Definition Myxococcus xanthus DK 1622 chromosome, complete genome.
Accession NC_008095
Length 9,139,763

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The map label for this gene is rfbB [H]

Identifier: 108762538

GI number: 108762538

Start: 5805135

End: 5806448

Strand: Reverse

Name: rfbB [H]

Synonym: MXAN_4622

Alternate gene names: 108762538

Gene position: 5806448-5805135 (Counterclockwise)

Preceding gene: 108758320

Following gene: 108763525

Centisome position: 63.53

GC content: 66.13

Gene sequence:

>1314_bases
ATGCCTGAATCCATGGACGCCATCATCCTGAAGGACGTCGTGAAGAGCTTCCGGAAGCGGACCATCCGGGGCGAGTACAC
GACCTTCAAATCCGAGCTGCTTCGCTGGCTGCGCGGCAAGCGCCAGTCGCGTGATGCCAGCCTCATCACCGCGCTGCGCG
GCATCAATCTCACCATCCCCAAGGGTAAGACGGTGGGCATCATCGGGCGGAACGGCTCGGGGAAGAGCACGCTGCTCAAG
CTCATCACCGGCATCTACACGCCCACCTCCGGCGACTTGCAGATCAACGGTCGCATCTCCGCCTTGCTGGACCTGGGCGC
TGGCTTCCATCCGGACTTCTCCGGACGGGAGAACATCCTCATCAACGGCATCATCCTGGGCATGACGCGCGCCGAGGTCC
GGGCCCGGATGGATGAAATCATCGCCTTCAGTGAGCTGGGCGAGTTCATCGACGAGCCGGTGCGCACCTACTCCAGTGGC
ATGTACATGCGCCTGGCGTTCGCGGTGGCCACGCACGTGGACCCGGACATCCTCATCATCGACGAAATCCTCGCCGTCGG
GGACGAGCACTTCAGCAAGAAGAGCCTCGCCAAGATGATGGACTTCAAGCGTCAGGGGAAGACCATCGTCCTGGTGACGC
ACGAGCTGGGCACCGTGGAGCGCTGGTGCGACCTGGCTGCGTGGATTGATGGTGGCTACGTCCGCCGCGTGGGCAAGCCC
TCGGAGGTCACCGCCGAGTACCGTGAGGCCATTTCCCTGGCGGAGGCGCAGTCCGCCGCCTTCACGCCTCCGGCGCTCAC
GGAAGGGGGCGGTGCGCTGCCGCAAGTCCCCTCCGAATCGCTGCCCGCCGAAGGGCCCGTCCGCATCCACCGGGTGCAGT
TGTTGGATGCTCGGGGAGAGTCCCTGGAAGTCCTGTCGCCGGAGGAGGGCCTGGAGGTCCGTGCGGATTTCTCCGTGGAA
GGGCCGTGTGAGGACGTGGACTTCCACGTGCGACTGCAGGCCGCGGACGGACGCACCCTGTATGAGACGAGCACCCGCAG
TGAGGCGGTGGTGCTCTCTCGGATGCCGAACCCGGGCGTGCTTCGTTTCGTGGTCGAGCGCCTGGGGGCGCTGGGGGGCG
ACTACTCCCTGGTGGTGTCGGCTCGGGCCTCGAAGGGTGAGTCGTCCGGGCGCTGTGCGTTCCGGGTGGTGTCGGCGACC
GAGGAGGAGGGGGTGTTTCGTCCTCCTCACCGGTGGTTGGTGGAGCCGGGTGCCAACTCCCAGGCGGGCGTCCCATTCGA
GCCGGGCACGTCTCCGCGTGTGGAGGTGGGATGA

Upstream 100 bases:

>100_bases
TGATGGCGCTGGCGGCCGTCTCCGTGGTGCTGCTGTGGGCCGCCTCGTCCATCTTCGAATCCCGCCGCGAAGAGTTCGCG
GAGTCCATCTGAGCGTCGGC

Downstream 100 bases:

>100_bases
AGGTTCAGGAGCGCGCCGGTACCCAGGGCGAAGGGTGAGTCATGTGGCAGAAGTGGGCTGATGTGACGCAGGGGCACGTG
GCGGCGCCGGGGCCGGGAGA

Product: o-antigen ABC exporter, ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 437; Mature: 436

Protein sequence:

>437_residues
MPESMDAIILKDVVKSFRKRTIRGEYTTFKSELLRWLRGKRQSRDASLITALRGINLTIPKGKTVGIIGRNGSGKSTLLK
LITGIYTPTSGDLQINGRISALLDLGAGFHPDFSGRENILINGIILGMTRAEVRARMDEIIAFSELGEFIDEPVRTYSSG
MYMRLAFAVATHVDPDILIIDEILAVGDEHFSKKSLAKMMDFKRQGKTIVLVTHELGTVERWCDLAAWIDGGYVRRVGKP
SEVTAEYREAISLAEAQSAAFTPPALTEGGGALPQVPSESLPAEGPVRIHRVQLLDARGESLEVLSPEEGLEVRADFSVE
GPCEDVDFHVRLQAADGRTLYETSTRSEAVVLSRMPNPGVLRFVVERLGALGGDYSLVVSARASKGESSGRCAFRVVSAT
EEEGVFRPPHRWLVEPGANSQAGVPFEPGTSPRVEVG

Sequences:

>Translated_437_residues
MPESMDAIILKDVVKSFRKRTIRGEYTTFKSELLRWLRGKRQSRDASLITALRGINLTIPKGKTVGIIGRNGSGKSTLLK
LITGIYTPTSGDLQINGRISALLDLGAGFHPDFSGRENILINGIILGMTRAEVRARMDEIIAFSELGEFIDEPVRTYSSG
MYMRLAFAVATHVDPDILIIDEILAVGDEHFSKKSLAKMMDFKRQGKTIVLVTHELGTVERWCDLAAWIDGGYVRRVGKP
SEVTAEYREAISLAEAQSAAFTPPALTEGGGALPQVPSESLPAEGPVRIHRVQLLDARGESLEVLSPEEGLEVRADFSVE
GPCEDVDFHVRLQAADGRTLYETSTRSEAVVLSRMPNPGVLRFVVERLGALGGDYSLVVSARASKGESSGRCAFRVVSAT
EEEGVFRPPHRWLVEPGANSQAGVPFEPGTSPRVEVG
>Mature_436_residues
PESMDAIILKDVVKSFRKRTIRGEYTTFKSELLRWLRGKRQSRDASLITALRGINLTIPKGKTVGIIGRNGSGKSTLLKL
ITGIYTPTSGDLQINGRISALLDLGAGFHPDFSGRENILINGIILGMTRAEVRARMDEIIAFSELGEFIDEPVRTYSSGM
YMRLAFAVATHVDPDILIIDEILAVGDEHFSKKSLAKMMDFKRQGKTIVLVTHELGTVERWCDLAAWIDGGYVRRVGKPS
EVTAEYREAISLAEAQSAAFTPPALTEGGGALPQVPSESLPAEGPVRIHRVQLLDARGESLEVLSPEEGLEVRADFSVEG
PCEDVDFHVRLQAADGRTLYETSTRSEAVVLSRMPNPGVLRFVVERLGALGGDYSLVVSARASKGESSGRCAFRVVSATE
EEGVFRPPHRWLVEPGANSQAGVPFEPGTSPRVEVG

Specific function: May form an ATP-driven O-antigen export apparatus, in association with RfbA [H]

COG id: COG1134

COG function: function code GM; ABC-type polysaccharide/polyol phosphate transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI27436953, Length=195, Percent_Identity=26.1538461538462, Blast_Score=86, Evalue=6e-17,
Organism=Homo sapiens, GI31657092, Length=221, Percent_Identity=28.9592760180996, Blast_Score=83, Evalue=4e-16,
Organism=Homo sapiens, GI150417984, Length=269, Percent_Identity=24.907063197026, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI47078218, Length=250, Percent_Identity=27.2, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI45446740, Length=250, Percent_Identity=27.2, Blast_Score=78, Evalue=2e-14,
Organism=Homo sapiens, GI27262624, Length=211, Percent_Identity=25.1184834123223, Blast_Score=77, Evalue=4e-14,
Organism=Homo sapiens, GI27262626, Length=211, Percent_Identity=25.1184834123223, Blast_Score=77, Evalue=4e-14,
Organism=Homo sapiens, GI6005701, Length=206, Percent_Identity=24.2718446601942, Blast_Score=77, Evalue=4e-14,
Organism=Homo sapiens, GI27477115, Length=236, Percent_Identity=22.0338983050847, Blast_Score=76, Evalue=5e-14,
Organism=Homo sapiens, GI153792144, Length=212, Percent_Identity=23.5849056603774, Blast_Score=76, Evalue=6e-14,
Organism=Homo sapiens, GI116734710, Length=225, Percent_Identity=27.5555555555556, Blast_Score=76, Evalue=7e-14,
Organism=Homo sapiens, GI255708477, Length=225, Percent_Identity=30.6666666666667, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI89111135, Length=211, Percent_Identity=29.3838862559242, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI105990541, Length=202, Percent_Identity=28.2178217821782, Blast_Score=75, Evalue=2e-13,
Organism=Homo sapiens, GI9961252, Length=229, Percent_Identity=25.764192139738, Blast_Score=72, Evalue=8e-13,
Organism=Homo sapiens, GI27881501, Length=212, Percent_Identity=24.5283018867925, Blast_Score=72, Evalue=8e-13,
Organism=Homo sapiens, GI30795238, Length=212, Percent_Identity=24.5283018867925, Blast_Score=72, Evalue=8e-13,
Organism=Homo sapiens, GI4505771, Length=229, Percent_Identity=25.764192139738, Blast_Score=72, Evalue=9e-13,
Organism=Homo sapiens, GI9961250, Length=229, Percent_Identity=25.764192139738, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI21729873, Length=237, Percent_Identity=27.4261603375527, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI15149474, Length=237, Percent_Identity=27.4261603375527, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI21729876, Length=237, Percent_Identity=27.4261603375527, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI42741659, Length=230, Percent_Identity=26.9565217391304, Blast_Score=71, Evalue=3e-12,
Organism=Homo sapiens, GI156105685, Length=185, Percent_Identity=29.7297297297297, Blast_Score=68, Evalue=2e-11,
Organism=Escherichia coli, GI87081709, Length=234, Percent_Identity=29.0598290598291, Blast_Score=97, Evalue=3e-21,
Organism=Escherichia coli, GI48994943, Length=294, Percent_Identity=29.2517006802721, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1787029, Length=217, Percent_Identity=30.4147465437788, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1786398, Length=216, Percent_Identity=29.1666666666667, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1790467, Length=202, Percent_Identity=29.2079207920792, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI87081791, Length=204, Percent_Identity=25, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1789891, Length=203, Percent_Identity=26.6009852216749, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787143, Length=203, Percent_Identity=29.5566502463054, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1786319, Length=187, Percent_Identity=31.0160427807487, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI1788761, Length=210, Percent_Identity=27.1428571428571, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1787089, Length=220, Percent_Identity=25.9090909090909, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1786703, Length=204, Percent_Identity=26.9607843137255, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1788450, Length=205, Percent_Identity=29.7560975609756, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI87081834, Length=209, Percent_Identity=28.2296650717703, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI87082267, Length=203, Percent_Identity=26.6009852216749, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788225, Length=207, Percent_Identity=30.4347826086957, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790525, Length=196, Percent_Identity=27.0408163265306, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1787758, Length=203, Percent_Identity=27.0935960591133, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1790739, Length=209, Percent_Identity=26.7942583732057, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1789032, Length=209, Percent_Identity=25.3588516746411, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI48995001, Length=206, Percent_Identity=24.7572815533981, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1787712, Length=206, Percent_Identity=24.7572815533981, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1787370, Length=204, Percent_Identity=26.4705882352941, Blast_Score=66, Evalue=6e-12,
Organism=Escherichia coli, GI1786654, Length=191, Percent_Identity=29.3193717277487, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1787105, Length=183, Percent_Identity=26.2295081967213, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI87081782, Length=206, Percent_Identity=24.7572815533981, Blast_Score=63, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17565938, Length=211, Percent_Identity=33.175355450237, Blast_Score=77, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17543740, Length=213, Percent_Identity=31.4553990610329, Blast_Score=76, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI193208177, Length=245, Percent_Identity=28.9795918367347, Blast_Score=73, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI115533608, Length=177, Percent_Identity=28.8135593220339, Blast_Score=73, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17565586, Length=216, Percent_Identity=24.0740740740741, Blast_Score=72, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17567269, Length=229, Percent_Identity=27.5109170305677, Blast_Score=71, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17569081, Length=199, Percent_Identity=31.6582914572864, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI115535101, Length=231, Percent_Identity=26.4069264069264, Blast_Score=69, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17567265, Length=226, Percent_Identity=26.1061946902655, Blast_Score=65, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6324985, Length=250, Percent_Identity=28, Blast_Score=68, Evalue=4e-12,
Organism=Saccharomyces cerevisiae, GI6323959, Length=229, Percent_Identity=29.6943231441048, Blast_Score=64, Evalue=4e-11,
Organism=Drosophila melanogaster, GI28573571, Length=224, Percent_Identity=27.6785714285714, Blast_Score=79, Evalue=5e-15,
Organism=Drosophila melanogaster, GI28573573, Length=224, Percent_Identity=27.6785714285714, Blast_Score=79, Evalue=6e-15,
Organism=Drosophila melanogaster, GI281362751, Length=183, Percent_Identity=29.5081967213115, Blast_Score=77, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24650853, Length=196, Percent_Identity=28.5714285714286, Blast_Score=75, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24650855, Length=196, Percent_Identity=28.5714285714286, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI85725262, Length=176, Percent_Identity=28.4090909090909, Blast_Score=70, Evalue=4e-12,
Organism=Drosophila melanogaster, GI28574259, Length=198, Percent_Identity=28.2828282828283, Blast_Score=69, Evalue=7e-12,
Organism=Drosophila melanogaster, GI62484234, Length=196, Percent_Identity=29.0816326530612, Blast_Score=68, Evalue=2e-11,
Organism=Drosophila melanogaster, GI221512771, Length=215, Percent_Identity=25.1162790697674, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI116007184, Length=197, Percent_Identity=24.3654822335025, Blast_Score=65, Evalue=6e-11,
Organism=Drosophila melanogaster, GI221500365, Length=197, Percent_Identity=24.3654822335025, Blast_Score=65, Evalue=7e-11,
Organism=Drosophila melanogaster, GI24643674, Length=216, Percent_Identity=23.1481481481481, Blast_Score=65, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: 3.6.3.30 [C]

Molecular weight: Translated: 47618; Mature: 47487

Theoretical pI: Translated: 6.21; Mature: 6.21

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MPESMDAIILKDVVKSFRKRTIRGEYTTFKSELLRWLRGKRQSRDASLITALRGINLTIP
CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCEEEEC
KGKTVGIIGRNGSGKSTLLKLITGIYTPTSGDLQINGRISALLDLGAGFHPDFSGRENIL
CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCEEECCCEEEEEECCCCCCCCCCCCCCEE
INGIILGMTRAEVRARMDEIIAFSELGEFIDEPVRTYSSGMYMRLAFAVATHVDPDILII
EEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEH
DEILAVGDEHFSKKSLAKMMDFKRQGKTIVLVTHELGTVERWCDLAAWIDGGYVRRVGKP
HHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEECCCC
SEVTAEYREAISLAEAQSAAFTPPALTEGGGALPQVPSESLPAEGPVRIHRVQLLDARGE
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCC
SLEVLSPEEGLEVRADFSVEGPCEDVDFHVRLQAADGRTLYETSTRSEAVVLSRMPNPGV
EEEEECCCCCCEEEECCCCCCCCCCCCEEEEEEECCCCEEEECCCCCCEEEEECCCCCHH
LRFVVERLGALGGDYSLVVSARASKGESSGRCAFRVVSATEEEGVFRPPHRWLVEPGANS
HHHHHHHHHHCCCCEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCHHEEECCCCCC
QAGVPFEPGTSPRVEVG
CCCCCCCCCCCCCEECC
>Mature Secondary Structure 
PESMDAIILKDVVKSFRKRTIRGEYTTFKSELLRWLRGKRQSRDASLITALRGINLTIP
CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCEEEEC
KGKTVGIIGRNGSGKSTLLKLITGIYTPTSGDLQINGRISALLDLGAGFHPDFSGRENIL
CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCEEECCCEEEEEECCCCCCCCCCCCCCEE
INGIILGMTRAEVRARMDEIIAFSELGEFIDEPVRTYSSGMYMRLAFAVATHVDPDILII
EEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEH
DEILAVGDEHFSKKSLAKMMDFKRQGKTIVLVTHELGTVERWCDLAAWIDGGYVRRVGKP
HHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEECCCC
SEVTAEYREAISLAEAQSAAFTPPALTEGGGALPQVPSESLPAEGPVRIHRVQLLDARGE
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCC
SLEVLSPEEGLEVRADFSVEGPCEDVDFHVRLQAADGRTLYETSTRSEAVVLSRMPNPGV
EEEEECCCCCCEEEECCCCCCCCCCCCEEEEEEECCCCEEEECCCCCCEEEEECCCCCHH
LRFVVERLGALGGDYSLVVSARASKGESSGRCAFRVVSATEEEGVFRPPHRWLVEPGANS
HHHHHHHHHHCCCCEEEEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCHHEEECCCCCC
QAGVPFEPGTSPRVEVG
CCCCCCCCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8626291 [H]