| Definition | Myxococcus xanthus DK 1622 chromosome, complete genome. |
|---|---|
| Accession | NC_008095 |
| Length | 9,139,763 |
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The map label for this gene is slt [H]
Identifier: 108762740
GI number: 108762740
Start: 255625
End: 258021
Strand: Direct
Name: slt [H]
Synonym: MXAN_0210
Alternate gene names: 108762740
Gene position: 255625-258021 (Clockwise)
Preceding gene: 108760488
Following gene: 108759272
Centisome position: 2.8
GC content: 72.8
Gene sequence:
>2397_bases ATGGACGGACTTCGAGCAGGTGCCGTGGTGTTCCTGGCGTGCGCGGGCATGCTGGGAGCAGGTCCTTCCTGGGCGCAGGC GCCCCTGGAGGAAGAGCCCGGCGAGGTGCTTTCCGAGGACCAGTTGGAAGCACTGCTCGACTCACCGGTGGCGCAGCCTT CCGACGGTGAGCTGTCCACCGCGGCCTTCGGACCGGAGCGGTTGGCGCCGTACTTCGTGGAAGGCACCCTGGCAAAGGCC CACGCGGAGTTCCGGCGCGGGCGCTACGCGCGGGCGCGGAGCCTGCTGGCCCATGAGGAGGCCACGCCGCAGGTTCGCTT CCTCAGGGCGCAGTGCGCGCTGCTGGCGCGCAACCACGCGGTGGCGGCCGAGGAGTTCGCCGCGCTGGCGGACGGCTACG GCGCGCTGCGCGACCACAGCCTGCTGCGGGCCGCCCAGGCCAACGAGCGGCTGCGCAAGCTGGACACGGCCGCCGGGCAG TACCGCGGCGTGAGCCCGGGCTCGCCGCTGTACCCGGAGGCGCGCTTCAGCCTGTCGCGGGTGCTCCAGCGGCGGGGGGA CATTCCGGGCGCGTTGACGGCGCTCCAGGAGCTCATCGACAGCCGCCAGTCGCGAGGGCCGGACGCGCTCCGGATGAAGG CGCTGCTGGCCATCTGCGACCTGGCGCGCGCGCAAGGGCAGTACAACGCCGAGCACCGCGCGCTGCTGGAGGTGTGGGCC ACCAGTCCGCTGTCGAACGAGGCGCGCCGCGCCGAGAAGCGGTTGAAGGGGTTGCCGCTGCCCCTCAAGTGGCGGGTGCG CCGCGCGGAGGCGCTGGTGGAGCTGCACCGCAACCATGCCGGCATGGCGCTGCTGGACAAGGTGCTGCCGCACCTGGAGA TGCCGGACGAGCTGGCCTGCCGCGCGCACCTCACCTACGGCCGGGCGCTGCGCAAGGAGCGCAAGCACCGCCGGGCCATC GAGGCGCTGGAGCCCATGGTGGTGGGCTGCACCGCGTCCGAGCAGCGGCCGCAGGCGCTCTACATCCTGGGCTACTCCCA GTCGGTGGTGGAGCCGAAGGCGGCCGTCACCACCTATGCCATGCTCGCCCGGGACTACCCGGAGCATGGCTACGCGGATG ACGCGCTCTTCTTCGAGGCGTGGTTGCTCCAGCGCACGGGCGACGTGGAGACGGCCCTGGCGCGCTACGAAGAGGCCGCG CGGCGCTACCCGGCGGGGAACTTCGCGTCGGAGTCGCTCTTCCGTGCCTTCTGGCTGCACTCCCGCAAGGCCAACGCCCC GGCGGCCCTGGCCGCGCTGAAGGCGGTGGAGAACCTGCCCGAGGCGGCACGCACGGACGAGGCGCTGTGGCGCTCGCGGT ACTGGCGTGCGCGCATGCAGGAGTCCGGCGCCTCGGCGCAGGCGGCGCTCGATGCGTACGCGCACATCGCCGCCGAGCGC CCCGCGGCCTGGTACGGGATGCTGGCCCGCTCACGGCTCGCGCTGCTCTCACCGGAGCGCGTGGCGCGGCTGTACCCCAA GCCCGTGCCTCCCGAGGCCATGGAGGGCACCGGCGGCTCCGGCCGCGATGACGCCCCGGCGGACGAAGTGGTGGAGGAGG TGGGCGAGCCCGAGGAGATCTGGCCGCTGCCGCCCGGCGCGCTGGCGAAGGACGCGCGCTTCAACGCGGGCGTGGAGCTG ATGCGCCTGGGGCTGCCCGGCGCGGTGGATGAGTTCCTCGCCGTGGATGCGCGCGCGCTGCCCGAGGCCCCGGCGCGGCT GCTGTATCAGACGCTGAAGCGCACCGGCCGCAATCGGGCCGCGCGGCAGGTGGCGCGCACCTCGCTGAAGCAGGAGGTGC ACGGTCCGCTGAGCGCCGCGTCCCGTCCCATCTGGGAGGCCACCTGGCCGCTGGCGTACCGCTCGTCCATTGCCCGTTAC GCGCGGGCCCATCGCGTGGACCCCGACCTGCTCCAGGGCCTCATCCGCGAGGAGAGCCGCTTCAATGCCCGCGCGCGTTC GGCCACGGGCGCGCTGGGCCTGGCGCAGTTGATGCCCACCACGGCGAGACAGGTGGCGGACTCACTGGACATGCCGATGC CGGGTGAGTCCGCGTTGCTCCAGCCTCACACGAACATCCGCCTGGGTGCGGCGTACCTGGGACAACTGGTCAAACACTTC GGAGGCAACGTGGCCTACGCGGTGGCGGCCTACAACGCCGGGCCGCGCGCGGTGGAGCGCTGGCGGCATGCGCTGCCCGA AGCGGAGCTCGACGAGTGGGTGGAGCACATCGGCTTCGAGGAGACGCGCGAGTACGTGAAGAAGGTGCTCGGCAGCTACA GCGCCTACAAGCTGCTCTACGCGGACGAGCCCGCGCTGCTGAGGGACCTGCGCCTCAGTGACGCCAGCCGGCGGTGA
