACGAGAGTCAGGCCAACGTC
TTCCGGACCGAAGCGGTGGACCAGGCGATGCTCGTCATCCGCCGCCGCATCGACAAGTGGGGCGTGGCGGAAGTGGATGT
GCGCAAGCTGGGCGCCGACTCCATCCAGATTTCGCTGCCGGGCCGCAGCAACCCGGAGCAGGCGAAGGAGCTGGTGGGGA
CCACCGCGCAGCTCGAGTTCCGGATGGTGGATGACTCCAACCCGCAGTTCTTCGCGCAGCTGCTCCAGGCCACCCCGCCG
CCGGCTGGCAGCGAAATCACGCTGACGACGGAGGGCGGCTTCCCGCAGCTCCAGGCCCCCACGCGTGAGGCCATCACCGA
GTACACGAAGGACAAGGTGCCGGAGAACCGGGTGGTGCTCACCGAGTGCATCGCCAACCCGGTGAAGAAGAACGAGTGCA
CCTCGTACCGCTCCTACCTGCTGGACAAGAACGTGCCGCTGACCGGCGAGAGCCTGGCGAGCGCGGACGCGAACATCAGC
CAGCTCAACGAGCCGGAGGTGAACATCTCCTTCGACCCCGCGGGCGCGCGCGAGTTCGAGCGGCTGACCGAGCAGGGCGT
GGGCCGCCGCATGGCCATCGTGCTGGACGAGAACGTCCAGACGGCGCCGAACATCAACGAGAAGATCAGCGGCGGTTCGG
CCCGCATCACCATGGGCCGCATGGGTGGCCGCACCTTCGAGGAGTGGCTGGGCGAGGCCCAGACGCTGGCGCTGGTGCTC
AAGGCCGGCGCGCTGCCTGCCCCTGTGACGGTGGGTGAGATTCGTCAGGTTGGCGCCAGCCTGGGTGACGAGCTCATCCG
GAAGGGTGGCATGGCGGCGGTGCTGGGCCTGGGCCTGGTCATCCTCTTCATGGCCATCTACTACAGGGCCTCCGGCCTCA
TCGCGGACCTCGCGCTGGTGCTCAACGGCCTGCTCATCCTGGCGGGACTGGCCTTCTTCAACGCCACGCTGACGCTGCCG
GGCATCGCCGGCTTCGTGCTGACGCTGGGGGTGGCGGTGGATGCCAACGTGCTCATCAACGAGCGCATCCGCGAGGAGCT
GGGGCATGGCAAGTCGGCCCGGGCGGCGGTGGACCAGGGCTACGACCGGGCCTTCTGGACCATCTTCGACTCGCACGTGA
CGGCGCTCATCTCCGCCTTCATCCTGTTCTTCACGGGAACCGGACCGGTGCGAGGCTTCGCCACCACGCTCATCATCGGC
CTGCTGGCGTCGCTGTTCACGTCCATCACGGTGACGCGAGTCATCATGACCTACTTCGTCCACGGTCGTAACGCGAAGGT
CGTCTCCGTCTGA

Upstream 100 bases:

>100_bases
TCCGCGTGCTCAAGACGGCCGTCAGCGCCAAGGGCGCGGTGGCGGAAGGCACGCCCGCGGCCCCCGCGACGGCGGCCGGA
GAGAAGAAGGAGGAGAAGTG

Downstream 100 bases:

>100_bases
CCGGCCGGAGTCCGGGAACCGTCATGCAGATTTTCAAGAACAAGACGAACATCGACTTCATCAGCAAGCGCAAGCCCGCG
CTGTTTATCTCCACGCTGCT

Product: protein-export membrane protein SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 590; Mature: 590

Protein sequence:

>590_residues
MDRGWWWKFGLIVAVTLGCIWFLIPTYYSLVVLDREQRNNLAVLEERMPAWAPPAKYRLNLGLDLQGGIHMVMRVDTKTA
LQKRTERRAQQIVNYVNDKKLGEVSADTDPEKLEVTLTAKDPGTMDAIQKEVLATFTDFKEVSRSGASLTLVQDESQANV
FRTEAVDQAMLVIRRRIDKWGVAEVDVRKLGADSIQISLPGRSNPEQAKELVGTTAQLEFRMVDDSNPQFFAQLLQATPP
PAGSEITLTTEGGFPQLQAPTREAITEYTKDKVPENRVVLTECIANPVKKNECTSYRSYLLDKNVPLTGESLASADANIS
QLNEPEVNISFDPAGAREFERLTEQGVGRRMAIVLDENVQTAPNINEKISGGSARITMGRMGGRTFEEWLGEAQTLALVL
KAGALPAPVTVGEIRQVGASLGDELIRKGGMAAVLGLGLVILFMAIYYRASGLIADLALVLNGLLILAGLAFFNATLTLP
GIAGFVLTLGVAVDANVLINERIREELGHGKSARAAVDQGYDRAFWTIFDSHVTALISAFILFFTGTGPVRGFATTLIIG
LLASLFTSITVTRVIMTYFVHGRNAKVVSV

Sequences:

>Translated_590_residues
MDRGWWWKFGLIVAVTLGCIWFLIPTYYSLVVLDREQRNNLAVLEERMPAWAPPAKYRLNLGLDLQGGIHMVMRVDTKTA
LQKRTERRAQQIVNYVNDKKLGEVSADTDPEKLEVTLTAKDPGTMDAIQKEVLATFTDFKEVSRSGASLTLVQDESQANV
FRTEAVDQAMLVIRRRIDKWGVAEVDVRKLGADSIQISLPGRSNPEQAKELVGTTAQLEFRMVDDSNPQFFAQLLQATPP
PAGSEITLTTEGGFPQLQAPTREAITEYTKDKVPENRVVLTECIANPVKKNECTSYRSYLLDKNVPLTGESLASADANIS
QLNEPEVNISFDPAGAREFERLTEQGVGRRMAIVLDENVQTAPNINEKISGGSARITMGRMGGRTFEEWLGEAQTLALVL
KAGALPAPVTVGEIRQVGASLGDELIRKGGMAAVLGLGLVILFMAIYYRASGLIADLALVLNGLLILAGLAFFNATLTLP
GIAGFVLTLGVAVDANVLINERIREELGHGKSARAAVDQGYDRAFWTIFDSHVTALISAFILFFTGTGPVRGFATTLIIG
LLASLFTSITVTRVIMTYFVHGRNAKVVSV
>Mature_590_residues
MDRGWWWKFGLIVAVTLGCIWFLIPTYYSLVVLDREQRNNLAVLEERMPAWAPPAKYRLNLGLDLQGGIHMVMRVDTKTA
LQKRTERRAQQIVNYVNDKKLGEVSADTDPEKLEVTLTAKDPGTMDAIQKEVLATFTDFKEVSRSGASLTLVQDESQANV
FRTEAVDQAMLVIRRRIDKWGVAEVDVRKLGADSIQISLPGRSNPEQAKELVGTTAQLEFRMVDDSNPQFFAQLLQATPP
PAGSEITLTTEGGFPQLQAPTREAITEYTKDKVPENRVVLTECIANPVKKNECTSYRSYLLDKNVPLTGESLASADANIS
QLNEPEVNISFDPAGAREFERLTEQGVGRRMAIVLDENVQTAPNINEKISGGSARITMGRMGGRTFEEWLGEAQTLALVL
KAGALPAPVTVGEIRQVGASLGDELIRKGGMAAVLGLGLVILFMAIYYRASGLIADLALVLNGLLILAGLAFFNATLTLP
GIAGFVLTLGVAVDANVLINERIREELGHGKSARAAVDQGYDRAFWTIFDSHVTALISAFILFFTGTGPVRGFATTLIIG
LLASLFTSITVTRVIMTYFVHGRNAKVVSV

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=567, Percent_Identity=34.5679012345679, Blast_Score=272, Evalue=5e-74,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 64445; Mature: 64445

Theoretical pI: Translated: 5.46; Mature: 5.46

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRGWWWKFGLIVAVTLGCIWFLIPTYYSLVVLDREQRNNLAVLEERMPAWAPPAKYRLN
CCCCEEHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHCCCCCCCCCCEEEE
LGLDLQGGIHMVMRVDTKTALQKRTERRAQQIVNYVNDKKLGEVSADTDPEKLEVTLTAK
ECEECCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEC
DPGTMDAIQKEVLATFTDFKEVSRSGASLTLVQDESQANVFRTEAVDQAMLVIRRRIDKW
CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHC
GVAEVDVRKLGADSIQISLPGRSNPEQAKELVGTTAQLEFRMVDDSNPQFFAQLLQATPP
CCCHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHCCCC
PAGSEITLTTEGGFPQLQAPTREAITEYTKDKVPENRVVLTECIANPVKKNECTSYRSYL
CCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEHHHHHCCCCCCHHHHHHHHHH
LDKNVPLTGESLASADANISQLNEPEVNISFDPAGAREFERLTEQGVGRRMAIVLDENVQ
HCCCCCCCCCHHHHCCCCHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEEECCCC
TAPNINEKISGGSARITMGRMGGRTFEEWLGEAQTLALVLKAGALPAPVTVGEIRQVGAS
CCCCCCHHCCCCCEEEEECCCCCCHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
LGDELIRKGGMAAVLGLGLVILFMAIYYRASGLIADLALVLNGLLILAGLAFFNATLTLP
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GIAGFVLTLGVAVDANVLINERIREELGHGKSARAAVDQGYDRAFWTIFDSHVTALISAF
HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHH
ILFFTGTGPVRGFATTLIIGLLASLFTSITVTRVIMTYFVHGRNAKVVSV
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEC
>Mature Secondary Structure
MDRGWWWKFGLIVAVTLGCIWFLIPTYYSLVVLDREQRNNLAVLEERMPAWAPPAKYRLN
CCCCEEHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHCCCCCCCCCCEEEE
LGLDLQGGIHMVMRVDTKTALQKRTERRAQQIVNYVNDKKLGEVSADTDPEKLEVTLTAK
ECEECCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEC
DPGTMDAIQKEVLATFTDFKEVSRSGASLTLVQDESQANVFRTEAVDQAMLVIRRRIDKW
CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHC
GVAEVDVRKLGADSIQISLPGRSNPEQAKELVGTTAQLEFRMVDDSNPQFFAQLLQATPP
CCCHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHCCCC
PAGSEITLTTEGGFPQLQAPTREAITEYTKDKVPENRVVLTECIANPVKKNECTSYRSYL
CCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEHHHHHCCCCCCHHHHHHHHHH
LDKNVPLTGESLASADANISQLNEPEVNISFDPAGAREFERLTEQGVGRRMAIVLDENVQ
HCCCCCCCCCHHHHCCCCHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEEECCCC
TAPNINEKISGGSARITMGRMGGRTFEEWLGEAQTLALVLKAGALPAPVTVGEIRQVGAS
CCCCCCHHCCCCCEEEEECCCCCCHHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
LGDELIRKGGMAAVLGLGLVILFMAIYYRASGLIADLALVLNGLLILAGLAFFNATLTLP
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GIAGFVLTLGVAVDANVLINERIREELGHGKSARAAVDQGYDRAFWTIFDSHVTALISAF
HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHH
ILFFTGTGPVRGFATTLIIGLLASLFTSITVTRVIMTYFVHGRNAKVVSV
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]