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The map label for this gene is ydgC [H]

Identifier: 108759272

GI number: 108759272

Start: 261610

End: 262353

Strand: Direct

Name: ydgC [H]

Synonym: MXAN_0214

Alternate gene names: 108759272

Gene position: 261610-262353 (Clockwise)

Preceding gene: 108762740

Following gene: 108763242

Centisome position: 2.86

GC content: 68.15

Gene sequence:

>744_bases
ATGAATCGGGCTTCATCTTCTCAAGACCGCTCCGGACCCGTCACGCCGCGAGGCCAGAAGACGCGTGCGAAGCTGTTGAA
GGCCGCGGAGTCGGTCTTCGGTGAGAAGGGCTACGAGCGCGCCTCCATCGCGGACATCACGCGCAAGGGTGGCGTGGCGC
TCGGGACGTTCTACGTCTACTTCCCCGACAAGCAGTCCATCTTCGTCGAAGTGGTGGACGAACTGGGCACGCGCCTGCGC
CGGCTCATCGCCGAGTCCGTGGCCGGCTGCGAGGACCGCGTCGACGTGGAGCGCCAGGGCCTGCGCACCTTCTTCCAGTT
CGTGCGGCAGCACCCCAATCTCTATCGCGTGGTGCGCCAGGCGGAGTTCGTGGATGAGGCCTGCTACCGCCGCTACTACG
ACCGCTTCGCTCGCGGCTACGTGAGCGGGCTCACCCGCGCCATGGAGGCGGGCCAGGTGCGGCGCATGGACCCGGAGGCG
CTGGCCTACTGCCTCATGGGCATCAGTGATTTCCTCGGCATGCGCTGGGTCCTCTGGGAGGAGGACCCGGGGCTCGAGCG
CGTCCTCGACACCGCGATGACGCTCATCTCCCACGGCCTGGACCCGCGTGCGTCCACGGGCCGCAACACCGTGAAGTCCT
CCGCCGCTTCGAAGCCGAAGCCGAAGCTGAAGCCCAAACCGAAGCCCCTGAAGAAGAACACCCTGCGTCCCGCCCGCCGA
CCGGCGCGCGGCGCCCGGAGCTGA

Upstream 100 bases:

>100_bases
CACGAGTGCTGACGCCGTGCGTCGAACGTTCGGTTTGACGCGCGAAGCCATCGGCCGTGCTTTGACACCCTCCCTGCCGG
GTGCTACCGCTAGGTGAAAC

Downstream 100 bases:

>100_bases
CGAACACTCATGCGATACGCCCAGATTCTCTCCACTGGCCGCTACGTCCCCGAGAAGGTCCTCACCAACGCTGACGTCGA
GAAGATTCTCGGTGAGAAGG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MNRASSSQDRSGPVTPRGQKTRAKLLKAAESVFGEKGYERASIADITRKGGVALGTFYVYFPDKQSIFVEVVDELGTRLR
RLIAESVAGCEDRVDVERQGLRTFFQFVRQHPNLYRVVRQAEFVDEACYRRYYDRFARGYVSGLTRAMEAGQVRRMDPEA
LAYCLMGISDFLGMRWVLWEEDPGLERVLDTAMTLISHGLDPRASTGRNTVKSSAASKPKPKLKPKPKPLKKNTLRPARR
PARGARS

Sequences:

>Translated_247_residues
MNRASSSQDRSGPVTPRGQKTRAKLLKAAESVFGEKGYERASIADITRKGGVALGTFYVYFPDKQSIFVEVVDELGTRLR
RLIAESVAGCEDRVDVERQGLRTFFQFVRQHPNLYRVVRQAEFVDEACYRRYYDRFARGYVSGLTRAMEAGQVRRMDPEA
LAYCLMGISDFLGMRWVLWEEDPGLERVLDTAMTLISHGLDPRASTGRNTVKSSAASKPKPKLKPKPKPLKKNTLRPARR
PARGARS
>Mature_247_residues
MNRASSSQDRSGPVTPRGQKTRAKLLKAAESVFGEKGYERASIADITRKGGVALGTFYVYFPDKQSIFVEVVDELGTRLR
RLIAESVAGCEDRVDVERQGLRTFFQFVRQHPNLYRVVRQAEFVDEACYRRYYDRFARGYVSGLTRAMEAGQVRRMDPEA
LAYCLMGISDFLGMRWVLWEEDPGLERVLDTAMTLISHGLDPRASTGRNTVKSSAASKPKPKLKPKPKPLKKNTLRPARR
PARGARS

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 27891; Mature: 27891

Theoretical pI: Translated: 10.68; Mature: 10.68

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRASSSQDRSGPVTPRGQKTRAKLLKAAESVFGEKGYERASIADITRKGGVALGTFYVY
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEEEEEE
FPDKQSIFVEVVDELGTRLRRLIAESVAGCEDRVDVERQGLRTFFQFVRQHPNLYRVVRQ
ECCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
AEFVDEACYRRYYDRFARGYVSGLTRAMEAGQVRRMDPEALAYCLMGISDFLGMRWVLWE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHCCEEEEEC
EDPGLERVLDTAMTLISHGLDPRASTGRNTVKSSAASKPKPKLKPKPKPLKKNTLRPARR
CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHC
PARGARS
CCCCCCC
>Mature Secondary Structure
MNRASSSQDRSGPVTPRGQKTRAKLLKAAESVFGEKGYERASIADITRKGGVALGTFYVY
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEEEEEEEE
FPDKQSIFVEVVDELGTRLRRLIAESVAGCEDRVDVERQGLRTFFQFVRQHPNLYRVVRQ
ECCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
AEFVDEACYRRYYDRFARGYVSGLTRAMEAGQVRRMDPEALAYCLMGISDFLGMRWVLWE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHCCEEEEEC
EDPGLERVLDTAMTLISHGLDPRASTGRNTVKSSAASKPKPKLKPKPKPLKKNTLRPARR
CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHC
PARGARS
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]