Upstream 100 bases:
>100_bases GCTGGATGACGGGCGCGCGGAAAGTCATGTGAGGTACCCGTCCCAATCGCACTCCGAGTGCCGATGCATTGCCGCCCCTG GATTCAAGACGAGGGCAGTC
Downstream 100 bases:
>100_bases AGCGCGGCGTCCCAGCGGAACCTCCAGGCGACACGGTGCCGTGCCGCCCGGAGGAGGGGACTCAGAAGTTGAGGCCGCCG TCCACGTCGATGGTGCGGCC
Product: transglycosylase SLT domain-containing protein
Products: 1,6-Anhydrobond [C]
Alternate protein names: Exomuramidase; Peptidoglycan lytic exotransglycosylase; Slt70 [H]
Number of amino acids: Translated: 798; Mature: 798
Protein sequence:
>798_residues MDGLRAGAVVFLACAGMLGAGPSWAQAPLEEEPGEVLSEDQLEALLDSPVAQPSDGELSTAAFGPERLAPYFVEGTLAKA HAEFRRGRYARARSLLAHEEATPQVRFLRAQCALLARNHAVAAEEFAALADGYGALRDHSLLRAAQANERLRKLDTAAGQ YRGVSPGSPLYPEARFSLSRVLQRRGDIPGALTALQELIDSRQSRGPDALRMKALLAICDLARAQGQYNAEHRALLEVWA TSPLSNEARRAEKRLKGLPLPLKWRVRRAEALVELHRNHAGMALLDKVLPHLEMPDELACRAHLTYGRALRKERKHRRAI EALEPMVVGCTASEQRPQALYILGYSQSVVEPKAAVTTYAMLARDYPEHGYADDALFFEAWLLQRTGDVETALARYEEAA RRYPAGNFASESLFRAFWLHSRKANAPAALAALKAVENLPEAARTDEALWRSRYWRARMQESGASAQAALDAYAHIAAER PAAWYGMLARSRLALLSPERVARLYPKPVPPEAMEGTGGSGRDDAPADEVVEEVGEPEEIWPLPPGALAKDARFNAGVEL MRLGLPGAVDEFLAVDARALPEAPARLLYQTLKRTGRNRAARQVARTSLKQEVHGPLSAASRPIWEATWPLAYRSSIARY ARAHRVDPDLLQGLIREESRFNARARSATGALGLAQLMPTTARQVADSLDMPMPGESALLQPHTNIRLGAAYLGQLVKHF GGNVAYAVAAYNAGPRAVERWRHALPEAELDEWVEHIGFEETREYVKKVLGSYSAYKLLYADEPALLRDLRLSDASRR
Sequences:
>Translated_798_residues MDGLRAGAVVFLACAGMLGAGPSWAQAPLEEEPGEVLSEDQLEALLDSPVAQPSDGELSTAAFGPERLAPYFVEGTLAKA HAEFRRGRYARARSLLAHEEATPQVRFLRAQCALLARNHAVAAEEFAALADGYGALRDHSLLRAAQANERLRKLDTAAGQ YRGVSPGSPLYPEARFSLSRVLQRRGDIPGALTALQELIDSRQSRGPDALRMKALLAICDLARAQGQYNAEHRALLEVWA TSPLSNEARRAEKRLKGLPLPLKWRVRRAEALVELHRNHAGMALLDKVLPHLEMPDELACRAHLTYGRALRKERKHRRAI EALEPMVVGCTASEQRPQALYILGYSQSVVEPKAAVTTYAMLARDYPEHGYADDALFFEAWLLQRTGDVETALARYEEAA RRYPAGNFASESLFRAFWLHSRKANAPAALAALKAVENLPEAARTDEALWRSRYWRARMQESGASAQAALDAYAHIAAER PAAWYGMLARSRLALLSPERVARLYPKPVPPEAMEGTGGSGRDDAPADEVVEEVGEPEEIWPLPPGALAKDARFNAGVEL MRLGLPGAVDEFLAVDARALPEAPARLLYQTLKRTGRNRAARQVARTSLKQEVHGPLSAASRPIWEATWPLAYRSSIARY ARAHRVDPDLLQGLIREESRFNARARSATGALGLAQLMPTTARQVADSLDMPMPGESALLQPHTNIRLGAAYLGQLVKHF GGNVAYAVAAYNAGPRAVERWRHALPEAELDEWVEHIGFEETREYVKKVLGSYSAYKLLYADEPALLRDLRLSDASRR >Mature_798_residues MDGLRAGAVVFLACAGMLGAGPSWAQAPLEEEPGEVLSEDQLEALLDSPVAQPSDGELSTAAFGPERLAPYFVEGTLAKA HAEFRRGRYARARSLLAHEEATPQVRFLRAQCALLARNHAVAAEEFAALADGYGALRDHSLLRAAQANERLRKLDTAAGQ YRGVSPGSPLYPEARFSLSRVLQRRGDIPGALTALQELIDSRQSRGPDALRMKALLAICDLARAQGQYNAEHRALLEVWA