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The map label for this gene is rfbA

Identifier: 108758320

GI number: 108758320

Start: 5806457

End: 5807239

Strand: Reverse

Name: rfbA

Synonym: MXAN_4623

Alternate gene names: 108758320

Gene position: 5807239-5806457 (Counterclockwise)

Preceding gene: 108760805

Following gene: 108762538

Centisome position: 63.54

GC content: 62.58

Gene sequence:

>783_bases
ATGATTCGGCTCGTCCGTGAACTGTATCAGTACCGGGGCTTGCTCATCAGCCTCGTCCAGCGGGAACTGAAGGCGCGTTA
TCGCGGCTCGTTCCTCGGCTTCCTGTGGACGTTCCTGAATCCGACGCTCCACATGCTGGTGTACGTGCTGCTGTTCACCG
TGGTGATGCGGCAGAACATCCCCAACTTCCCGTTCTTCATGTTCGTGGGCCTGCTGCCGTGGATCTGGTTCTCCACGTCG
GTCGGCGGCGGGGCCAGCGCGATCAGCGACCGACGGGACTTGCTGACCAAGGTCCGCTTCCCGGCCCAGGTGCTGCCCAC
GTCGGTGGTGGTGACGAACCTCTGTAACTTCGTCTTGTCGCTTCCGCTGATGCTGGTGCTGGGCATGGCGTACGGACAGT
GGCCAACCTGGCACGTGGTGTTGTTCCCGGTGGTGGTGCTCATCCAGCTCACCTTCACGCTGGCGCTGACCTACATCCTG
GCGGCCATCAACGTGACATTCCGGGACCTGCAGCACATCGTCAGCAACCTGCTGACGCTGTGGTTCTTCGCCACGCCGGT
GCTGTATCCGCTCTCCACCATCCAGGATGAGAGCGCCCGCTCGTTGATGCTGGCCCTCAATCCCATGGTCAGCCTGATGA
CGTCGTACCAGGCCATCTTCTACGAGCACCGGCTTCCGGACGCAGAGCCCTTGATGGCGCTGGCGGCCGTCTCCGTGGTG
CTGCTGTGGGCCGCCTCGTCCATCTTCGAATCCCGCCGCGAAGAGTTCGCGGAGTCCATCTGA

Upstream 100 bases:

>100_bases
CTCTTCAAATGAGCAGCCGTCCGAGGGCGTCAGCAGAGTGGGGCCGGGGGCGCCGGGCGTCCTCGCAACAGCAAGCGGCC
CTGCTATAGAAGGCCCCCTC

Downstream 100 bases:

>100_bases
GCGTCGGCATGCCTGAATCCATGGACGCCATCATCCTGAAGGACGTCGTGAAGAGCTTCCGGAAGCGGACCATCCGGGGC
GAGTACACGACCTTCAAATC

Product: o-antigen ABC exporter, permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MIRLVRELYQYRGLLISLVQRELKARYRGSFLGFLWTFLNPTLHMLVYVLLFTVVMRQNIPNFPFFMFVGLLPWIWFSTS
VGGGASAISDRRDLLTKVRFPAQVLPTSVVVTNLCNFVLSLPLMLVLGMAYGQWPTWHVVLFPVVVLIQLTFTLALTYIL
AAINVTFRDLQHIVSNLLTLWFFATPVLYPLSTIQDESARSLMLALNPMVSLMTSYQAIFYEHRLPDAEPLMALAAVSVV
LLWAASSIFESRREEFAESI

Sequences:

>Translated_260_residues
MIRLVRELYQYRGLLISLVQRELKARYRGSFLGFLWTFLNPTLHMLVYVLLFTVVMRQNIPNFPFFMFVGLLPWIWFSTS
VGGGASAISDRRDLLTKVRFPAQVLPTSVVVTNLCNFVLSLPLMLVLGMAYGQWPTWHVVLFPVVVLIQLTFTLALTYIL
AAINVTFRDLQHIVSNLLTLWFFATPVLYPLSTIQDESARSLMLALNPMVSLMTSYQAIFYEHRLPDAEPLMALAAVSVV
LLWAASSIFESRREEFAESI
>Mature_260_residues
MIRLVRELYQYRGLLISLVQRELKARYRGSFLGFLWTFLNPTLHMLVYVLLFTVVMRQNIPNFPFFMFVGLLPWIWFSTS
VGGGASAISDRRDLLTKVRFPAQVLPTSVVVTNLCNFVLSLPLMLVLGMAYGQWPTWHVVLFPVVVLIQLTFTLALTYIL
AAINVTFRDLQHIVSNLLTLWFFATPVLYPLSTIQDESARSLMLALNPMVSLMTSYQAIFYEHRLPDAEPLMALAAVSVV
LLWAASSIFESRREEFAESI

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbB

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RFBA_MYXXA (Q50862)

Other databases:

- EMBL:   U36795
- PIR:   T18554
- InterPro:   IPR000412
- InterPro:   IPR013525

Pfam domain/function: PF01061 ABC2_membrane

EC number: NA

Molecular weight: Translated: 29689; Mature: 29689

Theoretical pI: Translated: 9.30; Mature: 9.30

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1b4c1190)-; HASH(0x1a02dae8)-; HASH(0x1cb64108)-; HASH(0x1b99740c)-; HASH(0x4093cac4)-; HASH(0x1abd900c)-; HASH(0x19265d58)-;

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHCH
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8626291