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The map label for this gene is ycaN [H]

Identifier: 108762587

GI number: 108762587

Start: 2082772

End: 2083716

Strand: Reverse

Name: ycaN [H]

Synonym: MXAN_1757

Alternate gene names: 108762587

Gene position: 2083716-2082772 (Counterclockwise)

Preceding gene: 108757587

Following gene: 108759206

Centisome position: 22.8

GC content: 62.43

Gene sequence:

>945_bases
ATGCAAGTCCTAATCGTGAATACTTCCCTATTCCCTCACCTCCAAACGTTCCTCGCTGTGGCGCGCACGCGGAGCTTCAG
CGCCGCAGCTCGCGACCTGGGTATCTCGCGCTCCGCAGTAAGCCAGAGCGTGCGCTTGCTCGAAGGGAAGCTTCGAGTGC
CCCTCGTCGCACGCACGACGCGCAGCGTATCCCTCACAGAGGCAGGGAGGCGCCTCGTGGAGTCCGCAGGCCCAGCCGTC
ACACAGGTTCAAGCAGCGCTCACGCAGGCCTCTGCAAAACCAGGTGAGGTGGTGGGCCGCGTACGGTTGACAGTCCCCCG
CGCCGCCTTTCATTTCGTGATTGAGCCCGTCTTGCCGAAGTTCCGGGAACGTCATCCTCGTATCGAGGTCGACCTCGTCT
TCGAGGACCGGATGGTGGACCTCGTCGGCGAGGGGTTCGATGCGGGCGTTCGCCTGAGCGAGTATGTTGAGCGCGACATG
GTGAGTGTTCGTCTCACCGATGCCTTTCGATTCATCGTCGTCGGCTCACCCACCTACCTAGGTAGGCACGGGACTCCAGG
GCGCCCAGAAGATCTCCTCGAACATGAGTGCTTGACCTTTCGCTCGTCCACCACGGGTTCGCTCTACGCCTGGGAATTCG
AACGCGGTCGCCGGACGTGGCGGGTGCCCGTCCGTGGAAGCCTTGTCGTCAACGACGGTCTGATTTGCATACGATGGGCG
GAGCAAGGGCTGGGCCTCGCGTATGTGATGGAGCCTTTGGTCGGCGAGCAGCTTCGAAAGGGAAGTCTGCAGCGCGTGCT
CGAGCCGTACGCCGCAACCGTTCCTGGCTTCTTCCTCTACTATCCCAGCCGCGCGCAGAGCTCAGCTCCACTTCGTCTCT
TCGTCGAAACGGTCCGTGAGCTGACACGCAAGCCGCCAGTGGCCACGAAACAACTCGGGCCTTGA

Upstream 100 bases:

>100_bases
CGGATGGAACATGCGTACCCGCGCTCGCCCCGTGAAGATGCTGGTTGAGGATGGGCTGTCAAGCTGCACTTGACAGCCGC
CACTCGGCTGGAAACGTAAC

Downstream 100 bases:

>100_bases
GGCGGCTCCCGGCGTCGGGCAACCGCGCACACCGCAACCTCTCTCAACACGCCATCGTTCGCCATTGAGTCTTCAAAGAC
CGACGCGACCTCGATGCCCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MQVLIVNTSLFPHLQTFLAVARTRSFSAAARDLGISRSAVSQSVRLLEGKLRVPLVARTTRSVSLTEAGRRLVESAGPAV
TQVQAALTQASAKPGEVVGRVRLTVPRAAFHFVIEPVLPKFRERHPRIEVDLVFEDRMVDLVGEGFDAGVRLSEYVERDM
VSVRLTDAFRFIVVGSPTYLGRHGTPGRPEDLLEHECLTFRSSTTGSLYAWEFERGRRTWRVPVRGSLVVNDGLICIRWA
EQGLGLAYVMEPLVGEQLRKGSLQRVLEPYAATVPGFFLYYPSRAQSSAPLRLFVETVRELTRKPPVATKQLGP

Sequences:

>Translated_314_residues
MQVLIVNTSLFPHLQTFLAVARTRSFSAAARDLGISRSAVSQSVRLLEGKLRVPLVARTTRSVSLTEAGRRLVESAGPAV
TQVQAALTQASAKPGEVVGRVRLTVPRAAFHFVIEPVLPKFRERHPRIEVDLVFEDRMVDLVGEGFDAGVRLSEYVERDM
VSVRLTDAFRFIVVGSPTYLGRHGTPGRPEDLLEHECLTFRSSTTGSLYAWEFERGRRTWRVPVRGSLVVNDGLICIRWA
EQGLGLAYVMEPLVGEQLRKGSLQRVLEPYAATVPGFFLYYPSRAQSSAPLRLFVETVRELTRKPPVATKQLGP
>Mature_314_residues
MQVLIVNTSLFPHLQTFLAVARTRSFSAAARDLGISRSAVSQSVRLLEGKLRVPLVARTTRSVSLTEAGRRLVESAGPAV
TQVQAALTQASAKPGEVVGRVRLTVPRAAFHFVIEPVLPKFRERHPRIEVDLVFEDRMVDLVGEGFDAGVRLSEYVERDM
VSVRLTDAFRFIVVGSPTYLGRHGTPGRPEDLLEHECLTFRSSTTGSLYAWEFERGRRTWRVPVRGSLVVNDGLICIRWA
EQGLGLAYVMEPLVGEQLRKGSLQRVLEPYAATVPGFFLYYPSRAQSSAPLRLFVETVRELTRKPPVATKQLGP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=294, Percent_Identity=38.0952380952381, Blast_Score=203, Evalue=9e-54,
Organism=Escherichia coli, GI1787589, Length=286, Percent_Identity=34.2657342657343, Blast_Score=177, Evalue=6e-46,
Organism=Escherichia coli, GI87081978, Length=297, Percent_Identity=31.3131313131313, Blast_Score=124, Evalue=7e-30,
Organism=Escherichia coli, GI1786401, Length=304, Percent_Identity=29.6052631578947, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1789440, Length=292, Percent_Identity=30.4794520547945, Blast_Score=117, Evalue=9e-28,
Organism=Escherichia coli, GI1789639, Length=270, Percent_Identity=31.8518518518519, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI145693193, Length=283, Percent_Identity=29.3286219081272, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1788706, Length=272, Percent_Identity=24.6323529411765, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1788748, Length=144, Percent_Identity=32.6388888888889, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI145693105, Length=146, Percent_Identity=29.4520547945205, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1787601, Length=132, Percent_Identity=26.5151515151515, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1786448, Length=291, Percent_Identity=27.4914089347079, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI157672245, Length=141, Percent_Identity=31.2056737588652, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1789173, Length=256, Percent_Identity=26.171875, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34923; Mature: 34923

Theoretical pI: Translated: 10.59; Mature: 10.59

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVLIVNTSLFPHLQTFLAVARTRSFSAAARDLGISRSAVSQSVRLLEGKLRVPLVARTT
CEEEEEECCHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEECC
RSVSLTEAGRRLVESAGPAVTQVQAALTQASAKPGEVVGRVRLTVPRAAFHFVIEPVLPK
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEEEEEEECHHHHHHHHHHHHHH
FRERHPRIEVDLVFEDRMVDLVGEGFDAGVRLSEYVERDMVSVRLTDAFRFIVVGSPTYL
HHHHCCCEEEEEEECCHHHHHHCCCCCCCCHHHHHHHHHHHEEEEECEEEEEEECCCCCC
GRHGTPGRPEDLLEHECLTFRSSTTGSLYAWEFERGRRTWRVPVRGSLVVNDGLICIRWA
CCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEECCCCEEEEECCEEEEEEC
EQGLGLAYVMEPLVGEQLRKGSLQRVLEPYAATVPGFFLYYPSRAQSSAPLRLFVETVRE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHH
LTRKPPVATKQLGP
HHCCCCCCCCCCCC
>Mature Secondary Structure
MQVLIVNTSLFPHLQTFLAVARTRSFSAAARDLGISRSAVSQSVRLLEGKLRVPLVARTT
CEEEEEECCHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEECC
RSVSLTEAGRRLVESAGPAVTQVQAALTQASAKPGEVVGRVRLTVPRAAFHFVIEPVLPK
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEEEEEEECHHHHHHHHHHHHHH
FRERHPRIEVDLVFEDRMVDLVGEGFDAGVRLSEYVERDMVSVRLTDAFRFIVVGSPTYL
HHHHCCCEEEEEEECCHHHHHHCCCCCCCCHHHHHHHHHHHEEEEECEEEEEEECCCCCC
GRHGTPGRPEDLLEHECLTFRSSTTGSLYAWEFERGRRTWRVPVRGSLVVNDGLICIRWA
CCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEEECCCCEEEEECCEEEEEEC
EQGLGLAYVMEPLVGEQLRKGSLQRVLEPYAATVPGFFLYYPSRAQSSAPLRLFVETVRE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHH
LTRKPPVATKQLGP
HHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]