TSPLSNEARRAEKRLKGLPLPLKWRVRRAEALVELHRNHAGMALLDKVLPHLEMPDELACRAHLTYGRALRKERKHRRAI EALEPMVVGCTASEQRPQALYILGYSQSVVEPKAAVTTYAMLARDYPEHGYADDALFFEAWLLQRTGDVETALARYEEAA RRYPAGNFASESLFRAFWLHSRKANAPAALAALKAVENLPEAARTDEALWRSRYWRARMQESGASAQAALDAYAHIAAER PAAWYGMLARSRLALLSPERVARLYPKPVPPEAMEGTGGSGRDDAPADEVVEEVGEPEEIWPLPPGALAKDARFNAGVEL MRLGLPGAVDEFLAVDARALPEAPARLLYQTLKRTGRNRAARQVARTSLKQEVHGPLSAASRPIWEATWPLAYRSSIARY ARAHRVDPDLLQGLIREESRFNARARSATGALGLAQLMPTTARQVADSLDMPMPGESALLQPHTNIRLGAAYLGQLVKHF GGNVAYAVAAYNAGPRAVERWRHALPEAELDEWVEHIGFEETREYVKKVLGSYSAYKLLYADEPALLRDLRLSDASRR
Specific function: Murein-degrading enzyme. Catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N- acetylglucosamine residues in peptidoglycan. May play a role in recycling of muropeptides during cell elongation and/or cell division [H]
COG id: COG0741
COG function: function code M; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)
Gene ontology:
Cell location: Periplasm. Note=Tightly associated with the murein sacculus (By similarity) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transglycosylase slt family [H]
Homologues:
Organism=Escherichia coli, GI87082441, Length=221, Percent_Identity=32.1266968325792, Blast_Score=108, Evalue=1e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016026 - InterPro: IPR008258 - InterPro: IPR012289 - InterPro: IPR008939 - InterPro: IPR000189 [H]
Pfam domain/function: PF01464 SLT [H]
EC number: 3.2.1.- [C]
Molecular weight: Translated: 87892; Mature: 87892
Theoretical pI: Translated: 8.58; Mature: 8.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDGLRAGAVVFLACAGMLGAGPSWAQAPLEEEPGEVLSEDQLEALLDSPVAQPSDGELST CCCHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCH AAFGPERLAPYFVEGTLAKAHAEFRRGRYARARSLLAHEEATPQVRFLRAQCALLARNHA HCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH VAAEEFAALADGYGALRDHSLLRAAQANERLRKLDTAAGQYRGVSPGSPLYPEARFSLSR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH VLQRRGDIPGALTALQELIDSRQSRGPDALRMKALLAICDLARAQGQYNAEHRALLEVWA HHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH TSPLSNEARRAEKRLKGLPLPLKWRVRRAEALVELHRNHAGMALLDKVLPHLEMPDELAC CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHH RAHLTYGRALRKERKHRRAIEALEPMVVGCTASEQRPQALYILGYSQSVVEPKAAVTTYA HHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCEEEEEECCHHHHCCHHHHHHHH MLARDYPEHGYADDALFFEAWLLQRTGDVETALARYEEAARRYPAGNFASESLFRAFWLH HHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH SRKANAPAALAALKAVENLPEAARTDEALWRSRYWRARMQESGASAQAALDAYAHIAAER CCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC PAAWYGMLARSRLALLSPERVARLYPKPVPPEAMEGTGGSGRDDAPADEVVEEVGEPEEI CHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHCCCCCCCCCCCCCHHHHHHHCCCCCCC WPLPPGALAKDARFNAGVELMRLGLPGAVDEFLAVDARALPEAPARLLYQTLKRTGRNRA CCCCCCCHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCHHHH ARQVARTSLKQEVHGPLSAASRPIWEATWPLAYRSSIARYARAHRVDPDLLQGLIREESR HHHHHHHHHHHHHCCCHHHHCCCCHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH FNARARSATGALGLAQLMPTTARQVADSLDMPMPGESALLQPHTNIRLGAAYLGQLVKHF HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCEECHHHHHHHHHHH GGNVAYAVAAYNAGPRAVERWRHALPEAELDEWVEHIGFEETREYVKKVLGSYSAYKLLY CCCEEEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHCCHHHEEEEE ADEPALLRDLRLSDASRR CCCHHHHHHHHHCCCCCC >Mature Secondary Structure MDGLRAGAVVFLACAGMLGAGPSWAQAPLEEEPGEVLSEDQLEALLDSPVAQPSDGELST CCCHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCH AAFGPERLAPYFVEGTLAKAHAEFRRGRYARARSLLAHEEATPQVRFLRAQCALLARNHA HCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH VAAEEFAALADGYGALRDHSLLRAAQANERLRKLDTAAGQYRGVSPGSPLYPEARFSLSR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH VLQRRGDIPGALTALQELIDSRQSRGPDALRMKALLAICDLARAQGQYNAEHRALLEVWA HHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH TSPLSNEARRAEKRLKGLPLPLKWRVRRAEALVELHRNHAGMALLDKVLPHLEMPDELAC CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHH RAHLTYGRALRKERKHRRAIEALEPMVVGCTASEQRPQALYILGYSQSVVEPKAAVTTYA HHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCEEEEEECCHHHHCCHHHHHHHH MLARDYPEHGYADDALFFEAWLLQRTGDVETALARYEEAARRYPAGNFASESLFRAFWLH HHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH SRKANAPAALAALKAVENLPEAARTDEALWRSRYWRARMQESGASAQAALDAYAHIAAER CCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC PAAWYGMLARSRLALLSPERVARLYPKPVPPEAMEGTGGSGRDDAPADEVVEEVGEPEEI CHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHCCCCCCCCCCCCCHHHHHHHCCCCCCC WPLPPGALAKDARFNAGVELMRLGLPGAVDEFLAVDARALPEAPARLLYQTLKRTGRNRA CCCCCCCHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCHHHH ARQVARTSLKQEVHGPLSAASRPIWEATWPLAYRSSIARYARAHRVDPDLLQGLIREESR HHHHHHHHHHHHHCCCHHHHCCCCHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH FNARARSATGALGLAQLMPTTARQVADSLDMPMPGESALLQPHTNIRLGAAYLGQLVKHF HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCEECHHHHHHHHHHH GGNVAYAVAAYNAGPRAVERWRHALPEAELDEWVEHIGFEETREYVKKVLGSYSAYKLLY CCCEEEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHCCHHHEEEEE ADEPALLRDLRLSDASRR CCCHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Muramic Acid Residue (N-Acetylmuramic Acid And N-Acetylglucosamine Residues) [C]
Specific reaction: Cleavage Of The Beta-1,4-Glycosidic Bond Between N-Acetylmuramic Acid And N-Acetylglucosamine Residues, Thereby Conserving The Energy In A Newly Synthesized 1,6-Anhydrobond In The Muramic Acid Residue. [C]
General reaction: Cleavage Of The Beta-1,4-Glycosidic Bond [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]