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The map label for this gene is rbn [C]

Identifier: 108758048

GI number: 108758048

Start: 7008752

End: 7010137

Strand: Direct

Name: rbn [C]

Synonym: MXAN_5641

Alternate gene names: 108758048

Gene position: 7008752-7010137 (Clockwise)

Preceding gene: 108762342

Following gene: 108759553

Centisome position: 76.68

GC content: 69.84

Gene sequence:

>1386_bases
TTGAGGGAATCGGTGAAGCTGACGCCCCTCCCGTGGCTCCGTTACTTCCGCGAGCGGGCCACCCGGCTCTGGGCGCCCCT
ACAGCACACACCCGTGGGGCTGTTCGCGACGGACACCTTCCTGGCCGCGAAGACTGTGGCCCAGGGCTTTCGCGGGGAGA
ATCTCCGGCTTCGGGCCGCCGCGCTGACCTACGTCAGCATGTTCTCCCTGGTGCCCCTCCTGACGGTGGCGCTCGTGCTG
CTGACCGCCTTCCACCAGGACGAGTTCAAGGAGAAGCTGCGCTTCGTCGTCAGCGAAGTGCTCAACCCCGGGGTGCGCGG
CAAGTCCTCCCAGTTCCTCGACCGGTTCCTGAACCCCACGCACACCGTCGCCATTGGCAGCGTGGGCTTCCTGGCGGTGC
TCCTGTCCGCCGGCTCGCTGCTGCGGCAGCTCGACGGCGCCGTCAACGAGCTGTGGGGCATCCGGCGGCAACGGCCGTGG
CGCATCCGGCTGCTCATCTACTCGGGCCTCCTGCTCGTGGGCCCCTTCTTCCTCGCGCTGTCCTTCTCCGGGACGGGCAA
GGTCCGCGTCTTCCTGCAGAGCCACGCGCCCTACGCCGGCGCCTTCATCCTGCTGGGCACCACGCTCGTCACCGTGGCCA
GCCTCACCCTGCTCTACTACTGGACGCCCTACGCGCATGTCCGCGTCCGGTCCGCGCTCGCCGGAGGACTGGTGGCCGGC
TTGGGGTGGACGTTCGCCAAGCAGGTGTACGCCGCATTCGCGGAGCGCAGCTTCCAGTACAACCCCCTCTACGGCTCGCT
TGGCGCGCTCCCGTTGTTCCTGGCGTGGGTCTACGTGAGCTGGCTGTTGGTACTCTTTGGCGCCCGGCTCTCCTATGCCG
TGGAACACACCGCCTTCCGGCACTCCCTCTTCGCTTTTGGAAGCCACCCGCGCGCGCACGAACTGGTCGCCGCCCGTGTC
GCCCAGGAGGCCACCCTGGCCTGGGTGGACGGACTGCCGCCTCCCTCGCCGCGCGAGCTGGCGACGCGGCTGCGCGTCCC
CGAGTCGCTGGTCCACGAGGTCGTCGACCGCATGGTGACCGCCGAGCTGCTGGAGCGCCTCCGCAAAGGGGGCCTGCGTC
CCGCGAAGGACCCGGCTGTCCTCACGCTGGCGGATACCACGCTCGCCGTGCACGGCGTGATGCTCACCGGCGGCGCGGAG
GGATGGAACGGGCCCCGGGCGCCCGGATTCGAACAGATGGAGCCCATCTTCCAGGCAGCTGACTGCGCCGGTGTCGACCT
GCTACGTCGCACCCGATGGCTGGACCTGGTGGTGCCGCTCCGCCCAGGGCTGGCCGAGCCTGCTCCCGCCCCACCACCCA
GGGTGGCCGCAGGGGGAAATCCGTAG

Upstream 100 bases:

>100_bases
TCACACGGATGATGTCCTCACGCTCCGAGCACGTATCGCCCCGTGTGGGGCAGCGTTCCCTCCGCCTCCGTCAGGCCCGC
GACTGGCGCGGCCGGGCCTC

Downstream 100 bases:

>100_bases
CGTTTCTGGGTGGTTGGAAGCTCACCCTGCTTGCACGAAGGATGCGTTCTGTTATGTTTTCAGGATTCGACCACGGGCCA
GAGCGCCCTGTTTCCAAGGG

Product: YihY family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 461; Mature: 461

Protein sequence:

>461_residues
MRESVKLTPLPWLRYFRERATRLWAPLQHTPVGLFATDTFLAAKTVAQGFRGENLRLRAAALTYVSMFSLVPLLTVALVL
LTAFHQDEFKEKLRFVVSEVLNPGVRGKSSQFLDRFLNPTHTVAIGSVGFLAVLLSAGSLLRQLDGAVNELWGIRRQRPW
RIRLLIYSGLLLVGPFFLALSFSGTGKVRVFLQSHAPYAGAFILLGTTLVTVASLTLLYYWTPYAHVRVRSALAGGLVAG
LGWTFAKQVYAAFAERSFQYNPLYGSLGALPLFLAWVYVSWLLVLFGARLSYAVEHTAFRHSLFAFGSHPRAHELVAARV
AQEATLAWVDGLPPPSPRELATRLRVPESLVHEVVDRMVTAELLERLRKGGLRPAKDPAVLTLADTTLAVHGVMLTGGAE
GWNGPRAPGFEQMEPIFQAADCAGVDLLRRTRWLDLVVPLRPGLAEPAPAPPPRVAAGGNP

Sequences:

>Translated_461_residues
MRESVKLTPLPWLRYFRERATRLWAPLQHTPVGLFATDTFLAAKTVAQGFRGENLRLRAAALTYVSMFSLVPLLTVALVL
LTAFHQDEFKEKLRFVVSEVLNPGVRGKSSQFLDRFLNPTHTVAIGSVGFLAVLLSAGSLLRQLDGAVNELWGIRRQRPW
RIRLLIYSGLLLVGPFFLALSFSGTGKVRVFLQSHAPYAGAFILLGTTLVTVASLTLLYYWTPYAHVRVRSALAGGLVAG
LGWTFAKQVYAAFAERSFQYNPLYGSLGALPLFLAWVYVSWLLVLFGARLSYAVEHTAFRHSLFAFGSHPRAHELVAARV
AQEATLAWVDGLPPPSPRELATRLRVPESLVHEVVDRMVTAELLERLRKGGLRPAKDPAVLTLADTTLAVHGVMLTGGAE
GWNGPRAPGFEQMEPIFQAADCAGVDLLRRTRWLDLVVPLRPGLAEPAPAPPPRVAAGGNP
>Mature_461_residues
MRESVKLTPLPWLRYFRERATRLWAPLQHTPVGLFATDTFLAAKTVAQGFRGENLRLRAAALTYVSMFSLVPLLTVALVL
LTAFHQDEFKEKLRFVVSEVLNPGVRGKSSQFLDRFLNPTHTVAIGSVGFLAVLLSAGSLLRQLDGAVNELWGIRRQRPW
RIRLLIYSGLLLVGPFFLALSFSGTGKVRVFLQSHAPYAGAFILLGTTLVTVASLTLLYYWTPYAHVRVRSALAGGLVAG
LGWTFAKQVYAAFAERSFQYNPLYGSLGALPLFLAWVYVSWLLVLFGARLSYAVEHTAFRHSLFAFGSHPRAHELVAARV
AQEATLAWVDGLPPPSPRELATRLRVPESLVHEVVDRMVTAELLERLRKGGLRPAKDPAVLTLADTTLAVHGVMLTGGAE
GWNGPRAPGFEQMEPIFQAADCAGVDLLRRTRWLDLVVPLRPGLAEPAPAPPPRVAAGGNP

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family [H]

Homologues:

Organism=Escherichia coli, GI1790319, Length=252, Percent_Identity=26.5873015873016, Blast_Score=87, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 50640; Mature: 50640

Theoretical pI: Translated: 10.69; Mature: 10.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRESVKLTPLPWLRYFRERATRLWAPLQHTPVGLFATDTFLAAKTVAQGFRGENLRLRAA
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHCCCCCCCEEHHH
ALTYVSMFSLVPLLTVALVLLTAFHQDEFKEKLRFVVSEVLNPGVRGKSSQFLDRFLNPT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC
HTVAIGSVGFLAVLLSAGSLLRQLDGAVNELWGIRRQRPWRIRLLIYSGLLLVGPFFLAL
CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHCHHHHHHHHHHH
SFSGTGKVRVFLQSHAPYAGAFILLGTTLVTVASLTLLYYWTPYAHVRVRSALAGGLVAG
EECCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
LGWTFAKQVYAAFAERSFQYNPLYGSLGALPLFLAWVYVSWLLVLFGARLSYAVEHTAFR
HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HSLFAFGSHPRAHELVAARVAQEATLAWVDGLPPPSPRELATRLRVPESLVHEVVDRMVT
HHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
AELLERLRKGGLRPAKDPAVLTLADTTLAVHGVMLTGGAEGWNGPRAPGFEQMEPIFQAA
HHHHHHHHHCCCCCCCCCCEEEEECHHHHHEEEEEECCCCCCCCCCCCCHHHHHHHHHHH
DCAGVDLLRRTRWLDLVVPLRPGLAEPAPAPPPRVAAGGNP
CCCHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure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CCCHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA