| Definition | Myxococcus xanthus DK 1622 chromosome, complete genome. |
|---|---|
| Accession | NC_008095 |
| Length | 9,139,763 |
Click here to switch to the map view.
The map label for this gene is rng [H]
Identifier: 108762342
GI number: 108762342
Start: 7005598
End: 7008408
Strand: Direct
Name: rng [H]
Synonym: MXAN_5640
Alternate gene names: 108762342
Gene position: 7005598-7008408 (Clockwise)
Preceding gene: 108757213
Following gene: 108758048
Centisome position: 76.65
GC content: 70.79
Gene sequence:
>2811_bases ATGAGCAGCATCCTGGTCATCAACGCCGCGGGCCGAGAGACGCGCGTCGCGCTCGTCGAGGGCGGACACATCGCGGAGTT CTACCTCGAGCGTAAGAAGGACAAGGGCGTCGTCGGGAACATCTACAAGGGCCGCGTCGTCCGGGTGCTCCCGGGCATGC AGGCCGCCTTCGTGGACATTGGCCTGGAGAAGGCCGCGTTCCTCTATGTCAGTGACGTCGTCTACGACCCTGACTTCGCG CGCGCGCAGTTCGAGCTGACCGAAGGTGAGCACGAGGATGCGCCGGACGTCCCGGACGAGTCCGAGGCCGAGGCCGCGGA GGCCGCCGCCCGGCACGCGCCCCCCCGTCACCTGGAGCCGGAGCCGGAGGACGCCCATTTCGAGCCTGTCGCGGCGCCCA CCGAGTCCCTGCCGCGCGATACCGCCCTGGAGCTGGCCGCCAACGCCCCGACGGTGACGCCGCCGGGCGCGGAGACGCCG GTGGCGCCCGCGGAGGAAGCGCCGGCCGCCGGGTCGGAGCTGGTGGTGGCCGCCGAGGTGGCCGTTCAGCCCGTCACGCC CGAGCAGATTGTCGCGGTCGAGCCGTCCACGGCGGCGCCCGTGGAGGCCGCGCCTGCTCCGGCAGGTGGAGAGGCCGAGG CCGCGCCCTCCTCCGAGCCTCAGATGGCCGAGGCCGCCGTGGAGCCCGACGCGAACGTCGAGTCGCCCGAGGCGGCGCTG GCCGTTGCCGCGGCGTCCGAGCCCGACGCGGCCGGGGTGGCGGTGCCCGCTGAATCGGCCATGGAAGCGGCCGAGGGCGA GGCCACCGGTCTTCCCGTCGAGCCCCCTCCCCCCTCGGCCGCCGCGCTGGGAGACATCATCCCCTCGCCCGCTGAGGAGG GCGCGCAGGCTGCGAAGCCGTCCGAGGTCTCCGGCGAGCGCCGCACGCCGCGCGAGGCCCGTGAGGCGCGTGAGCCCCGG AACAGGGAGAAGGAGCGCGGCGAGAAGGACAAGGGCCGCCGGCCACAGGAGGAGAAGCGCCGGGGCGACAAGCACGAAGA CAAGGAGAAGGCCAAGCCGCGCCGCACCGACAAGATTGAGGACCTGCTGAAGGTGGGCCAGGAAGTCGTCGTCCAGATTT CCAAGGACCCCATCGGCACCAAGGGCGCGCGGCTCACCTCGCACATCTCCATCCCCGGCCGGCACCTGGTGTTCATGCCC ACGGTGGACCACGTGGGCATCAGCCGCCGCATCTCCAACGAGAAGGAGCGCCGGCGTCTGCGTGATATCGTGGACCGCCT GCGCCCGCCCGGGACGGGCTTCATCGTCCGCACCGTCGCGGAGAACGTGCCGCAGGAGAAGCTCGAGAGCGACATCCGGT TCCTCATCGAGGTGTGGAACCAGGTGGTGCGCAAGAACGAGAAGCGCGGCGGCCCTGGTCTGCTGCACCCCGACCTGGAC CTCATCCTGCGCGCCACGCGCGACCTCTTCGCGCACGACGTGGAGAAGCTCGTCGTCGATGACCGCGAGGAGTACGAGCG CATCCTCGGCTTCGTCACCGCGCAGGACCCGGCGCTGCGAGACAGGGTGGCCCTGCACGAGGGCGACGACACCGTCTTCG ACGCGTACGGCATCGAGCAGGAGCTCCAGCGCGCCACCCAGCGCAAGGTGTGGCTGAAGAGCGGCGGCTACCTCATCATC GACCAGGCCGAGGCGCTCACCGCCATCGACGTCAACTCGGGCCGCTACGTCGGCAAGAAGAGCCTCGAGGAGACCATCAC CAAGATCAACGTCGAGGCGGCCAAGGAGATTGTCTACCAGCTCCGGCTGCGCAACATCGGCGGCATCATCATCTGCGACT TCATCGACATGGAGAAGGCGCAGAACCGCGACAAGGTCTTCAAGGCGCTGCAGGAAGCGCTGGGCCGCGACAAGGCCAAG ACGAACGTGCTGCGCATCTCCGAGCTGGGCCTCGTGGAGATGACGCGCAAGCGCGTGCGCGAGTCCATTGGCCGCATGCT CCACGAGGACTGCCCGTACTGCGACGGCAACGGCTTCGTGAAGACGGCCACCACCGTGGCCTACGAAATCTTCCGGGAGA TTCGCCGCGAAGCGCCGGGCTACAAGGACTCCACGCTGGTCATCAACTGCAACGCGGAAGTGGCGCGCCTGCTCCAGGGC GAGGAGCGCAACGAGCTGCGGCACCTGATGGACCGGTACAACAAGTCCATCCAGGTCAAGGCGCAGCAGAACTACCACCG CGAGCAGTACGACATCTACGGACGCTCGGCCTCGGGACCGGAGCACAAGGTGGCCTCGTCGCCTGGCTCGGGTGATGGCG AGCTGGCCATGCAGCAGCGCAAGCCCGACAGCAATGGCGGAGGCTACGGCCGCCAGGAGCAGGGCCGGCGCGGCGGTGGT GGCGGCGGTGGTGGAGGCAGGGACCGGGGTGGTGAGCGGGGCAACGAACGCTCCGAGCGCGGTGAGCGGGGCGGAGACCG TCGCGAGGGCCGCCGCGAGGGCCGGAGTGGCGGAGACCGCCCTCGGGGTGACCGGGGTGGCGAGCGGGGCGACCGTTCCG AGCGCGGTGGGGAGCGTGGAGAGCGCGGCGGCGAACGGGGCGAACGCTCCGAGCGCGGCGGCGAACGGAGCGAGCGTGGT GAACGCTCCGAGCGCGGCGAGCGTGGCGACCGGCGTGGCGACCGCGGCGAGCGTGGAGAGCGCGGCGGTTCGCAGAACAC GTCTGGTGGAGGCGAGAACGCGGGTGGCTCGACGCCGCCTCCGCCTCCAGCCTCGGGTGGTGGGTCGGAGCCTTCGGGCG GCACGACCTGA
Upstream 100 bases:
>100_bases GAGGCCGCCTCTCCCTTCGCAGCGCGCTCGGAGGCGCGGCGTCTCGCCGCCGCCCGTCCGGTGAGGTCCGCCCTACCGCG CGCGCCAGCAGGATTCATCC
Downstream 100 bases:
>100_bases GTTCTTTCCGCCGGTCAGTCGTCGGCGCCCTGCCCTGCCGGTGGTTTCAAGGCCGGGGCTGGGAGCCGGCGGCGCTGGCG AGGCGGAAGTCGCTGGCCAG
Product: ribonuclease
Products: NA
Alternate protein names: RNase G; Cytoplasmic axial filament protein [H]
Number of amino acids: Translated: 936; Mature: 935
Protein sequence:
>936_residues MSSILVINAAGRETRVALVEGGHIAEFYLERKKDKGVVGNIYKGRVVRVLPGMQAAFVDIGLEKAAFLYVSDVVYDPDFA RAQFELTEGEHEDAPDVPDESEAEAAEAAARHAPPRHLEPEPEDAHFEPVAAPTESLPRDTALELAANAPTVTPPGAETP VAPAEEAPAAGSELVVAAEVAVQPVTPEQIVAVEPSTAAPVEAAPAPAGGEAEAAPSSEPQMAEAAVEPDANVESPEAAL AVAAASEPDAAGVAVPAESAMEAAEGEATGLPVEPPPPSAAALGDIIPSPAEEGAQAAKPSEVSGERRTPREAREAREPR NREKERGEKDKGRRPQEEKRRGDKHEDKEKAKPRRTDKIEDLLKVGQEVVVQISKDPIGTKGARLTSHISIPGRHLVFMP TVDHVGISRRISNEKERRRLRDIVDRLRPPGTGFIVRTVAENVPQEKLESDIRFLIEVWNQVVRKNEKRGGPGLLHPDLD LILRATRDLFAHDVEKLVVDDREEYERILGFVTAQDPALRDRVALHEGDDTVFDAYGIEQELQRATQRKVWLKSGGYLII DQAEALTAIDVNSGRYVGKKSLEETITKINVEAAKEIVYQLRLRNIGGIIICDFIDMEKAQNRDKVFKALQEALGRDKAK TNVLRISELGLVEMTRKRVRESIGRMLHEDCPYCDGNGFVKTATTVAYEIFREIRREAPGYKDSTLVINCNAEVARLLQG EERNELRHLMDRYNKSIQVKAQQNYHREQYDIYGRSASGPEHKVASSPGSGDGELAMQQRKPDSNGGGYGRQEQGRRGGG GGGGGGRDRGGERGNERSERGERGGDRREGRREGRSGGDRPRGDRGGERGDRSERGGERGERGGERGERSERGGERSERG ERSERGERGDRRGDRGERGERGGSQNTSGGGENAGGSTPPPPPASGGGSEPSGGTT
Sequences:
>Translated_936_residues MSSILVINAAGRETRVALVEGGHIAEFYLERKKDKGVVGNIYKGRVVRVLPGMQAAFVDIGLEKAAFLYVSDVVYDPDFA RAQFELTEGEHEDAPDVPDESEAEAAEAAARHAPPRHLEPEPEDAHFEPVAAPTESLPRDTALELAANAPTVTPPGAETP VAPAEEAPAAGSELVVAAEVAVQPVTPEQIVAVEPSTAAPVEAAPAPAGGEAEAAPSSEPQMAEAAVEPDANVESPEAAL AVAAASEPDAAGVAVPAESAMEAAEGEATGLPVEPPPPSAAALGDIIPSPAEEGAQAAKPSEVSGERRTPREAREAREPR NREKERGEKDKGRRPQEEKRRGDKHEDKEKAKPRRTDKIEDLLKVGQEVVVQISKDPIGTKGARLTSHISIPGRHLVFMP TVDHVGISRRISNEKERRRLRDIVDRLRPPGTGFIVRTVAENVPQEKLESDIRFLIEVWNQVVRKNEKRGGPGLLHPDLD LILRATRDLFAHDVEKLVVDDREEYERILGFVTAQDPALRDRVALHEGDDTVFDAYGIEQELQRATQRKVWLKSGGYLII DQAEALTAIDVNSGRYVGKKSLEETITKINVEAAKEIVYQLRLRNIGGIIICDFIDMEKAQNRDKVFKALQEALGRDKAK TNVLRISELGLVEMTRKRVRESIGRMLHEDCPYCDGNGFVKTATTVAYEIFREIRREAPGYKDSTLVINCNAEVARLLQG EERNELRHLMDRYNKSIQVKAQQNYHREQYDIYGRSASGPEHKVASSPGSGDGELAMQQRKPDSNGGGYGRQEQGRRGGG GGGGGGRDRGGERGNERSERGERGGDRREGRREGRSGGDRPRGDRGGERGDRSERGGERGERGGERGERSERGGERSERG ERSERGERGDRRGDRGERGERGGSQNTSGGGENAGGSTPPPPPASGGGSEPSGGTT >Mature_935_residues SSILVINAAGRETRVALVEGGHIAEFYLERKKDKGVVGNIYKGRVVRVLPGMQAAFVDIGLEKAAFLYVSDVVYDPDFAR AQFELTEGEHEDAPDVPDESEAEAAEAAARHAPPRHLEPEPEDAHFEPVAAPTESLPRDTALELAANAPTVTPPGAETPV APAEEAPAAGSELVVAAEVAVQPVTPEQIVAVEPSTAAPVEAAPAPAGGEAEAAPSSEPQMAEAAVEPDANVESPEAALA VAAASEPDAAGVAVPAESAMEAAEGEATGLPVEPPPPSAAALGDIIPSPAEEGAQAAKPSEVSGERRTPREAREAREPRN REKERGEKDKGRRPQEEKRRGDKHEDKEKAKPRRTDKIEDLLKVGQEVVVQISKDPIGTKGARLTSHISIPGRHLVFMPT VDHVGISRRISNEKERRRLRDIVDRLRPPGTGFIVRTVAENVPQEKLESDIRFLIEVWNQVVRKNEKRGGPGLLHPDLDL ILRATRDLFAHDVEKLVVDDREEYERILGFVTAQDPALRDRVALHEGDDTVFDAYGIEQELQRATQRKVWLKSGGYLIID QAEALTAIDVNSGRYVGKKSLEETITKINVEAAKEIVYQLRLRNIGGIIICDFIDMEKAQNRDKVFKALQEALGRDKAKT NVLRISELGLVEMTRKRVRESIGRMLHEDCPYCDGNGFVKTATTVAYEIFREIRREAPGYKDSTLVINCNAEVARLLQGE ERNELRHLMDRYNKSIQVKAQQNYHREQYDIYGRSASGPEHKVASSPGSGDGELAMQQRKPDSNGGGYGRQEQGRRGGGG GGGGGRDRGGERGNERSERGERGGDRREGRREGRSGGDRPRGDRGGERGDRSERGGERGERGGERGERSERGGERSERGE RSERGERGDRRGDRGERGERGGSQNTSGGGENAGGSTPPPPPASGGGSEPSGGTT
Specific function: Involved in the processing of the 5'-end of 16S rRNA. Could be involved in chromosome segregation and cell division. It may be one of the components of the cytoplasmic axial filaments bundles or merely regulate the formation of this structure [H]
COG id: COG1530
COG function: function code J; Ribonucleases G and E
Gene ontology:
Cell location: Cytoplasm, cytoskeleton [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 S1 motif domain [H]
Homologues:
Organism=Escherichia coli, GI87082235, Length=404, Percent_Identity=43.8118811881188, Blast_Score=316, Evalue=5e-87, Organism=Escherichia coli, GI1787325, Length=381, Percent_Identity=37.7952755905512, Blast_Score=245, Evalue=9e-66,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR003029 - InterPro: IPR019307 - InterPro: IPR022967 - InterPro: IPR004659 [H]
Pfam domain/function: PF10150 RNase_E_G; PF00575 S1 [H]
EC number: 3.1.4.- [C]
Molecular weight: Translated: 101490; Mature: 101358
Theoretical pI: Translated: 5.17; Mature: 5.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSILVINAAGRETRVALVEGGHIAEFYLERKKDKGVVGNIYKGRVVRVLPGMQAAFVDI CCCEEEEECCCCCEEEEEEECCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCCHHHHHHH GLEKAAFLYVSDVVYDPDFARAQFELTEGEHEDAPDVPDESEAEAAEAAARHAPPRHLEP CHHHHHHEEEHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC EPEDAHFEPVAAPTESLPRDTALELAANAPTVTPPGAETPVAPAEEAPAAGSELVVAAEV CCCCCCCCCCCCCHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEH AVQPVTPEQIVAVEPSTAAPVEAAPAPAGGEAEAAPSSEPQMAEAAVEPDANVESPEAAL EECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHE AVAAASEPDAAGVAVPAESAMEAAEGEATGLPVEPPPPSAAALGDIIPSPAEEGAQAAKP EEEECCCCCCCCEECCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHCCC SEVSGERRTPREAREAREPRNREKERGEKDKGRRPQEEKRRGDKHEDKEKAKPRRTDKIE CCCCCCCCCCHHHHHHHCHHHHHHHCCCHHCCCCCHHHHHCCCCCCHHHHCCCCHHHHHH DLLKVGQEVVVQISKDPIGTKGARLTSHISIPGRHLVFMPTVDHVGISRRISNEKERRRL HHHHHHHHHEEEECCCCCCCCCCCEEEEECCCCCEEEEECCHHHCCHHHHHCCHHHHHHH RDIVDRLRPPGTGFIVRTVAENVPQEKLESDIRFLIEVWNQVVRKNEKRGGPGLLHPDLD HHHHHHHCCCCCCEEHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH LILRATRDLFAHDVEKLVVDDREEYERILGFVTAQDPALRDRVALHEGDDTVFDAYGIEQ HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHEECCCCCEEECCCHHH ELQRATQRKVWLKSGGYLIIDQAEALTAIDVNSGRYVGKKSLEETITKINVEAAKEIVYQ HHHHHHHHHEEEECCCEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH LRLRNIGGIIICDFIDMEKAQNRDKVFKALQEALGRDKAKTNVLRISELGLVEMTRKRVR HHHHCCCCEEEEECCCHHHHCCHHHHHHHHHHHHCCCHHHHCEEEHHHCCHHHHHHHHHH ESIGRMLHEDCPYCDGNGFVKTATTVAYEIFREIRREAPGYKDSTLVINCNAEVARLLQG HHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHCC EERNELRHLMDRYNKSIQVKAQQNYHREQYDIYGRSASGPEHKVASSPGSGDGELAMQQR CHHHHHHHHHHHHCCCEEEEEHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHC KPDSNGGGYGRQEQGRRGGGGGGGGGRDRGGERGNERSERGERGGDRREGRREGRSGGDR CCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHCCCCCCC PRGDRGGERGDRSERGGERGERGGERGERSERGGERSERGERSERGERGDRRGDRGERGE CCCCCCCCCCCCHHCCCCHHHCCCCCCCHHHCCCCHHHHCCHHHHCCCCCCCCCCCCCCC RGGSQNTSGGGENAGGSTPPPPPASGGGSEPSGGTT CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure SSILVINAAGRETRVALVEGGHIAEFYLERKKDKGVVGNIYKGRVVRVLPGMQAAFVDI CCEEEEECCCCCEEEEEEECCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCCHHHHHHH GLEKAAFLYVSDVVYDPDFARAQFELTEGEHEDAPDVPDESEAEAAEAAARHAPPRHLEP CHHHHHHEEEHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCC EPEDAHFEPVAAPTESLPRDTALELAANAPTVTPPGAETPVAPAEEAPAAGSELVVAAEV CCCCCCCCCCCCCHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEH AVQPVTPEQIVAVEPSTAAPVEAAPAPAGGEAEAAPSSEPQMAEAAVEPDANVESPEAAL EECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHE AVAAASEPDAAGVAVPAESAMEAAEGEATGLPVEPPPPSAAALGDIIPSPAEEGAQAAKP EEEECCCCCCCCEECCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHCCC SEVSGERRTPREAREAREPRNREKERGEKDKGRRPQEEKRRGDKHEDKEKAKPRRTDKIE CCCCCCCCCCHHHHHHHCHHHHHHHCCCHHCCCCCHHHHHCCCCCCHHHHCCCCHHHHHH DLLKVGQEVVVQISKDPIGTKGARLTSHISIPGRHLVFMPTVDHVGISRRISNEKERRRL HHHHHHHHHEEEECCCCCCCCCCCEEEEECCCCCEEEEECCHHHCCHHHHHCCHHHHHHH RDIVDRLRPPGTGFIVRTVAENVPQEKLESDIRFLIEVWNQVVRKNEKRGGPGLLHPDLD HHHHHHHCCCCCCEEHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH LILRATRDLFAHDVEKLVVDDREEYERILGFVTAQDPALRDRVALHEGDDTVFDAYGIEQ HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHEECCCCCEEECCCHHH ELQRATQRKVWLKSGGYLIIDQAEALTAIDVNSGRYVGKKSLEETITKINVEAAKEIVYQ HHHHHHHHHEEEECCCEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHH LRLRNIGGIIICDFIDMEKAQNRDKVFKALQEALGRDKAKTNVLRISELGLVEMTRKRVR HHHHCCCCEEEEECCCHHHHCCHHHHHHHHHHHHCCCHHHHCEEEHHHCCHHHHHHHHHH ESIGRMLHEDCPYCDGNGFVKTATTVAYEIFREIRREAPGYKDSTLVINCNAEVARLLQG HHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHCC EERNELRHLMDRYNKSIQVKAQQNYHREQYDIYGRSASGPEHKVASSPGSGDGELAMQQR CHHHHHHHHHHHHCCCEEEEEHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHC KPDSNGGGYGRQEQGRRGGGGGGGGGRDRGGERGNERSERGERGGDRREGRREGRSGGDR CCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHCCCCCCC PRGDRGGERGDRSERGGERGERGGERGERSERGGERSERGERSERGERGDRRGDRGERGE CCCCCCCCCCCCHHCCCCHHHCCCCCCCHHHCCCCHHHHCCHHHHCCCCCCCCCCCCCCC RGGSQNTSGGGENAGGSTPPPPPASGGGSEPSGGTT CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]